2008-05-16 15:50  dray

	* DESCRIPTION: ---------- release of ade4 1.4-8 ----------

2008-05-07 13:29  jthioulo

	* R/dudi.acm.R: bug correction (mail of JR Lobry on adelist):
	  (any(row.w) < 0) vs. (any(row.w < 0))

2008-05-07 13:27  jthioulo

	* R/dudi.R: bug correction (mail of JR Lobry on adelist):
	  any(col.w) < 0 vs. any(col.w < 0)

2008-04-18 16:37  penel

	* data/ggtortoises.rda: pixmap S3 objects transformed into S4 class

2008-04-18 15:31  dray

	* DESCRIPTION: ---------- release of ade4 1.4-7 ----------

2008-04-18 15:31  dray

	* data/capitales.rda: pixmap S3 objects transformed into S4 class

2008-04-18 15:31  dray

	* data/capitales.rda: pixmap S3 objects transformed into S4 class

2008-04-17 13:02  dray

	* DESCRIPTION: ---------- release of ade4 1.4-6 ----------

2008-04-16 19:02  dray

	* R/phylog.R: Correct a bug in phylog.extract (mail of S. Ollier)

2008-04-16 18:36  dray

	* src/adesub.c, src/adesub.h, src/testrlq.c: matcentragehi in now
	  in adesub

2008-04-16 18:33  dray

	* R/nipals.R, man/nipals.Rd: New function for NIPALS algorithm,
	  i.e. PCA with (or without) NA

2008-04-16 18:31  dray

	* man/randtest.Rd: add some words about the computation of pvalues
	  for two-sided test

2008-04-16 15:18  dufour

	* man/ade4.package.Rd: new documentation for the package by typing ?ade4

2008-04-16 12:12  dufour

	* man/pcaiv.Rd: add description of param in the values section

2008-04-14 14:41  penel

	* man/table.phylog.Rd: Example table.phylog set to dontrun

2008-04-02 13:16  dray

	* man/multispati.Rd, man/vegtf.Rd: Update the source reference:
	  Dray et al. (2008)

2008-03-27 15:28  dufour

	* man/dudi.pca.Rd: Modifications : explanations about values (cent
	  and norm) ;  it{} into emph{}.

2008-03-27 14:47  dufour

	* man/dudi.pca.Rd: Modification of explanations ($cent and $norm)

2008-03-26 11:29  dray

	* R/sco.distri.R: correct a bug (identified by S. Pavoine): default
	  label argument was badly considered when one column contains only
	  O's

2008-03-20 16:10  dray

	* R/scatter.R, R/scatterutil.R, man/scatter.Rd, man/scatterutil.Rd:
	  New utility function scatterutil.sco and scatterutil.convrot90
	  for 1D graphical representation

2008-03-20 16:06  dray

	* R/sco.gauss.R, man/sco.gauss.Rd: New function sco.gauss for 1D
	  graphical representation

2008-03-20 16:05  dray

	* R/sco.match.R, man/sco.match.Rd: New function sco.match for 1D
	  graphical representation

2008-03-20 16:05  dray

	* R/sco.class.R, man/sco.class.Rd: New function sco.class for 1D
	  graphical representation

2008-03-20 16:05  dray

	* R/sco.label.R, man/sco.label.Rd: New function sco.label for 1D
	  graphical representation

2008-03-19 17:00  dray

	* R/sco.qual.R: Functions of this file are now in sco.label.R and
	  sco.gauss.R

2008-03-18 15:18  dray

	* inst/CITATION: Add two new references to the CITATION file

2008-03-17 16:47  dray

	* R/randtest.cca.R, R/randtest.pcaiv.R, R/randtest.pcaivortho.R,
	  man/randtest.pcaiv.Rd: News functions for permutation tests in
	  constrained analysis

2008-02-05 14:26  dray

	* src/testdim.c: Correct a bug in memory allocation of the function
	  svdd

2008-01-29 16:07  jthioulo

	* man/sco.label.Rd: added function: Draws evenly spaced labels,
	  each label linked to the corresponding value of a numeric score

2008-01-29 16:07  jthioulo

	* man/sco.gauss.Rd: added function: Draws Gauss curves with the
	  same mean and variance as the scores of indivivuals belonging to
	  categories of several factors

2008-01-29 16:04  jthioulo

	* man/veuvage.Rd: Correstion of illegal accented character in
	  exemple code

2008-01-29 16:04  jthioulo

	* R/sco.qual.R: adds two functions: sco.gauss and sco.label (draw
	  Gauss curves on a score by categories of several factors)

2007-11-09 18:19  dray

	* R/newick2phylog.R: Correct a bug. In newick2phylog.addtools,
	  eigen does not return an orthogonal basis when there are null
	  eigenvalues (Wscores). Vectors are now orthogonalized using qr

2007-10-16 16:41  penel

	* DESCRIPTION: Change License to GPL (>=2)

2007-10-12 13:35  penel

	* DESCRIPTION: ---------- release of ade4 1.4-5 ----------

2007-10-11 17:50  penel

	* man/dunedata.Rd, man/steppe.Rd: Replace non_function by Doctype

2007-10-09 12:54  penel

	* src/testdim.c, src/tests.c: Correction of a bug in the
	  declaration of variables

2007-09-25 13:10  dray

	* DESCRIPTION: ---------- release of ade4 1.4-4 ----------

2007-09-20 17:48  dray

	* R/coinertia.R, R/dudi.R, R/dudi.pco.R: Modification of the call
	  of the imported function chooseaxes for the use of the ade4TkGUI
	  package

2007-09-17 18:22  dray

	* man/ktab.Rd, man/ktab.match2ktabs.Rd, man/pta.Rd, man/statis.Rd,
	  R/within.pca.R, man/within.pca.Rd, R/withinpca.R,
	  man/withinpca.Rd: The function within.pca is renamed withinpca

2007-09-17 17:12  dray

	* R/ktab.R, man/ktab.Rd: Change the names of the arguments of the
	  function '[.ktab'

2007-09-17 15:05  dray

	* man/amova.Rd, man/between.Rd, man/coinertia.Rd, man/corkdist.Rd,
	  man/discrimin.Rd, man/dpcoa.Rd, man/dudi.Rd, man/dudi.acm.Rd,
	  man/dudi.pco.Rd, man/foucart.Rd, man/is.euclid.Rd,
	  man/kplot.foucart.Rd, man/kplot.mcoa.Rd, man/kplot.mfa.Rd,
	  man/kplot.pta.Rd, man/kplot.sepan.Rd, man/kplot.statis.Rd,
	  man/krandtest.Rd, man/ktab.Rd, man/mcoa.Rd, man/mfa.Rd,
	  man/multispati.Rd, man/neig.Rd, man/niche.Rd, man/orthobasis.Rd,
	  man/pcaiv.Rd, man/phylog.Rd, man/plot.phylog.Rd, man/procuste.Rd,
	  man/pta.Rd, man/randtest.Rd, man/randtest.amova.Rd,
	  man/randtest.between.Rd, man/randtest.coinertia.Rd,
	  man/randtest.discrimin.Rd, man/reconst.Rd, man/rlq.Rd,
	  man/rtest.Rd, man/rtest.between.Rd, man/rtest.discrimin.Rd,
	  man/scatter.acm.Rd, man/scatter.coa.Rd, man/scatter.dudi.Rd,
	  man/scatter.fca.Rd, man/score.acm.Rd, man/score.coa.Rd,
	  man/score.mix.Rd, man/score.pca.Rd, man/sepan.Rd, man/statis.Rd,
	  man/supcol.Rd, man/suprow.Rd, man/testdim.Rd, man/within.Rd,
	  man/witwit.coa.Rd: Correct usage entries for S3 methods

2007-09-14 13:58  jthioulo

	* DESCRIPTION: suggests ade4TkGUI

2007-09-14 11:15  jthioulo

	* R/randtest.between.R: modification of the eval call (now it does not search in the global
	  environment)

2007-09-13 13:57  dray

	* src/Makevars: replace CRLF (DOS) by LF (Unix)

2007-09-13 13:16  jthioulo

	* R/dudi.R, R/dudi.pco.R, R/coinertia.R: modification for the global variable
	  ade4TkGUIFlag

2007-09-06 19:08  dray

	* man/aminoacyl.Rd, man/ardeche.Rd, man/area.plot.Rd,
	  man/as.taxo.Rd, man/atlas.Rd, man/atya.Rd, man/avijons.Rd,
	  man/aviurba.Rd, man/baran95.Rd, man/between.Rd,
	  man/bicenter.wt.Rd, man/buech.Rd, man/cailliez.Rd,
	  man/carni70.Rd, man/casitas.Rd, man/cca.Rd, man/chatcat.Rd,
	  man/chats.Rd, man/clementines.Rd, man/coinertia.Rd,
	  man/corkdist.Rd, man/discrimin.Rd, man/discrimin.coa.Rd,
	  man/dist.binary.Rd, man/dist.dudi.Rd, man/dist.genet.Rd,
	  man/dist.neig.Rd, man/dist.prop.Rd, man/dist.quant.Rd,
	  man/divcmax.Rd, man/dotchart.phylog.Rd, man/dotcircle.Rd,
	  man/doubs.Rd, man/dpcoa.Rd, man/dudi.Rd, man/dudi.acm.Rd,
	  man/dudi.coa.Rd, man/dudi.dec.Rd, man/dudi.fca.Rd,
	  man/dudi.mix.Rd, man/dudi.nsc.Rd, man/dudi.pca.Rd,
	  man/dudi.pco.Rd, man/escopage.Rd, man/euro123.Rd, man/fruits.Rd,
	  man/fuzzygenet.Rd, man/gearymoran.Rd, man/genet.Rd,
	  man/granulo.Rd, man/gridrowcol.Rd, man/ichtyo.Rd,
	  man/inertia.dudi.Rd, man/is.euclid.Rd, man/julliot.Rd,
	  man/jv73.Rd, man/kdist.Rd, man/kdist2ktab.Rd, man/kdisteuclid.Rd,
	  man/kplot.foucart.Rd, man/kplot.mcoa.Rd, man/kplot.mfa.Rd,
	  man/kplot.pta.Rd, man/kplot.sepan.Rd, man/PI2newick.Rd,
	  man/RV.rtest.Rd, man/RVdist.randtest.Rd, man/kplot.statis.Rd,
	  man/ktab.Rd, man/ktab.data.frame.Rd, man/ktab.list.df.Rd,
	  man/ktab.list.dudi.Rd, man/ktab.match2ktabs.Rd,
	  man/ktab.within.Rd, man/lascaux.Rd, man/lingoes.Rd, man/macon.Rd,
	  man/mafragh.Rd, man/mantel.rtest.Rd, man/mariages.Rd,
	  man/mcoa.Rd, man/meau.Rd, man/meaudret.Rd, man/mfa.Rd,
	  man/microsatt.Rd, man/mjrochet.Rd, man/mld.Rd, man/mollusc.Rd,
	  man/monde84.Rd, man/morphosport.Rd, man/mstree.Rd,
	  man/multispati.Rd, man/multispati.randtest.Rd,
	  man/multispati.rtest.Rd, man/neig.Rd, man/newick.eg.Rd,
	  man/newick2phylog.Rd, man/niche.Rd, man/njplot.Rd,
	  man/orthobasis.Rd, man/orthogram.Rd, man/ours.Rd, man/palm.Rd,
	  man/pcaiv.Rd, man/pcaivortho.Rd, man/pcoscaled.Rd, man/phylog.Rd,
	  man/plot.phylog.Rd, man/procuste.Rd, man/procuste.rtest.Rd,
	  man/pta.Rd, man/quasieuclid.Rd, man/reconst.Rd, man/rhone.Rd,
	  man/rpjdl.Rd, man/rtest.Rd, man/rtest.between.Rd,
	  man/rtest.discrimin.Rd, man/s.arrow.Rd, man/sarcelles.Rd,
	  man/scalewt.Rd, man/scatter.acm.Rd, man/scatter.coa.Rd,
	  man/scatter.dudi.Rd, man/s.chull.Rd, man/s.class.Rd,
	  man/s.corcircle.Rd, man/s.distri.Rd, man/s.hist.Rd,
	  man/s.image.Rd, man/s.kde2d.Rd, man/s.label.Rd, man/s.logo.Rd,
	  man/s.match.Rd, man/s.multinom.Rd, man/s.traject.Rd,
	  man/s.value.Rd, man/scatter.Rd, man/scatter.fca.Rd,
	  man/sco.boxplot.Rd, man/sco.distri.Rd, man/sco.quant.Rd,
	  man/score.Rd, man/score.acm.Rd, man/score.coa.Rd,
	  man/score.mix.Rd, man/score.pca.Rd, man/sepan.Rd, man/statis.Rd,
	  man/steppe.Rd, man/supcol.Rd, man/suprow.Rd,
	  man/symbols.phylog.Rd, man/t3012.Rd, man/table.cont.Rd,
	  man/table.dist.Rd, man/table.paint.Rd, man/table.phylog.Rd,
	  man/table.value.Rd, man/tarentaise.Rd, man/triangle.class.Rd,
	  man/triangle.plot.Rd, man/trichometeo.Rd, man/ungulates.Rd,
	  man/uniquewt.df.Rd, man/variance.phylog.Rd, man/veuvage.Rd,
	  man/westafrica.Rd, man/within.pca.Rd, man/within.Rd,
	  man/witwit.coa.Rd, man/worksurv.Rd: Added the encoding of Rd
	  files and remove the email of Daniel Chessel (he is retired)

2007-09-06 17:11  dray

	* R/scatter.acm.R: Clean R files: replace T by TRUE.

2007-09-06 17:03  dray

	* R/newick2phylog.R: Clean R files: remove multiple function
	  definitions (floc1(s) becomes floc1,floc2,floc3. Thanks to
	  UsagePackageCheck of codetools

2007-09-06 16:55  dray

	* R/multispati.R, R/multispati.randtest.R, R/multispati.rtest.R,
	  R/neig.R, R/orthobasis.R, R/s.image.R, R/s.kde2d.R, R/s.logo.R:
	  Clean R files: correct imported function definition. Thanks to
	  UsagePackageCheck of codetools

2007-09-06 15:53  dray

	* R/orthogram.R: Correct a bug: test for the choice between
	  orthobas, neig or phylog

2007-09-06 14:21  dray

	* R/scatter.acm.R: Correct a bug: replace score. by score.acm

2007-09-06 14:19  dray

	* R/kplot.foucart.R, R/kplot.mfa.R, R/mcoa.R, R/rlq.R,
	  R/score.coa.R, R/sepan.R, R/variance.phylog.R: Clean R files:
	  remove local variables assigned but not used. Thanks to
	  checkUsagePackage of codetools

2007-09-06 13:58  dray

	* R/PI2newick.R, R/RV.rtest.R, R/RVdist.randtest.R, R/amova.R,
	  R/area.plot.R, R/as.taxo.R, R/between.R, R/coinertia.R,
	  R/corkdist.R, R/disc.R, R/discrimin.R, R/discrimin.coa.R,
	  R/dist.dudi.R, R/dist.genet.R, R/dotcircle.R, R/dudi.coa.R,
	  R/dudi.dec.R, R/dudi.nsc.R, R/foucart.R, R/fuzzygenet.R,
	  R/genet.R, R/gridrowcol.R, R/kplot.foucart.R, R/kplot.mfa.R,
	  R/kplot.statis.R, R/ktab.R, R/ktab.list.dudi.R,
	  R/ktab.match2ktabs.R, R/ktab.within.R, R/lingoes.R, R/mcoa.R,
	  R/mld.R, R/multispati.R, R/newick2phylog.R, R/niche.R,
	  R/optimEH.R, R/orthobasis.R, R/orthogram.R, R/pcaiv.R,
	  R/phylog.R, R/plot.phylog.R, R/procuste.R, R/rlq.R,
	  R/rtest.between.R, R/s.corcircle.R, R/s.hist.R, R/s.image.R,
	  R/scatter.R, R/sco.distri.R, R/score.acm.R, R/score.coa.R,
	  R/score.mix.R, R/sepan.R, R/statis.R, R/symbols.phylog.R,
	  R/table.cont.R, R/table.phylog.R, R/uniquewt.df.R,
	  R/variance.phylog.R, R/within.R, R/within.pca.R: Clean R files:
	  remove local variables assigned but not used. Thanks to
	  checkUsagePackage of codetools

2007-09-06 10:08  dray

	* man/bordeaux.Rd, man/cca.Rd, man/dudi.hillsmith.Rd,
	  man/elec88.Rd, man/seconde.Rd: Clean Rd files: remove unmatched
	  right brace

2007-09-04 18:12  dray

	* R/testdim.R, man/testdim.Rd, src/Makevars, src/testdim.c: New
	  function testdim to estimate the number of axes in multivariate
	  analysis

2007-09-04 17:07  dray

	* R/gearymoran.R, R/krandtest.R, R/niche.R, R/orthogram.R,
	  R/randtest.amova.R, man/gearymoran.Rd, man/krandtest.Rd,
	  man/niche.Rd, man/orthogram.Rd: reimplementation of the class
	  krandtest and new function as.krandtest

2007-09-04 16:50  dray

	* man/vegtf.Rd: correction of a bug in the example section

2007-09-03 18:53  dray

	* R/score.coa.R, man/score.coa.Rd: new function reciprocal.coa (see
	  http://listes.univ-lyon1.fr/wws/arc/adelist/2007-07/msg00007.html)

2007-09-03 18:26  dray

	* R/sco.distri.R, man/sco.distri.Rd: sco.distri returns a
	  data.frame with means and variances (see
	  http://listes.univ-lyon1.fr/wws/arc/adelist/2007-06/msg00018.html)

2007-09-03 17:24  dray

	* R/scatter.R, R/sepan.R, R/witwitsepan.R: Add yaxt argument to
	  scatterutil.eigen (see
	  http://listes.univ-lyon1.fr/wws/arc/adelist/2007-07/msg00022.html)

2007-09-03 17:04  dray

	* R/multispati.R: Correct legend in plot.multispati

2007-09-03 16:58  dray

	* man/vegtf.Rd, data/vegtf.rda: New vegetation data set to
	  illustrate multispati analysis

2007-09-03 16:51  dray

	* R/niche.R, man/niche.Rd: New functions niche.param and
	  rtest.niche

2007-08-29 18:20  dray

	* R/area.plot.R: the function area2poly is modified to export the
	  bbox attribute for each polygon

2007-08-29 18:00  dray

	* R/s.corcircle.R: correct bug of the grid argument. see
	  http://listes.univ-lyon1.fr/wws/arc/adelist/2007-07/msg00001.html

2007-08-29 17:47  dray

	* R/rlq.R, R/randtest-internal.R: correct bugs in memory allocation
	  (C interface). These bugs have been identified using valgrind  by
	  B. Ripley (12/06/2007)

2007-06-15 09:49  dray

	* man/dunedata.Rd: correct the number of rows and columns in the
	  help file

2007-04-16 14:54  dray

	* DESCRIPTION: ---------- release of ade4 1.4-3 ----------

2007-04-12 15:39  dray

	* man/suprow.Rd: correct the example section

2007-04-12 14:58  dray

	* data/atlas.rda, data/avijons.rda, data/aviurba.rda,
	  data/baran95.rda, data/bf88.rda, data/chevaine.rda,
	  data/cnc2003.rda, data/elec88.rda, data/monde84.rda,
	  data/rankrock.rda, data/rpjdl.rda, data/sarcelles.rda,
	  data/steppe.rda, data/t3012.rda, data/tarentaise.rda,
	  data/veuvage.rda, data/westafrica.rda: remove non ASCII
	  characters in data

2007-03-26 18:47  jombart

	* R/dudi.pco.R: sub and csub arguments are now actually passed to
	  s.label

2007-03-12 15:34  jombart

	* R/scatter.R, man/scatter.Rd: removed add.scatter.eig
	* R/add.scatter.R: new functions add.scatter and add.scatter.eig
	* man/add.scatter.Rd: doc for add.scatter and add.scatter.eig

2007-03-07 19:46  jombart

	* data/rpjdl.rda: removed accents

2007-02-19 10:53  jthioulo

	* R/s.arrow.R, man/s.arrow.Rd: added the "boxes"
	  argument

2007-02-16 10:13  dray

	* man/orthogram.Rd: update the reference to
	  Ollier et al.

