Package: aPEAR
Title: Advanced Pathway Enrichment Analysis Representation
Version: 1.0.0
Authors@R: c(
  person("Ieva", "Kerseviciute", email = "kerseviciute.ieva@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-9353-038X")),
  person("Juozas", "Gordevicius", email = "juozas@vugene.com", role = "ths", comment = c(ORCID = "0000-0003-3190-6721")),
  person("VUGENE, LLC", role = c("cph", "fnd")))
Description: Simplify pathway enrichment analysis results by detecting clusters
    of similar pathways and visualizing it as an enrichment network, where
    nodes and edges describe the pathways and similarity between them,
    respectively. This reduces the redundancy of the overlapping pathways and
    helps to notice the most important biological themes in the data
    (Kerseviciute and Gordevicius (2023) <doi:10.1101/2023.03.28.534514>).
URL: https://gitlab.com/vugene/aPEAR
BugReports: https://gitlab.com/vugene/aPEAR/-/issues
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.2.3
Suggests: Spectrum, clusterProfiler, gprofiler2, DOSE, org.Hs.eg.db,
        testthat (>= 3.0.0), knitr, rmarkdown, stringr
Depends: R (>= 3.5.0)
Config/testthat/edition: 3
Imports: arules, bayesbio, data.table, dplyr, igraph, lsa, MCL,
        reshape2, tibble, utils, stats, methods, ggplot2, ggrepel,
        ggforce
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2023-06-12 08:01:24 UTC; ieva
Author: Ieva Kerseviciute [aut, cre] (<https://orcid.org/0000-0002-9353-038X>),
  Juozas Gordevicius [ths] (<https://orcid.org/0000-0003-3190-6721>),
  VUGENE, LLC [cph, fnd]
Maintainer: Ieva Kerseviciute <kerseviciute.ieva@gmail.com>
Repository: CRAN
Date/Publication: 2023-06-12 18:10:13 UTC
