f6f94c6657b8ad069b5d7904087830ad *DESCRIPTION
af2d2b7af2cd8b1c0fbc9bfef72bfe87 *NAMESPACE
c77e6792b895807030a96d86bdb7c802 *NEWS
23978e1727f9c5e82b541f42de70a2ad *R/SEIR.R
b69454c8411e8d4b1a37ecf600b05ca2 *R/SIR.R
355cc2fc100091ceacaa6e84c0dc5106 *R/SISe.R
42f0de4b802b861faa90187ff8edec79 *R/SISe3.R
6b44c04642c719538b261369870fafb5 *R/SISe3_sp.R
62b6acfcfab867bcff5809d9b38e5d10 *R/SISe_sp.R
3c32458f41d1837f7601c432adaf12d2 *R/SimInf.R
ff4bd9ce407462bbb99bd776424ae63a *R/SimInf_events.R
d92351fbc46397bd410a3a7f61930e1d *R/SimInf_model.R
c2048d83c9b4809b4906d748e61cb7c9 *R/SimInf_mparse.R
03306b720846761fea4724374afa89f3 *R/check_arguments.R
6d8ad5bede97fb0739fb161d2bbcfb01 *R/distance.R
18faf57ead560c2fd7625ecadde51bce *R/package_skeleton.R
ed195bbb9f60a08f5b6852e6946b380a *R/run_outer.R
58da5028cb18bbe25160866b19438d56 *build/vignette.rds
2f827bf880da06156f16b13a6d1652bc *cleanup
87a88dbe3610b7b7dc36192c6126eed4 *cleanup.win
b12a4a6184252907ae4da8d0300f10c6 *configure
672ccdd07d355d962453ece10276dd7b *configure.ac
d893e3cf2b8beda68aee4ac7dff5f0bd *configure.win
92d07847d90e0c2a505f41140889d1dc *data/events_SISe3.rda
ff4c69bfaa0057b4469c8784f825f329 *data/nodes.rda
25fd46ad094359f08eb7c3678455b515 *data/u0_SISe3.rda
e432744f9dd456ccebe15926bd595ee1 *inst/CITATION
7b6b10a8bceccaa675599c8848333cea *inst/doc/SimInf.R
0b3205dc96d00bf24203149c7e3659a4 *inst/doc/SimInf.Rnw
46d04cbdd9c3860ec16264401fe80c8e *inst/doc/SimInf.pdf
fbec101c1ff940a86e06afc394c7afa1 *inst/include/SimInf.h
8c4e5b1d4b9db093f7706df8f69bf62d *man/C_code.Rd
dfd62ca59457ada5b99848d5c3118c4c *man/Nn.Rd
a47d292df203301af2694a26495d17e3 *man/SEIR-class.Rd
383f6328c264d4a4b2ee1a757303d746 *man/SEIR.Rd
1231685cf10b9f54a2538741191d85dd *man/SIR-class.Rd
b2955ea31ec7e01f23758354a86b743a *man/SIR.Rd
b3bb210d009dffbab40d9265d331cf4b *man/SISe-class.Rd
5d4b828a7548bd794ecc80e444e4b87a *man/SISe.Rd
28f77edd90ea2f6521d42f2eb9ea850a *man/SISe3-class.Rd
398007604af30d423137b87fdec987d8 *man/SISe3.Rd
3df212b9db57c4ca3da276d308dd23bc *man/SISe3_sp-class.Rd
337d07927dd599d62c869b382513cf85 *man/SISe3_sp.Rd
19234ba062b5b60a4b60f90453581201 *man/SISe_sp-class.Rd
bc99abd8b1ec7a52c9f09df38b6c0ef9 *man/SISe_sp.Rd
1a20555de9fc0bce4f3e09c3eee0a004 *man/SimInf.Rd
5da00d9ab08e722c686bba487b89caf7 *man/SimInf_events-class.Rd
bf77d05f90fee678dfedf50734df34a8 *man/SimInf_events.Rd
fb98cc2e13a512fb6dee2f780445889f *man/SimInf_model-class.Rd
062e8e4c6999235377bc110668f56e29 *man/SimInf_model.Rd
11f88b6e62e91f68503cb2fcb38dc77c *man/U-set.Rd
5262adcf0032b220a1557bf705e7b51e *man/V-set.Rd
de2e3bb46d4e926dca5d38a70e76b289 *man/boxplot-SimInf_model-method.Rd
22c473c91254da349a81a03aefc3940a *man/distance_matrix.Rd
4f5bbe638d941c9bfc926ca96a21b50e *man/events.Rd
2be552c2052eedda595513064afade6f *man/events_SEIR.Rd
b484e831bf1538b319c2a458a766487e *man/events_SIR.Rd
f69870d8315d647f6f9c374ac808fecd *man/events_SISe.Rd
9d10ffe89c8c151e07ecf61be296e245 *man/events_SISe3.Rd
824aeb95f7c9e329c9649a2dccf8354e *man/gdata-set.Rd
6b15f2851cf5f87388471e37bd1886f5 *man/gdata.Rd
f0749cce0d3f81123b42f9977441831c *man/indegree.Rd
f606091b079ab4672d456d4dbd1df17c *man/ldata.Rd
614f7d293e622cd9fb723be1851e3543 *man/mparse.Rd
077a84ca81336942b6512248bb021c6a *man/nodes.Rd
f9fc2c1975b56cbc76a3cb96f30125d8 *man/outdegree.Rd
d6e2633ae160d3a610508a455b697f27 *man/package_skeleton.Rd
03b0af50740fec51ee291b8d38ae4805 *man/pairs-SimInf_model-method.Rd
fcef9eae831b2fffa83c31e094623c68 *man/plot-SimInf_events-method.Rd
3b2c9cd0329aa90743a089b1ced15c27 *man/plot.Rd
110eb4d9b30ae48034b99a8b212dd621 *man/prevalence.Rd
2f785cad97ad1cad2e8dd85b3c9d0ae2 *man/run.Rd
2fe799ad5d321522091f832bcd1d1d0b *man/run_outer.Rd
957a0b37f8ecd0cac69150b785976ad2 *man/select_matrix-set.Rd
4b13e5d83335bedb452cc68438efd805 *man/select_matrix.Rd
dcd1664ef7d459b57f4f6354919fa72c *man/shift_matrix-set.Rd
6a1a89e24deb552df2e7ce24033ebc94 *man/shift_matrix.Rd
cc9bbcff1f36126cd6cdb36e984bf12f *man/show-SimInf_events-method.Rd
af330bed59c23e75d84b94e5e31a8af9 *man/show-SimInf_model-method.Rd
96cd307f08b5ab3902ff0004db9b558d *man/summary-SimInf_events-method.Rd
cc244ec20b6ed750a54e05559b3d92ab *man/summary-SimInf_model-method.Rd
b37c5a0fe0da638af98b55038d280b23 *man/trajectory.Rd
572ade3d0e38d221c4c895c79b4d5048 *man/u0_SEIR.Rd
b08fde9ff563f7b5aaa088dd51191672 *man/u0_SIR.Rd
af0ae4636b9ed0d20346a052ccdafe1e *man/u0_SISe.Rd
734766430e758ac27a6355b2cfcb26a5 *man/u0_SISe3.Rd
16ae9c7315f9370c5d46e0b3907ecab7 *src/Makevars.in
0f2c1fbb79a9dc3e392225911369d6a2 *src/Makevars.win
f0659ce843b65ef68c2ab2bf975c0961 *src/SimInf.c
fbec101c1ff940a86e06afc394c7afa1 *src/SimInf.h
109bf11b1cf5cb86f2a5aeb29c9b1f4f *src/init.c
9ff9782866545637180084102eee8616 *src/misc/SimInf_arg.c
5bb30e6d5c04a8cc3ed63cecc4a96195 *src/misc/SimInf_arg.h
5344c96d6de0436023d1fad7f45c9a50 *src/misc/SimInf_forward_euler_linear_decay.c
257f147850fa9c193d7450d4a06c76eb *src/misc/SimInf_forward_euler_linear_decay.h
93980e8d3cb2af0d1c0b9166ff7385b0 *src/misc/SimInf_ldata.c
de04ae43dee47972a2ca6c392bdb4bae *src/misc/SimInf_ldata.h
07bab9f8ce25e5a22f0bc2c7b53d4620 *src/misc/SimInf_local_spread.c
50823382b6252e6417fc245ef168d771 *src/misc/SimInf_local_spread.h
2a655cc45f462215bbbdc79c2b95767b *src/models/SEIR.c
4c0af7f28e856213ef2e80a1a98d19d7 *src/models/SIR.c
fce14c7822a68da6708d6ef4c16f365e *src/models/SISe.c
76bb4978e3bc135a39f034dfee5b78a3 *src/models/SISe3.c
8c56d48597604c846d0ae932075cbce3 *src/models/SISe3_sp.c
08c5c9fb04141d2c0c64a39c5a3cacbe *src/models/SISe_sp.c
987da9f57383c9babf6c6cfd2ab8616c *src/solvers/SimInf_solver.c
d9ef9ea198460d0401fdbe40b2a687ad *src/solvers/SimInf_solver.h
5813603abe9eaca0599be5020e8dff91 *src/solvers/aem/SimInf_solver_aem.c
3275961c899d5cf93f4c48e236799781 *src/solvers/aem/SimInf_solver_aem.h
aa7134979ac49a8c26e412f309fc8268 *src/solvers/aem/binheap.c
e923b94cd0b22de109e304009a3b339e *src/solvers/aem/binheap.h
5683514edd18c8089bc059ed3b5a9bdc *src/solvers/kvec.h
df377dd944aae9dbb9939594bee224f2 *src/solvers/ssm/SimInf_solver_ssm.c
9941c8416038a955d1444374f10d080d *src/solvers/ssm/SimInf_solver_ssm.h
4bb85f22085be98895d6bb18988f5677 *tests/SEIR.R
e7cf9c59ed0424cec62722916ced4bc0 *tests/SIR.R
4d62e72b18be8396aeee7d736a3e7cba *tests/SISe.R
f3bf96d42d3ef1ff5d9461d44f99d144 *tests/SISe3.R
c83c59efbbe1124568c883c5062ec8dd *tests/SISe3_sp.R
1a5018fbc82208820f67cff270ec3c3f *tests/SISe_sp.R
4889b9f60473c409f17c4a5318cf103f *tests/SimInf.R
314d7f5aa4a0897f5145bfeb5eadec12 *tests/SimInf_events.R
e3d6780273d2ed250d2ee66ed355ccec *tests/SimInf_model.R
b942adecd5d2da762cf497dc56905dda *tests/ldata_sp.R
a51dde613618040b9cbd77ff3dc61587 *tests/measures.R
39f19f79642d7fc037825a533cfd904d *tests/model_builder.R
0c4ce7d3952fd7649a3555ea4c9ab061 *tests/package_skeleton.R
eb318e63f94252d59bbbc79444e7c0a6 *tests/phi.R
18043d447e3decddeb560ca0b780a400 *tests/run_outer.R
1e7449805b2655d83a9572c8cc958bc7 *tests/sample_select.R
bf420be1645c2503664e8654b30cf61e *tests/solver_aem.R
0d67a35c825a01f1f5a806b9294d28f1 *tests/sparse.R
0b3205dc96d00bf24203149c7e3659a4 *vignettes/SimInf.Rnw
5b1d37ac1f60f59e09cc498d0cfe5542 *vignettes/SimInf.bib
5c04c8b8a805c78e452c7b7e9c23479e *vignettes/img/SISe_sp-prevalence.pdf
79dda74236a5213b9c0f36df73846ae8 *vignettes/img/enter.pdf
8e4592483c76825ee1f56177845973f5 *vignettes/img/exit.pdf
fb2a52d0e7f02a565aac0934eee1cb69 *vignettes/img/external-shift.pdf
ca278f60569a51c96a4a1fd11f2950fd *vignettes/img/external.pdf
186c3113fc6036f653ccdb2eb15d6ab4 *vignettes/img/internal.pdf
51032abc3157d6e606a9445a6a0df938 *vignettes/img/mparse-epicurve.pdf
cf55ff8869ea41f4364197f167a09ce7 *vignettes/img/overview.pdf
225aac95467bc4a8366bb1b19baab2f1 *vignettes/img/predator-prey.png
5a2c02478802a3e26064b3198b2d539f *vignettes/img/temporal-network.pdf
