	X finished
	D drafted
	O outstanding

FUNCTION LIST FOR UMPIRE 2.0: CLINICAL EXPANSION:
O estimateClinicalParameters
	given a certain number of final parameters, estimate hit function, nPossible, block sizes
	outputs a list of suggested values as inputs for clinicalModel, clinicalNoiseModel, & clinicalHyperParameters
--->
D clinicalModel
	a CancerModel for clinical data
D clinicalHyperParameters
	blockHyperParameters with clinical defaults
D clinicalNoiseModel
	a NoiseModel with a clinically meaningful distribution
--->
O ClinicalEngine
	takes as inputs the ClinicalModel, clinicalHyperParameters, clinicalNoiseModel
	and desired % allocation of data types
	outputs an engine to generate clinical data through the rand function
---> 
O rand
	takes as input a ClinicalEngine
	outputs a clinical data list
		1. raw data
		2. noisy/continuous data
		3. binned data #1
		4. list of all input parameters
		5. clinical model/cluster IDs
		6. survival model

O addTransformation
	adds an additional binning structure to a list object with a given ClinicalEngine

ADDITIONAL TO DOs
O Tests
O Documentation
	O estimateClinicalParameters
	O clinicalModel
	O clinicalHyperParameters
	O clinicalNoiseModel
	O ClinicalEngine
	O rand (update)
	O addTransformation
O Clinical Vignette
O Paper
	Why did we choose Umpire and how did we expand it?

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OLD To-Dos:
Bump for R-Forge
Added .Rsave.out files for the test suite.
