665367c0bc6005e2dc403faad9ec769f *DESCRIPTION
af2d2b7af2cd8b1c0fbc9bfef72bfe87 *NAMESPACE
a0b4ec6a0ff9236b8d232a0af20ab2a6 *NEWS
23978e1727f9c5e82b541f42de70a2ad *R/SEIR.R
b69454c8411e8d4b1a37ecf600b05ca2 *R/SIR.R
355cc2fc100091ceacaa6e84c0dc5106 *R/SISe.R
42f0de4b802b861faa90187ff8edec79 *R/SISe3.R
6b44c04642c719538b261369870fafb5 *R/SISe3_sp.R
62b6acfcfab867bcff5809d9b38e5d10 *R/SISe_sp.R
3c32458f41d1837f7601c432adaf12d2 *R/SimInf.R
b104271bf73baa1daeca8398de0bd50f *R/SimInf_events.R
9aac0b54b89086d24f138a164d3cf949 *R/SimInf_model.R
10338e2304beaadc6c0773afdd9136c7 *R/SimInf_mparse.R
45d8eed526c731919b061de353c97789 *R/check_arguments.R
b004433ea29b921e5ab3038f95c4ac28 *R/distance.R
54ff000498c4e839ae1318a0d40f32ce *R/package_skeleton.R
a9cd1b77062da24100b896de68698869 *R/run_outer.R
88d7542b83641c69148eee0c9df578ff *build/vignette.rds
2f827bf880da06156f16b13a6d1652bc *cleanup
87a88dbe3610b7b7dc36192c6126eed4 *cleanup.win
562c517cfd227dce2dc65c2062fd40ab *configure
8caf3b70637fb65b87a02c5d47444b00 *configure.ac
d893e3cf2b8beda68aee4ac7dff5f0bd *configure.win
92d07847d90e0c2a505f41140889d1dc *data/events_SISe3.rda
ff4c69bfaa0057b4469c8784f825f329 *data/nodes.rda
25fd46ad094359f08eb7c3678455b515 *data/u0_SISe3.rda
03faa169ee5105aa11739385702d8c82 *inst/CITATION
d0803af7f868b6a4c313960c3cb79b17 *inst/doc/SimInf.R
3d20feb18b57a09ee8d5dde770937211 *inst/doc/SimInf.Rnw
48bcff1e7f9dfe7cf7a9ac7f10844273 *inst/doc/SimInf.pdf
fbec101c1ff940a86e06afc394c7afa1 *inst/include/SimInf.h
8c4e5b1d4b9db093f7706df8f69bf62d *man/C_code.Rd
dfd62ca59457ada5b99848d5c3118c4c *man/Nn.Rd
a47d292df203301af2694a26495d17e3 *man/SEIR-class.Rd
383f6328c264d4a4b2ee1a757303d746 *man/SEIR.Rd
1231685cf10b9f54a2538741191d85dd *man/SIR-class.Rd
b2955ea31ec7e01f23758354a86b743a *man/SIR.Rd
b3bb210d009dffbab40d9265d331cf4b *man/SISe-class.Rd
dc85d3648681b70147ce59ff49c1620d *man/SISe.Rd
28f77edd90ea2f6521d42f2eb9ea850a *man/SISe3-class.Rd
c5a98c4cf1761a7b73eb47a6b47eee7b *man/SISe3.Rd
3df212b9db57c4ca3da276d308dd23bc *man/SISe3_sp-class.Rd
1fed16fee77647f9f2702573f5339907 *man/SISe3_sp.Rd
19234ba062b5b60a4b60f90453581201 *man/SISe_sp-class.Rd
bc99abd8b1ec7a52c9f09df38b6c0ef9 *man/SISe_sp.Rd
1a20555de9fc0bce4f3e09c3eee0a004 *man/SimInf.Rd
5da00d9ab08e722c686bba487b89caf7 *man/SimInf_events-class.Rd
bf77d05f90fee678dfedf50734df34a8 *man/SimInf_events.Rd
fb98cc2e13a512fb6dee2f780445889f *man/SimInf_model-class.Rd
062e8e4c6999235377bc110668f56e29 *man/SimInf_model.Rd
11f88b6e62e91f68503cb2fcb38dc77c *man/U-set.Rd
5262adcf0032b220a1557bf705e7b51e *man/V-set.Rd
de2e3bb46d4e926dca5d38a70e76b289 *man/boxplot-SimInf_model-method.Rd
22c473c91254da349a81a03aefc3940a *man/distance_matrix.Rd
4f5bbe638d941c9bfc926ca96a21b50e *man/events.Rd
2be552c2052eedda595513064afade6f *man/events_SEIR.Rd
b484e831bf1538b319c2a458a766487e *man/events_SIR.Rd
f69870d8315d647f6f9c374ac808fecd *man/events_SISe.Rd
9d10ffe89c8c151e07ecf61be296e245 *man/events_SISe3.Rd
824aeb95f7c9e329c9649a2dccf8354e *man/gdata-set.Rd
6b15f2851cf5f87388471e37bd1886f5 *man/gdata.Rd
f0749cce0d3f81123b42f9977441831c *man/indegree.Rd
f606091b079ab4672d456d4dbd1df17c *man/ldata.Rd
73da0943566dd371fbed3d5875e51867 *man/mparse.Rd
077a84ca81336942b6512248bb021c6a *man/nodes.Rd
f9fc2c1975b56cbc76a3cb96f30125d8 *man/outdegree.Rd
d6e2633ae160d3a610508a455b697f27 *man/package_skeleton.Rd
03b0af50740fec51ee291b8d38ae4805 *man/pairs-SimInf_model-method.Rd
fcef9eae831b2fffa83c31e094623c68 *man/plot-SimInf_events-method.Rd
92a7d2485a0e0d116a13455d5d960063 *man/plot.Rd
110eb4d9b30ae48034b99a8b212dd621 *man/prevalence.Rd
c0c2b1cd2f02392580bc3b77440b8e42 *man/run.Rd
2fe799ad5d321522091f832bcd1d1d0b *man/run_outer.Rd
957a0b37f8ecd0cac69150b785976ad2 *man/select_matrix-set.Rd
4b13e5d83335bedb452cc68438efd805 *man/select_matrix.Rd
dcd1664ef7d459b57f4f6354919fa72c *man/shift_matrix-set.Rd
6a1a89e24deb552df2e7ce24033ebc94 *man/shift_matrix.Rd
cc9bbcff1f36126cd6cdb36e984bf12f *man/show-SimInf_events-method.Rd
af330bed59c23e75d84b94e5e31a8af9 *man/show-SimInf_model-method.Rd
96cd307f08b5ab3902ff0004db9b558d *man/summary-SimInf_events-method.Rd
cc244ec20b6ed750a54e05559b3d92ab *man/summary-SimInf_model-method.Rd
b37c5a0fe0da638af98b55038d280b23 *man/trajectory.Rd
572ade3d0e38d221c4c895c79b4d5048 *man/u0_SEIR.Rd
b08fde9ff563f7b5aaa088dd51191672 *man/u0_SIR.Rd
af0ae4636b9ed0d20346a052ccdafe1e *man/u0_SISe.Rd
734766430e758ac27a6355b2cfcb26a5 *man/u0_SISe3.Rd
16ae9c7315f9370c5d46e0b3907ecab7 *src/Makevars.in
a86c8a0ce041df394ee31178bbb5e5b8 *src/Makevars.win
89c3ec7dbe7a6aeb883533fc4c5d7bcc *src/SimInf.c
fbec101c1ff940a86e06afc394c7afa1 *src/SimInf.h
109bf11b1cf5cb86f2a5aeb29c9b1f4f *src/init.c
9ff9782866545637180084102eee8616 *src/misc/SimInf_arg.c
5bb30e6d5c04a8cc3ed63cecc4a96195 *src/misc/SimInf_arg.h
5344c96d6de0436023d1fad7f45c9a50 *src/misc/SimInf_forward_euler_linear_decay.c
257f147850fa9c193d7450d4a06c76eb *src/misc/SimInf_forward_euler_linear_decay.h
93980e8d3cb2af0d1c0b9166ff7385b0 *src/misc/SimInf_ldata.c
de04ae43dee47972a2ca6c392bdb4bae *src/misc/SimInf_ldata.h
07bab9f8ce25e5a22f0bc2c7b53d4620 *src/misc/SimInf_local_spread.c
50823382b6252e6417fc245ef168d771 *src/misc/SimInf_local_spread.h
2a655cc45f462215bbbdc79c2b95767b *src/models/SEIR.c
4c0af7f28e856213ef2e80a1a98d19d7 *src/models/SIR.c
fce14c7822a68da6708d6ef4c16f365e *src/models/SISe.c
76bb4978e3bc135a39f034dfee5b78a3 *src/models/SISe3.c
8c56d48597604c846d0ae932075cbce3 *src/models/SISe3_sp.c
08c5c9fb04141d2c0c64a39c5a3cacbe *src/models/SISe_sp.c
9f10d51fea4e6f241a16bbe39d437b9e *src/solvers/SimInf_solver.c
3cae9ef3517e5845275e7569b4473390 *src/solvers/SimInf_solver.h
6f3ae75d95ee5c9eed5686dd1995e885 *src/solvers/aem/SimInf_solver_aem.c
3275961c899d5cf93f4c48e236799781 *src/solvers/aem/SimInf_solver_aem.h
aa7134979ac49a8c26e412f309fc8268 *src/solvers/aem/binheap.c
e923b94cd0b22de109e304009a3b339e *src/solvers/aem/binheap.h
5683514edd18c8089bc059ed3b5a9bdc *src/solvers/kvec.h
5f7c1f46b2389509ea98c647c5dcbd75 *src/solvers/ssm/SimInf_solver_ssm.c
9941c8416038a955d1444374f10d080d *src/solvers/ssm/SimInf_solver_ssm.h
dc0ddb18d57f39109914fa339e8e9cd6 *tests/SEIR.R
fa40bc9c0c24ebc48fbc4839b8a709b4 *tests/SIR.R
4eb27d9bf1a7b2ac45963174314b5543 *tests/SISe.R
4a7129cbfdc8456739cd99a53dc00efd *tests/SISe3.R
619cb8bd710289e407b0f1a99f90f225 *tests/SISe3_sp.R
1cefe6bf5b381b9b13b68e11ea0b3d41 *tests/SISe_sp.R
4889b9f60473c409f17c4a5318cf103f *tests/SimInf.R
e69d9cd08581efffa24d446f20069b4d *tests/SimInf_events.R
de8ffc8054dd11a72a3d328c5aeb81e9 *tests/SimInf_model.R
b942adecd5d2da762cf497dc56905dda *tests/ldata_sp.R
a51dde613618040b9cbd77ff3dc61587 *tests/measures.R
b60e3983e31420143b51332e3ddb3972 *tests/model_builder.R
5b48693fd0f484637a62c44d6def32fe *tests/package_skeleton.R
eb318e63f94252d59bbbc79444e7c0a6 *tests/phi.R
18043d447e3decddeb560ca0b780a400 *tests/run_outer.R
1e7449805b2655d83a9572c8cc958bc7 *tests/sample_select.R
bf420be1645c2503664e8654b30cf61e *tests/solver_aem.R
0d67a35c825a01f1f5a806b9294d28f1 *tests/sparse.R
3d20feb18b57a09ee8d5dde770937211 *vignettes/SimInf.Rnw
45cb4ddcf94740138af4f8fb297a029f *vignettes/SimInf.bib
5c04c8b8a805c78e452c7b7e9c23479e *vignettes/img/SISe_sp-prevalence.pdf
79dda74236a5213b9c0f36df73846ae8 *vignettes/img/enter.pdf
8e4592483c76825ee1f56177845973f5 *vignettes/img/exit.pdf
fb2a52d0e7f02a565aac0934eee1cb69 *vignettes/img/external-shift.pdf
ca278f60569a51c96a4a1fd11f2950fd *vignettes/img/external.pdf
186c3113fc6036f653ccdb2eb15d6ab4 *vignettes/img/internal.pdf
51032abc3157d6e606a9445a6a0df938 *vignettes/img/mparse-epicurve.pdf
cf55ff8869ea41f4364197f167a09ce7 *vignettes/img/overview.pdf
225aac95467bc4a8366bb1b19baab2f1 *vignettes/img/predator-prey.png
5a2c02478802a3e26064b3198b2d539f *vignettes/img/temporal-network.pdf
