7b78761e588d8ba98629213a7cc26210 *DESCRIPTION
a0f621aa5ef981d652da4667c41c58fb *NAMESPACE
656d54ed64d9de44c638c734d19916d2 *NEWS
4171b6a6c1974d7a7b7573aa9af487e9 *R/RcppExports.R
fe17ee8275dd4d4651b8109c73252ee5 *R/fastphase.R
60d4037b054ecab53fdb5d04d8b414e5 *R/knockoffs.R
12f532ae55a3d9b4f298bce0d3acd425 *R/models.R
d0efc3f52306757e0b18f73580f6a12b *build/vignette.rds
b27c175b9693d570cfeaeefd9893f881 *inst/doc/SNPknock.R
a17fa4983861bb8620ffd8005d2fc7ce *inst/doc/SNPknock.Rmd
7a06f17ef90ad1dfc2bb1403c569f04c *inst/doc/SNPknock.html
38680d2384dfc9d62e2c3a776febb077 *inst/doc/genotypes.R
ce367d06958edccfc1137b2cbd9f1eb8 *inst/doc/genotypes.Rmd
781e2185020bca42c473c10fb27aa01d *inst/doc/genotypes.html
a5e937d9e990d286d83bf0715b2a4dea *inst/extdata/genotypes.RData
8b4eeea7fce021cbee279876b1a028d5 *inst/extdata/genotypes.inp
93104f971d719e9ef18471472e0a33f6 *inst/extdata/genotypes_alphahat.txt
c161a4cceb9ccaa28e22353ed6e96cf8 *inst/extdata/genotypes_origchars
43a89ff303ad785e1eba1d2a9a155790 *inst/extdata/genotypes_rhat.txt
e4ac8874c6e110ea3ee81f18b0924fdb *inst/extdata/genotypes_thetahat.txt
2683882f66c82b857679cd27a40a24fa *inst/extdata/haplotypes.RData
164a829c6f41ffc2ffa91359131a0713 *inst/extdata/haplotypes.inp
28c1f6b3eaa07937fb8e074d89f4b24c *inst/extdata/haplotypes_alphahat.txt
b7d9210d736b49a53cbf1e3257ba7dac *inst/extdata/haplotypes_origchars
14cd5f46d827bcac49af80309f844920 *inst/extdata/haplotypes_rhat.txt
60a868b2dadd85440bf34f3c682a76ad *inst/extdata/haplotypes_thetahat.txt
67116a2c362259f9f1ea5fc6009287b8 *man/GenotypeModel_wrapper.Rd
acc6a3739adfd16e48a2b52e2fc0fad0 *man/HaplotypeModel_wrapper.Rd
882751e48db0c25b416e2ce5206037a8 *man/SNPknock.fp.loadFit.Rd
cf740696c6b31102059c485183f482c8 *man/SNPknock.fp.loadFit_hmm.Rd
6e8dc38483c8bdcfaac5250cc9188e4c *man/SNPknock.fp.runFastPhase.Rd
6647a01aa076e948b1090773f541e5d4 *man/SNPknock.fp.writeX.Rd
35da9930646b6e065916eeeee933b216 *man/SNPknock.knockoffDMC.Rd
9e7017da00bd92c078a2718fd9a4b774 *man/SNPknock.knockoffGenotypes.Rd
b047ea538c82d46119bd674d2c8e44fd *man/SNPknock.knockoffHMM.Rd
6badfdc3d878c934f8bb56b4cc4feac0 *man/SNPknock.knockoffHaplotypes.Rd
c2feec2511ba3e2b8dc57c691af7500c *man/SNPknock.models.sampleDMC.Rd
ad773f0196af6f5d4e00b8dc6a203e93 *man/SNPknock.models.sampleHMM.Rd
503bf3a7adf4bdec234f4762989176b5 *man/assemble_Q.Rd
1a6413f885a0be88dea6096fa027246d *man/assemble_pEmit.Rd
89b6dbe7ce99dadb840ee12c7ee582ea *man/assemble_pEmit_phased.Rd
e44db92f5a107edb14028757e04b6ad3 *man/assemble_pInit.Rd
732ac3fdaa0f1d53e6048413ab693d8d *man/assemble_pInit_phased.Rd
e36e1480dfe681cc1af2ef4c37e41ad1 *man/compute_Q1.Rd
3c33f515ead0c49412d4a9d8e3fb77e6 *man/knockoffDMC_wrapper.Rd
b7a805d78faa91fa801fceb529dc33bd *man/knockoffHMM_wrapper.Rd
2aef65ca41b1d502830fa7dd7b19449d *man/loadEMParameters.Rd
e4e260e7a8842e1aa89cfca394f9c982 *man/rand_weighted.Rd
e3d3cb360fbfdb3c6974e14eb5f09870 *src/Makevars
bbff9b2b2346c56ba0b8faa3c4c06b8a *src/RcppExports.cpp
6b6ec79e93b84deca3ae7d55b480ebef *src/dmc_knock.cpp
80c4fc639a17ba28ec645e64bb1df442 *src/dmc_knock.h
639c650800f36c51526af3769e4f7b15 *src/genotypes.cpp
455140a201d477617a2130fdde8dda33 *src/genotypes.h
df54a1e3faf422cd0b1dfd0ecd97ff82 *src/haplotypes.cpp
8e93a5873a417b6352e94b1a2ca24a53 *src/haplotypes.h
0c9dafc3ad49fe8ea4201b4a31031327 *src/hmm_knock.cpp
37d19485be6863d776c06c67fa1a7a2f *src/hmm_knock.h
753c6c37549736c1c118a57236c3d92c *src/interface.cpp
009778199c9cf7f99f2c2834c188a9dd *src/interface.h
a5e2d7132acad6458e1988e2461de63d *src/knockoffs.cpp
a3c1f0f73dd57333cde4e920d4e790a3 *src/utils.cpp
e5d2b24c2a42bd18773d48efea392111 *src/utils.h
620be378238bc8ec02541939e0280233 *tests/testthat.R
1cfb66354fe00f78d69ac6b793fbb38c *tests/testthat/helper_test.R
6e4f3613690eba303357ce0535ba52f1 *tests/testthat/test_knockoffs.R
a17fa4983861bb8620ffd8005d2fc7ce *vignettes/SNPknock.Rmd
855207fbabf82516c7a2583d21f077ea *vignettes/bibliography.bib
ce367d06958edccfc1137b2cbd9f1eb8 *vignettes/genotypes.Rmd
