576fd627b3337681064b3f3ae23dd269 *DESCRIPTION
6755411bf5777a5065339d2ca91f89c4 *NAMESPACE
d0a396ca4ce987f1597404f0deb82a88 *R/Bonferroni.sig.R
64da403e5e1b0b15d9e35aad3b2f60f2 *R/GenomicControl.R
6363790c5e95c9ec903dc9d7b35b05b5 *R/GenotypeRate.R
786d12f12b1533af500aebe972a3f141 *R/LD.R
4f52c6c6bf0db36876ab7cb39662a6e7 *R/SNPHWE.R
7537d25fc88b295848ab2e08e6a24010 *R/Table.N.Per.R
894a122f696bbe3ebbf6dfa087a59396 *R/Table.mean.se.R
b3982e0f299bc19f477ca6267b6c0f0e *R/WGassociation.R
259089dbcc725ebac62ee596a497fa58 *R/WGstats.R
8cc52f4a350e554198859dabcf613903 *R/additive.R
33de0422f2810c9cdfe3a8945d90010e *R/additive.WGassociation.R
1a9055e622b30fe8f973386c843c5103 *R/additive.default.R
6101ad867da5ea8d907af02b52a0046f *R/additive.snp.R
3d2d6d545b38622754a5e9b200466379 *R/as.snp.R
c8affcade857dc8ecfa1a8a93653bc09 *R/assoc.R
4ed2136113683a74a36cff4278b952a9 *R/association.R
37243eadc36fd5624a6e184a8c72db20 *R/association.fit.R
8bcf1777cc2459950695c8c0835e4114 *R/c.WGassociation.r
38d9c453236d44316c874922f812cdf4 *R/codominant.R
86ff273413f6bdd42ddac557b5939903 *R/codominant.WGassociation.R
9796ab26b66e9de2bbf05e6fd274e6b3 *R/codominant.default.R
46b398e8724250b2da7a9f5d3ab12dd1 *R/codominant.snp.R
7e251364711256725b5326df86375a11 *R/crea.lab.R
a8eec990efb7817203f10337b2004e50 *R/dominant.R
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0fa2b00da185e6f3cb208eafda81a9f4 *R/dominant.default.R
6a303979a56164aa645aa7cf8c16e0b0 *R/dominant.snp.R
6feadabe06475a1f7a9fe927b94b45dd *R/expandsetupSNP.R
f738d542c0c7f78c704623aac149ec05 *R/extractPval.R
03018fd47f296d68f758ff483ccd16ba *R/extractPval.i.R
1fffc25b641f477fe32971b710eb36d6 *R/getGeneSymbol.R
a88eb0e159225dfa9e56878b224c92ab *R/getNiceTable.R
f14a08e8ffbb954869fe465b9e3ae3ad *R/getSignificantSNPs.R
630be123992ba1cb167d7083f6da581a *R/haplo.inter.fit.R
66ad2ab6bbad0ef049b9ab33e9cee70d *R/haplo.interaction.R
4d8ee49979f13c96c4a2ee55652630fe *R/int.R
b0368aceb2eea9c3a26c172bc8ed2041 *R/interactionPval.R
d5eddd4b9a42521d85732c35e4739df0 *R/interleave.R
6d78e5519c9e99ae541185f8ef49c3ce *R/intervals.R
c025ff2dd7f147a10341192ae55913c5 *R/intervals.dif.R
fdf7b307b4385f64662a90c980556785 *R/intervals.haplo.glm.R
21df1f3b660c6c15973d05d93f3a8d62 *R/intervals.or.R
7896f5c0d407da0b3169451e404354e5 *R/is.Monomorphic.R
4efc859187a6f1ce2fc28860ae4a1d20 *R/is.quantitative.R
fa774fe23f2de8b7112831e6d7dd8fff *R/is.snp.R
aa733f77663ee090bf9e8a131ed797f2 *R/labels.WGassociation.R
38920c256c290d7a42fec92c83a2ba02 *R/labels.setupSNP.R
3d5f0f93068f1f28bb0bd89b63c3dd94 *R/make.geno.R
9a0b4747a0a573c18a26258fd715856b *R/maxstat.R
035b044b3f72071b8b3e1c76ff77842c *R/maxstat.default.R
b0e342158ca99b0731788373425c74ea *R/maxstat.matrix.R
e791d9d1276382b804d387c205149232 *R/maxstat.setupSNP.R
b0c3ce21f0ac8c2f10004255f69ce4da *R/maxstat.table.R
ef630bd85ad293880b864ed69dfb11a1 *R/modelTest.R
e3d57749c0d478eb25738bf519a43c17 *R/odds.r
2f35297b3f30816b6a6f09c3c2a48182 *R/orderChromosome.R
6b3957e35580c90a1d3fbf4fbbc4ae76 *R/overdominant.R
8e125a8f1bef7e818c8d0f47567f7e0e *R/overdominant.WGassociation.R
1c89fe2e02298a4329b15842e106be6c *R/overdominant.default.R
95416229fe259a9264bd951773519be9 *R/overdominant.snp.R
8cba4c8c001b0d85b0342039267c90e7 *R/permTest.R
d3d443d1bf55b386e5c2fbd970be2221 *R/plot.SNPinteraction.R
68998d2dbc9658861444dad7eaac36c4 *R/plot.permTest.R
38c340b5fca3c09fc76d23081807f3c9 *R/plot.setupSNP.R
1370eb00322dce32090997c3e42a0bc0 *R/plot.snp.R
4395904626b34d44f09a537a780d78eb *R/plotMissing.R
e06f847839d0b40f952bd98066590d45 *R/plotWGassociation.R
2e455eae93e62c497d978cbb7bbad7de *R/print.LD.R
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6b3b8518d16e4597ec5203a04a35e483 *R/print.WGassociation.R
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7a74845efd685aea900fb5b2e9f768cd *R/print.intervals.R
52f38f9d1be9aeeeaf9eb9a0ad6aa169 *R/print.maxstat.R
5af226b3eac42356da11dc97a375f8db *R/print.permTest.R
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3ec3382d17e8093292d12109e2154132 *R/print.summary.snp.R
c7b2e2609c89bc411291f270feed4313 *R/print.tableHWE.R
12e91836f56a918435f8eaa4d7221b06 *R/pvalTest.R
4c9df5a81c5d3ddd9532987dafeba1d6 *R/pvalues.R
6be2f1641846695e90dfb159d0170c61 *R/pvalues.WGassociation.R
8ea1bedde4e28898f976582893d3b257 *R/qqpval.r
8f6233cc9e4291a4d44b51df554da475 *R/recessive.R
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5ce1f75609639d08dbd3768bbd6ecc53 *R/recessive.default.R
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c87fb5b73a4a5b23b297a1141583cef4 *R/related.R
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ec98758a691fc96827bbde51798aecec *R/scanWGassociation.R
8c3f9fcc868712a8c00d4bc8646d4ff9 *R/setupSNP.R
81bd7d0184f4de9dada49a6ef169b4a7 *R/snp.R
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54306813b9033bd7aee35272576f1ec2 *R/summary.WGassociation.R
2835de83105bf3601d6ddc8c73fd9420 *R/summary.haplo.glm.R
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7d641b3e4f4752275adb48d0d0bc8b2b *R/summary.snp.R
04a0c787085aa15a2e47d681b1bc48fb *R/table.corner.R
26f848be4117b42e971d163ec6cfea4f *R/table.interaction.R
4c5cc9d88e48c89d9c46c2be95f5857d *R/tableHWE.R
d86ed58f6d2721de80c0434120c51b2e *R/togeno.R
dd19f71968800f0480eade0a63b4ac05 *R/trim.R
75640b39aa941aca3d0a16c8a5dab132 *R/z$.setupSNP.R
60d7ac5edef25fa3425500f2698361a1 *R/z[.WGassociation.R
cc46325f3cfecd444425d26c3e4594d3 *R/z[.setupSNP.R
fcbcb885f043fb959f1bb5784a65dbbe *R/z[.snp.r
230775aba71bd03f2167593fee8fb643 *R/z[[_-.setupSNP.R
1c13b441dc0feeb8a8e8536c6553f2e3 *R/z[_-.setupSNP.R
779ffad0406bfb34fb0fd8ea1930bed4 *README.md
bdca65704b1dc9184b5a49dd3b702eea *build/vignette.rds
838eabf2dd763270a558c794e261aed7 *data/HapMap.SNPs.pos.rda
b54c146dd48f7c4948ce5b9f37b5981a *data/HapMap.rda
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2f0e826e5c9e7d2dda8fb8d3acc86e51 *data/resHapMap.rda
9da923fd1a2a500b6222ceb996681d6f *inst/doc/SNPassoc.R
6aabae3a6bda73c61789347209ad67e0 *inst/doc/SNPassoc.Rmd
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b1e4ccf0316b8a921be19236296d338b *inst/docs/changelog.txt
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7a4bf22e165f45a0c9f397d04bb4caa2 *man/GenomicControl.Rd
c4ab72a4872ecc51b590ad1476e221a5 *man/HapMap.Rd
900a5672a3a3728e45bdd5478c3a1138 *man/HapMap.SNPs.pos.Rd
872dd4069933148f2b986571af7de4ec *man/LD.Rd
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1b5db7ffcb59888723d3e446aff26e2e *man/SNPs.Rd
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35466e0e43254f091e64bfec81ad56cc *man/TableNPer.Rd
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01dc1a479bfd552603b8caba8a0f5bb5 *man/WGassociation.Rd
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1b24a9676146a2ae68e897b8013ad44a *man/getGeneSymbol.Rd
120c47527970370a32597196f2bf804b *man/getNiceTable.Rd
6eab0f29b5255084427e0db4ba49439a *man/getSignificantSNPs.Rd
06bad0992b4d7da439f69112e35d8c98 *man/haplointeraction.Rd
b720a161a5581c95ed271cb64946308c *man/inheritance.Rd
c4cafa8ad35a5e372c4841a49dc49573 *man/int.Rd
a620250a11280363302e0149c679e270 *man/interactionPval.Rd
e2bda800adf30c7da9fbadc2df290f00 *man/intervals.Rd
72fb8117808aef9c8f113975a7741869 *man/isMonomorphic.Rd
b8dd8ff22c530e6a1b67bbf1a1b54449 *man/makegeno.Rd
c1bc716499a8c26736d1e2670d5c8a14 *man/maxstat.Rd
8873985686928a97a436cf00e432a158 *man/odds.Rd
78eeca864c243bc94afe92eb35b89c9a *man/permTest.Rd
109d65b58d05da2ce2437148c5631002 *man/plotMissing.Rd
6666f684fbb8a99a427bf8ef4e9a0757 *man/plotWGassociation.Rd
1470e78d19a93f09dbe7b832f6965903 *man/qqpval.Rd
0af7764a22c1e0120a1b76b3961ae418 *man/related.Rd
8d0b3ccdce8ca2d6a46cc13b4dc55850 *man/resHapMap.Rd
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4b5d0c122ee656fee0a0087b2b5fa7f2 *man/setupSNP.Rd
47d0a5c94684ceec2dfe784e0b32e877 *man/snp.Rd
62bc52ba89758149ac2c714f33c23365 *man/sortSNPs.Rd
04c88bd8cb277a4fc4a7708b1a9c16f7 *man/tableHWE.Rd
6aabae3a6bda73c61789347209ad67e0 *vignettes/SNPassoc.Rmd
02811754e339134dc2907a63893e8bca *vignettes/multiomic.bib
