ad57f30d23c951348f7a2fcb3e46b16e *DESCRIPTION
74b7e179b36fb281d1ecbddabb18fabe *NAMESPACE
b6c838280ea2a1069131faaa68ca484e *NEWS.md
b0a951ccc9783d99afb729a898ffb08c *R/C-generator.R
5fc806da49896cb199d19f2891c7e576 *R/SEIR.R
39b3298a66490eb8ac7fd32da37277c8 *R/SIR.R
91480114b31471b7a07f48e32742acb3 *R/SISe.R
9e148c88d8121bd42ca63bf3ac3b5fad *R/SISe3.R
8c68c4e0592925caee52b6dd6636fbd0 *R/SISe3_sp.R
6683b0a56c3c296843b1f8f96bc16dd8 *R/SISe_sp.R
e4a8a444bb3568803ff6c069faf7423c *R/SimInf.R
efa73141b0868bd3f5351a8af2f7456e *R/SimInf_events.R
30c57e5ce9458bc6aa8b696df86e2c65 *R/SimInf_model.R
60cbcf861ea1507346b750b85cc5924e *R/check_arguments.R
f94529d199f50bd756a2b2af768ab2fd *R/degree.R
03ad431588fed81e892f87467ae37c43 *R/distance.R
f0ed1dc875250f78c7b6dc5ae2d40a1e *R/formula.R
d3f1dd90e877a58ceab294fabd59c123 *R/init.R
6a0f9755486eb1660765971b22753d75 *R/mparse.R
7e7cda3cce4181d4a51b218305c3af9b *R/openmp.R
e723d81df6ea8d3258631decf1ca6d97 *R/package_skeleton.R
498733afb9a73f09918ac25ebdf4e3ac *R/plot.R
e151af7ce17270059dc7ae170e59fb30 *R/prevalence.R
d097455ba89cd16493131e53702c53b0 *R/print.R
f2bb00f72acbe9277586b74b7687f259 *R/priors.R
643da9c3a594d222e9dc5d9d2c3953de *R/punchcard.R
e73e6588f2f2d806e673bb9b4b09357b *R/run.R
8f93a111eeca5d1496a4f7c5e8e42723 *R/trajectory.R
359ab900af611b87de9f2a58c11982af *R/valid.R
09115427b41ebc08330ee6ab84f52e09 *README.md
9933c27be3ba9686a41ea85e855461dc *build/vignette.rds
2f827bf880da06156f16b13a6d1652bc *cleanup
87a88dbe3610b7b7dc36192c6126eed4 *cleanup.win
b12a4a6184252907ae4da8d0300f10c6 *configure
68dc03eb694ab822e45b9cc47804a672 *configure.ac
f1750ab7fa66b11bf9e6ac531b103b7d *configure.win
92d07847d90e0c2a505f41140889d1dc *data/events_SISe3.rda
00a854fbeab1b973edd5ca564af9d03a *data/nodes.rda
25fd46ad094359f08eb7c3678455b515 *data/u0_SISe3.rda
b02e5cd1ef2d8a43b24c8ad1b7716bfd *inst/CITATION
66531de6dda2dd6bdbb940f9caea0571 *inst/doc/SimInf.R
386f51da9e2b8af747d27e3925e5e955 *inst/doc/SimInf.Rnw
795cbbc9700ef930b67ce4fdcec78020 *inst/doc/SimInf.pdf
4f0fc97ee6b5f3ffab8ef332bc0c33d8 *inst/include/SimInf.h
4443cbef99db9b3e614aed546f105bcc *man/C_code.Rd
dfd62ca59457ada5b99848d5c3118c4c *man/Nn.Rd
a47d292df203301af2694a26495d17e3 *man/SEIR-class.Rd
2d8c8387de808ad4f7ed4f081fab17b7 *man/SEIR.Rd
a6ae90b9e763a7c46741007ad9adc29e *man/SIR-class.Rd
724faa5ee021fc33336bfabdd29d9ad5 *man/SIR.Rd
b3bb210d009dffbab40d9265d331cf4b *man/SISe-class.Rd
3d7913ba270d2365b9f6c3659a1f7cbe *man/SISe.Rd
28f77edd90ea2f6521d42f2eb9ea850a *man/SISe3-class.Rd
b9fc644b47efdc9962f73f99c3d688de *man/SISe3.Rd
3df212b9db57c4ca3da276d308dd23bc *man/SISe3_sp-class.Rd
13b6e1b1aeb0c79f4bbc06e52912353a *man/SISe3_sp.Rd
19234ba062b5b60a4b60f90453581201 *man/SISe_sp-class.Rd
0c312e067f588bff38558da2cc7d60aa *man/SISe_sp.Rd
da495176d5ced70f05809b85929ac1be *man/SimInf.Rd
891a84571aaa8d434fbf8edc0fdc9c33 *man/SimInf_events-class.Rd
04e1bd10cd8f916b3f04ed8a76805836 *man/SimInf_events.Rd
90bc1e638182119ef7abadaf5e11e955 *man/SimInf_model-class.Rd
66980b2bf60c612105862a586235c17e *man/SimInf_model.Rd
bc85e3bd43726e229bfcbdf93aa1a3e2 *man/as.data.frame.SimInf_events.Rd
0ea383430bcfb7922ebd7669de2cfe1e *man/boxplot-SimInf_model-method.Rd
22c473c91254da349a81a03aefc3940a *man/distance_matrix.Rd
d1724b8c957e47d4ebaa91cf344b04b0 *man/events.Rd
f1ebe44b436349c2f6b9a8548d74cf43 *man/events_SEIR.Rd
e96601c58a458cbdfd43bb57936e344d *man/events_SIR.Rd
53aecd79a6d855fd15788eae3ff31ba3 *man/events_SISe.Rd
8b21e925b1540e917bb13860ce55fd6e *man/events_SISe3.Rd
824aeb95f7c9e329c9649a2dccf8354e *man/gdata-set.Rd
6b15f2851cf5f87388471e37bd1886f5 *man/gdata.Rd
2b6370bbad4e79f1a73d66dad08718ed *man/indegree.Rd
f606091b079ab4672d456d4dbd1df17c *man/ldata.Rd
a67a892cc87c875c8fcaad954367183a *man/mparse.Rd
e348a0749078bb22ea3fb4142f42e0f7 *man/nodes.Rd
11d8ec84aa4dd0b59b4f25f4d49c5426 *man/outdegree.Rd
fa46d5afacd997f2cd8391cea736e8e2 *man/package_skeleton.Rd
25d9c5d76fde8b663e7f33d88064de40 *man/pairs-SimInf_model-method.Rd
be9e6bb7cab4274d8d72061a80d6c21b *man/plot-SimInf_events-method.Rd
40596925acb13b2720d537f5f156d03d *man/plot.Rd
840b3cbbe4cfe8e056d50bb1311699b5 *man/prevalence.Rd
17db596c21df46ac2d334c8b9c853bff *man/punchcard-set.Rd
14986a93e705d9f9f2765fc174896b2f *man/run.Rd
3015980b4821819d1683656be2cd36c5 *man/select_matrix-set.Rd
6687a719b987b3c13c5ef788724c7d95 *man/select_matrix.Rd
f0bec30cdcd8cd15f6a3bb1a96333ba0 *man/set_num_threads.Rd
23c1a3829c042740fb2dd295ca3d1307 *man/shift_matrix-set.Rd
1e9036e65f7380da6b9c9927f457b940 *man/shift_matrix.Rd
2c73ad8887f2c96d62b6d4e095e2199a *man/show-SimInf_events-method.Rd
257388de051bf06c8c278309eb287205 *man/show-SimInf_model-method.Rd
493bc971311b4a9604774de599eaeedc *man/summary-SimInf_events-method.Rd
31f50a358ec327c80d1ff9e10040f0a5 *man/summary-SimInf_model-method.Rd
33f1d8fb29d45dfc0c169c667f06d2e1 *man/trajectory.Rd
68a0a07e0d46c3128cc255405511d289 *man/u0_SEIR.Rd
d1ff7f76cbeb527a14bcd3e56e615535 *man/u0_SIR.Rd
c5b8577b739ff9b2aa577c3bff48031b *man/u0_SISe.Rd
d76178eba1080d49a2b2f64bff3cb255 *man/u0_SISe3.Rd
f54a107417da77c4378eed9dde321918 *src/Makevars.in
a437faccd1342c4247be7a01dede67ba *src/Makevars.win
15e9813224d748f5eb09b5fcde7f632c *src/SimInf-win.def
9143c9360284d9b17939bbb707f7f7b5 *src/SimInf.c
4f0fc97ee6b5f3ffab8ef332bc0c33d8 *src/SimInf.h
4d9426874698859a0806ff5ad02925b5 *src/init.c
72af1b1e41bf21e7b22f388a0e651be9 *src/misc/SimInf_arg.c
836d826459e79d7f527d886d54c304c1 *src/misc/SimInf_arg.h
66184f8b02b0539cfc1cd5dff49743be *src/misc/SimInf_forward_euler_linear_decay.c
77d20443391f53de9dff65a981ab8b9c *src/misc/SimInf_ldata.c
bc5364043d49e1a8bd83eaa513dfea00 *src/misc/SimInf_local_spread.c
e0b89b51bd8aa0861cbbff52866e6dcc *src/misc/SimInf_openmp.c
d48c5974b6d7ca4322cadda02e69b18a *src/misc/SimInf_openmp.h
0bbbacf84ee1f5c69bb0025331b638e7 *src/misc/SimInf_trajectory.c
5aca36a50c420debea0694c70181867f *src/misc/binheap.c
c8ca0fc44d539f89267da60825eecb28 *src/misc/binheap.h
5683514edd18c8089bc059ed3b5a9bdc *src/misc/kvec.h
e79672c34ae6b099c5e75e168a04e523 *src/models/SEIR.c
4dfdf5784ea5c5079b09f7e09c467fa5 *src/models/SIR.c
3f3d3704255751bbd2d71078f855c377 *src/models/SISe.c
581efd4f1432c40058aa819948114e01 *src/models/SISe3.c
94ec1b8ccba0e2083080818b7753d269 *src/models/SISe3_sp.c
dd2cd24d38487b2841e337e184157055 *src/models/SISe_sp.c
160aec6bd18c14cf7d0cd1b9aeff292a *src/solvers/SimInf_solver.c
d500f7cd411aeeb505e8dfc5fc3d3dd6 *src/solvers/SimInf_solver.h
df4f885e7bd953df193e6bd60942d98b *src/solvers/aem/SimInf_solver_aem.c
9c8d0734a8a26354362dcba682197fa3 *src/solvers/aem/SimInf_solver_aem.h
48ed0a069744e9f282866476ada524d2 *src/solvers/ssm/SimInf_solver_ssm.c
cc80697c3f0a2c065455cd049c1c2e60 *src/solvers/ssm/SimInf_solver_ssm.h
ca4dbe49c5c8939f99372206cb8b51c9 *tests/SEIR.R
8cf9c1d8b3f6053702095d4d8e5e62b9 *tests/SIR.R
71d667b2fc385858275924989826ae05 *tests/SISe.R
94f013f8bff05fd3cb5b36df52f9cfa6 *tests/SISe3.R
80eaf36a2c7b554cb94a8d5952a81ab2 *tests/SISe3_sp.R
304a3174ddea586fe5c0f4c22e41d5f6 *tests/SISe_sp.R
909470386fdf2abb101f6e88f6420e30 *tests/SimInf.R
8a5d0a628347fd5638303572033fb99b *tests/SimInf_events.R
5259d3ca43a42d9e00d243de1577da07 *tests/SimInf_model.R
e2d42c4d36bac01c326dbb8f32f8ced9 *tests/ldata_sp.R
59277f3004e3b128f8488c1d0ae34ad3 *tests/measures.R
e109ffc3ebda0991669578c9010b5345 *tests/mparse.R
8d26e2aa6e14d4ba3d33beaab4fafd0d *tests/package_skeleton.R
3cbb57967933de40d85be7e4569b95e3 *tests/phi.R
038e57cf80c7d8175cad79c7c7351e1e *tests/prevalence.R
e2501d972f2617fdcf307df8c71e6638 *tests/priors.R
20e6e9725bd33a60f547ed6503698fbb *tests/punchcard.R
181245572c1d6cf37d76a4b53118b140 *tests/sample_select.R
a5f112389120cbed27034ef952982cc1 *tests/solver_aem.R
801403e255fc6cb012ff35d693061bd5 *tests/util/check.R
386f51da9e2b8af747d27e3925e5e955 *vignettes/SimInf.Rnw
41eb7423ebd0ac4304da625dd6377357 *vignettes/SimInf.bib
5c04c8b8a805c78e452c7b7e9c23479e *vignettes/img/SISe_sp-prevalence.pdf
79dda74236a5213b9c0f36df73846ae8 *vignettes/img/enter.pdf
8e4592483c76825ee1f56177845973f5 *vignettes/img/exit.pdf
fb2a52d0e7f02a565aac0934eee1cb69 *vignettes/img/external-shift.pdf
ca278f60569a51c96a4a1fd11f2950fd *vignettes/img/external.pdf
186c3113fc6036f653ccdb2eb15d6ab4 *vignettes/img/internal.pdf
51032abc3157d6e606a9445a6a0df938 *vignettes/img/mparse-epicurve.pdf
cf55ff8869ea41f4364197f167a09ce7 *vignettes/img/overview.pdf
225aac95467bc4a8366bb1b19baab2f1 *vignettes/img/predator-prey.png
5a2c02478802a3e26064b3198b2d539f *vignettes/img/temporal-network.pdf
