6308f205991bb23bf9ddeefd247b6c75 *Changelog
b4fb059abf19ff2be074beed347b42b0 *DESCRIPTION
f910de2dfb54ed572d2b2842ed53f80c *NAMESPACE
2640fb7286cab45b6de425c01109f80e *R/AFcorMI.R
ea14a2a861b238bbb31d9f54117b7fdb *R/Functions-fromSimilarity.R
f0a23a7cf2d4b05f06b2b1dbe29eeb21 *R/Functions-multiData.R
3945e17e98d78c92a66f641173f9d503 *R/Functions.R
8de528d34b5dc682e688510c88f62c46 *R/GOenrichmentAnalysis.R
a741dd19796b763560aba5d13f00fc48 *R/TrueTrait.R
3747f2e4a71105d8e3ac4c54914b6bd4 *R/accuracyMeasures.R
6694f89a89e904eb1bc90d28cf28fc37 *R/adjacency.polyReg.R
3532a8d0c9e1ea87935747498e952c75 *R/adjacency.splineReg.R
7ffe500fa743d13204987bf6d1fd2850 *R/blockwiseModulesC.R
c4e596d1a2e144840649406792a197be *R/branchSplit.R
15468ef5e298f2fdb6320a53fe144051 *R/coClustering.R
ceee787204a986fedae3e8b3ce86d121 *R/collapseRows.R
93b1234770b325950074537bc2aad873 *R/collapseRowsUsingKME.R
46a73fe3580e01ceab1bdcb55c316c3c *R/conformityDecomposition.R
02dab22b7430423c18deb9490fee4172 *R/consensusDissTOMandTree.R
6a3752172cc4c31d53eec0cdc1463ea7 *R/consensusRepresentatives.R
eace97c58dfa0a2048c7aa676d7bf9a6 *R/consensusTOM.R
239273bfb01626e6a7a6ea7eb966bca7 *R/corAndPvalue.R
0fded4e50cc163a00b2251dd9fe98758 *R/corFunctions.R
f5dfb236765806a3eb39bd028bff071b *R/coxRegressionResiduals.R
aa9c7ff1a228742079e2cbd4a1f4c28e *R/dendrogramAdjustmentFunctions.R
201ca197e87d90d86847a4ecbfea9088 *R/empiricalBayesLM.R
189b8511440c0ada06cf0e91abd56db8 *R/exportFunctions.R
7c8dd84966760a334c2d8cb07f094529 *R/heatmapWithLegend.R
9d50c80af2850c9a9f2899a6e9f66492 *R/hierarchicalConsensusModules.R
d47e20e035b4f6abc5897ce0ec4620e6 *R/internalConstants.R
da2729744a42bda91cc02ddf3714a612 *R/kMEcomparisonScatterplot.R
9ad0513b5a21e56e67fba7c9b9647d3d *R/labelPoints.R
c4bbf0eec5c48beb6b66053f66cfd335 *R/matchLabels.R
de5a35825d9b736b61c515ebee717d25 *R/moduleMergeUsingKME.R
ecf780be98cd2b1b641298823be69da3 *R/modulePreservation.R
3e43f0d46f0e7513e016511293f13ad1 *R/multiData.R
d96c4db72edd76ecee257f03f3743c3e *R/mutualInfoAdjacency.R
f01e9b205225218592759842ec81a61a *R/nearestCentroidPredictor.R
ff247c78f289e887d88ea719e482e2ee *R/networkConcepts.R
cbbf15f7e1af46c97769349028dcc197 *R/overlapTableUsingKME.R
dd248a6dbff1e165b81e4a55f5ba35e9 *R/plotDendrogram.R
1f84c828572b06bc6baf3ad5df077b99 *R/populationMeansInAdmixture.R
1c35495264dc245f0c417f2797d649c1 *R/proportionsInAdmixture.R
494f6d51bb0b09eb71e80bebdeebf529 *R/quantileC.R
0f6a00ada5b99112e8dadea807aa2a00 *R/qvalue.R
69f368afdd00a44008445ba5d90cdd6b *R/returnGeneSetsAsList.R
698d3d0ad4bbdde32bce989d480c080e *R/sampledModules.R
9150985fe60317f9ad20f66cacaf7170 *R/smaFunctions.R
101bc6f0e31a5343456b98ccfb1ce6cb *R/standardScreeningBinaryTrait.R
f20cae9009e6bca9e4f19328f17a229f *R/stratifiedBarplot.R
838bed5c4cbe28e4c942be6e9ca537ac *R/transposeBigData.R
8603738eadb272fa798eb71c9cb173df *R/useNThreads.R
e3b8d1a62e917f2ef98ca12d80b28247 *R/userListEnrichment.R
42a7d01f9a9dd9111fe1fdc42d4c7e26 *R/verboseIplot.R
9fb8ae431795a46628ae79049344a17d *R/votingLinearPredictor.R
60cadb76d631c92423aa1ca9fc354c4e *R/zzz.R
f403f840e0fc7f8a0c352107793e0b46 *data/BloodLists.rda
51c2c6e860d1506d66e9b65c524453be *data/BrainLists.rda
7bdbaf29df66b5302497c33719d384ae *data/BrainRegionMarkers.rda
ad0ed9fc9a81c1b69c0b2866967a112b *data/ImmunePathwayLists.rda
fbe597b58e5ece1cfb445339988bd936 *data/PWLists.rda
c6e9fa3b41671b6ad31df708e1a013ff *data/SCsLists.rda
2ecf550fdec051c8f06bd01233cef6b5 *inst/CITATION
1395f9a0fa5ae4ae4d33450dd978bf20 *man/AFcorMI.Rd
6d8f05dde0ca15ee026da0f8c32b791e *man/BD.getData.Rd
90e62d285af393b1c3598dca8b5e4901 *man/BloodLists.Rd
2692449a2600292b3b10f07bfa70010d *man/BrainLists.Rd
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8c7d3bbf8ea375ebdd7c50d47d27c663 *man/GOenrichmentAnalysis.Rd
4de45938151062d0afaa35fbebd71074 *man/GTOMdist.Rd
71782d3e2e09a394a6a512b4069e1434 *man/ImmunePathwayLists.Rd
21b4631827ab613c08045a398a0145f7 *man/PWLists.Rd
a1c383c7c833d5d3e336f02b5fead2f6 *man/SCsLists.Rd
25b979522bb3b52ee08f7c016eaf9b57 *man/TOMplot.Rd
674cff64a1778713173951060078736c *man/TOMsimilarity.Rd
9755e793eafacb65fa03c9de103d591e *man/TOMsimilarityFromExpr.Rd
21b9aa92bf787c203518a52b9fc4c486 *man/TrueTrait.Rd
6b8731981e9a76be2f063815e0e5cd9d *man/WGCNA-package.Rd
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051b9a0b6e3d224367101ae392fdee22 *man/addErrorBars.Rd
2703e1c680bae62e4c5aaecdcfbbd424 *man/addGrid.Rd
cae8eaec92ed9b1e44b74b887bb1f2d5 *man/addGuideLines.Rd
8d7d42ffe2f393ffc0639eb753269012 *man/addTraitToMEs.Rd
35f4292c23662287707deba46bc6bc13 *man/adjacency.Rd
00f123bfb5d44dce62796916b1935ca3 *man/adjacency.polyReg.Rd
2ce0f3f36981f2e361fee7ae835ce24e *man/adjacency.splineReg.Rd
c7e701229b5800c1413850f3adf86a3c *man/alignExpr.Rd
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b7ea7d2217d2af07fb52698036093d99 *man/allowWGCNAThreads.Rd
f0af93e682c1e4f9ed671d5dc26b5c47 *man/automaticNetworkScreening.Rd
37f7ceee377056bc41dfc56146e44c22 *man/automaticNetworkScreeningGS.Rd
1117412198085a1e2ef0513c1468fec1 *man/bicor.Rd
93111bb5e42234852ced49447cd72fc6 *man/bicorAndPvalue.Rd
d3e975d3323a46bfaba290ebf3958e52 *man/bicovWeights.Rd
65ac3edef958fd60295b57734824b37f *man/blockSize.Rd
acd19796b11e28d24c53269d55385671 *man/blockwiseConsensusModules.Rd
0a604b7ca74932ffdd1cf1794a286591 *man/blockwiseIndividualTOMs.Rd
70aeb1e443e0b47ee125a95d328fda8c *man/blockwiseModules.Rd
14bb292cc65cc5a633416667c939a390 *man/blueWhiteRed.Rd
c5db45284538a7acbd1ac63d47eb4f8c *man/branchEigengeneDissim.Rd
bffaf7af5a6432a63c4d5513d71aef5d *man/branchSplit.Rd
816a353ce3eab35ade1dab4755fb16d6 *man/branchSplit.dissim.Rd
55eb98bbe4b7b70ca4d19863543f388a *man/branchSplitFromStabilityLabels.Rd
a670b576a031c5f51483aedd991e2cb3 *man/checkAdjMat.Rd
77c7d5fb58a8ec83f99ffbd83d4481dd *man/checkSets.Rd
277982294fa31dbbdf5945da95b5da25 *man/chooseOneHubInEachModule.Rd
2a26b1007bb5bfe78c8f9a1462d97011 *man/chooseTopHubInEachModule.Rd
5e958f0875508a71d357444f14b6179e *man/clusterCoef.Rd
a4dee3d59f71f9271fef45dbc884e50c *man/coClustering.Rd
39432228084e0ab40e2bdfba1971ef2d *man/coClustering.permutationTest.Rd
8f27170733d4c3702ef327e8093b0a4b *man/colQuantileC.Rd
4c084cc6c7c2586c1668bd5efe05ccf2 *man/collapseRows.Rd
36c92b8ae3dddd0ce0cf42916b20b47c *man/collapseRowsUsingKME.Rd
e3f8541b1a35d25d0767fca0ecd2a2b3 *man/collectGarbage.Rd
161399055c32a9010d1311b4987249b8 *man/conformityBasedNetworkConcepts.Rd
f02e1252a1f127594ba501f14727ad6d *man/conformityDecomposition.Rd
e85121993ab49874d23abcc709140235 *man/consensusCalculation.Rd
8cdeebac2a94ffacb18c92fb6e527950 *man/consensusDissTOMandTree.Rd
bdb934e0d83055b9761c0241ca0180cd *man/consensusKME.Rd
4ceee9e0b3e10f94f427290042ec11e5 *man/consensusMEDissimilarity.Rd
171634ec94492cd2a68a284c88329b68 *man/consensusOrderMEs.Rd
95b1b6e256a3f74f55c682502d317941 *man/consensusProjectiveKMeans.Rd
48c16095ea58df4111408b497f51fe30 *man/consensusRepresentatives.Rd
f45e188a899b1a2691b3cb78b016bb45 *man/consensusTOM.Rd
f825af557a042d3d1a13c7136c73be25 *man/cor.Rd
816782162c19cddf11f637162f4cb0dc *man/corAndPvalue.Rd
19cd6ac7f5c9891b6f6be8fd4034f484 *man/corPredictionSuccess.Rd
ddd90d6b54aac459bd8af75db5f5e8a6 *man/corPvalueFisher.Rd
087446ede74deb76c5952eab930bcc3d *man/corPvalueStudent.Rd
c52e6fc1e3b1b5bb616681de0984d7b5 *man/correlationPreservation.Rd
06d6988c8a2b30e720ed769496a5573a *man/coxRegressionResiduals.Rd
ebd1b5154444b4b1ddb110a91453596d *man/cutreeStatic.Rd
76d1215fee27707480cb5b2bb4436754 *man/cutreeStaticColor.Rd
aa9a53d1eeea331b86022a2f85238b9d *man/displayColors.Rd
ec2017b186d25a4707f66d4069f3f18c *man/dynamicMergeCut.Rd
eb024962b21b1535d8baa24fad961591 *man/empiricalBayesLM.Rd
46e29dcd87c583e3d449493600141016 *man/exportNetworkToCytoscape.Rd
932f2ec52d299afe70b469264398fa27 *man/exportNetworkToVisANT.Rd
4f2aee2616cd6c8a62a69753510b8911 *man/fixDataStructure.Rd
c5e50271ec9b716960866022c693589d *man/formatLabels.Rd
a0878ec86150188ec97abfc2a3533b2e *man/fundamentalNetworkConcepts.Rd
d69ac3a06e999ac8cf45b61d08ec5c5d *man/goodGenes.Rd
17eb5352731451be7dae79f756b6ae8d *man/goodGenesMS.Rd
afbfd5c284ce86c6e75f95f2dfc0c929 *man/goodSamples.Rd
24072962298295c943d614b02ab94295 *man/goodSamplesGenes.Rd
131cb00979475be142e82c5bb99268c7 *man/goodSamplesGenesMS.Rd
23decbc236061c9afe2727ebb9cb4abc *man/goodSamplesMS.Rd
c32af802f17f6a13a8d1f9022269b151 *man/greenBlackRed.Rd
557c9bef232a943268f060c32c6eb87f *man/greenWhiteRed.Rd
3dbab7906b875d026684c208e5cc0b0d *man/hierarchicalConsensusCalculation.Rd
d5fba86857964234d854fb62ac06fb39 *man/hierarchicalConsensusKME.Rd
d45876fcffb99e345b1353b829cb157f *man/hierarchicalConsensusMEDissimilarity.Rd
28f82b88c1e44da75ac010cc31cdb419 *man/hierarchicalConsensusModules.Rd
44b360435bd61784d65852b04521035b *man/hierarchicalConsensusTOM.Rd
bc67c46d2cb3bc73d19e04bf25200bce *man/hierarchicalMergeCloseModules.Rd
1282dbf2291264f8c714ba10c3c93b33 *man/hubGeneSignificance.Rd
c632e5c22f2b5c9698532bf74c190ff0 *man/individualTOMs.Rd
b2ddece70167d37c6ca795c56c6bbf51 *man/initProgInd.Rd
cda01d69dfff3eef4fcb79ce7119585f *man/intramodularConnectivity.Rd
500667bd49d01613aaaf03cd9831b042 *man/isMultiData.Rd
e4481641ca0ff1c2a648e3427f60ca2e *man/kMEcomparisonScatterplot.Rd
367c8efa7aff57c91f508f4d6993ee0c *man/keepCommonProbes.Rd
8e09108aa6a9aa781d9be2d546e838bd *man/labelPoints.Rd
4ed4ad8fb3eefb8fb3ebc018d50f24c1 *man/labeledBarplot.Rd
64bad1855c1a7bf8a7153886f406d94f *man/labeledHeatmap.Rd
c23d113bc424610eaa055485c9fc2fbd *man/labeledHeatmap.multiPage.Rd
4bbe76c64e465dd5d480f649370d8c31 *man/labels2colors.Rd
7fc163ef52818f5539648901398c4449 *man/list2multiData.Rd
5ed84fabbd891e85b12619f3530492c8 *man/lowerTri2matrix.Rd
14556752ea276b68851b24234c39bda4 *man/matchLabels.Rd
caad2f4cd29ed55a6c2ff090d7090ecb *man/matrixToNetwork.Rd
db4368efdc27de132013ce1c5ee8a952 *man/mergeCloseModules.Rd
50529471afd7336184fa7963507eaa5f *man/metaAnalysis.Rd
ffd97d40240349925bc44f5b1906d3e5 *man/metaZfunction.Rd
9282f0ac4a84e49c5e30f2cea1648eec *man/minWhichMin.Rd
7edcdce8f159ca0dfa75c6381c252900 *man/moduleColor.getMEprefix.Rd
5fe15072f66d4ca7175539b748f46396 *man/moduleEigengenes.Rd
f2e3e0719ca97a8adc05073ef8cce1f4 *man/moduleMergeUsingKME.Rd
271eded401e01f0e1e330f34d33afe22 *man/moduleNumber.Rd
2959dd49093ba6bbf2de6a0118bc9291 *man/modulePreservation.Rd
c6f0d7ed6ba44a899c2caba17db3d06f *man/mtd.apply.Rd
ae9dfd2181ad34cedaf894a1778b30ff *man/mtd.mapply.Rd
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6e335fdb204eab8ea890c2fa4406b4a7 *man/mtd.subset.Rd
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76676f3fdba6e9ca1d4ddccc3cc70fe9 *man/multiData.eigengeneSignificance.Rd
86a0d2d275b7629c1051e51c47c318c2 *man/multiGSub.Rd
620889218d4d5ed5e3aa6bb214005152 *man/multiSetMEs.Rd
9006d4cf6446d835d0c8c3bd9d3c72e7 *man/multiUnion.Rd
67f393ca0f70989e332b083e14673a64 *man/mutualInfoAdjacency.Rd
423948deb1875655f76b5aab3bd18ff3 *man/nPresent.Rd
5a9944c4bcd3dd9111df6d32dca279c1 *man/nSets.Rd
f254d52b87268800ff55ac2372a1a308 *man/nearestCentroidPredictor.Rd
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9de47712cf569e3de94cfff5f17a72ea *man/nearestNeighborConnectivityMS.Rd
3982e0f77862c8c9993a49f878258fda *man/networkConcepts.Rd
9b0d99621400d82fee9c9a34dde5c5eb *man/networkScreening.Rd
49cd57856511c6a7c0acd9014c10150e *man/networkScreeningGS.Rd
e59f9efc10e15a4eda2b89794842a426 *man/newBlockInformation.Rd
1a885dd7884e647bbe27bef91832ad10 *man/newBlockwiseData.Rd
980dbf21bbb9f54c5ddf222f64eb81bd *man/newConsensusOptions.Rd
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9ba4ff24a88a7d6bc72960f6d5bead4b *man/overlapTable.Rd
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df0a200d8b0404a897490031b0ee24b9 *man/plotNetworkHeatmap.Rd
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1a8b9c59e3adee6b48d2b8b2562bb2ef *man/pquantile.Rd
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638576053aa6de4e1d9bd76f17cd417c *man/preservationNetworkConnectivity.Rd
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9a5477827bbbd20d9cfbddc7f153bb94 *man/proportionsInAdmixture.Rd
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0a9c3ee7c033293b7796df9b7c1af2d0 *man/relativeCorPredictionSuccess.Rd
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89bfa864baec9426f6b31c481245e27a *man/removePrincipalComponents.Rd
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0e689841d94d164a9beeee6ddbd12e67 *man/sampledHierarchicalConsensusModules.Rd
6a79360f6ec29c84aeb933bc46b4ff91 *man/scaleFreeFitIndex.Rd
ea6d8d82152fae0924bc92d24c8ae02f *man/scaleFreePlot.Rd
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3eb76ea602de17259220fbfe2f99d748 *man/setCorrelationPreservation.Rd
6e5711f9ad7cc86add003a1e29e8db9f *man/shortenStrings.Rd
9cce33e7a075bc301deb614f4f23b8ed *man/sigmoidAdjacencyFunction.Rd
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dede43eacc71262d01c19b6f9db9dc51 *man/signumAdjacencyFunction.Rd
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