0a44dab944fd84ca16559fe887c3660e *DESCRIPTION
f446f5833a03ff17a7a4de0193a6ffd2 *NAMESPACE
d7229fe184b2883be553faa89beb57e8 *R/RTIGER-Class.R
ba6bdd10eb5af539658e15f2c5f5d345 *R/aux_Fun.R
08f10781176f6beffed992aa08f7b20b *R/data.R
ed689d0d8200864a5d026639ac3bcd78 *R/developer.R
260e2e77803ee2327734872ad9eac5ed *R/export2IGV.R
8ff2e377fdd5eabb4fd06b5a0eafd44c *R/fit.R
933ce9ab08e159f58acc646ccae1df7b *R/globals.R
34760da7d97ec5c5a027083f9b4c4aaa *R/loadfun.R
edd36c1292e54c0089b5ad7aad1f1995 *R/mainfun.R
f400e7b6d96c28a92f1dfe35ad659548 *R/plotCO.R
71da244d6d67cea2148f56deebaa5e3d *R/plotGenotype.R
e7f8191ee66f794eead6516d53fda42b *R/runningFreqPlot.R
9c06c861064ee5b31b08488d5f9fff15 *R/setupJulia.R
f737901bac5e9b89e4bdb6e758ee2026 *R/state_ratios.R
b6a9af58ced7ae991302122adaeba942 *build/vignette.rds
6c5083e8bf923f76fce350fc86a0dbe2 *data/ATseqlengths.rda
e247b4845acc6410927d15a1008a361a *data/fittedExample.rda
00174fe14a3cecf5352aa1b4be03e0e2 *inst/doc/RTIGER_Markdown.R
06ff7146351d1227f2768447c08523b3 *inst/doc/RTIGER_Markdown.Rmd
b924d87922d2c18d37a8c7a331a0b7d4 *inst/doc/RTIGER_Markdown.html
8312d1ce5c2e1dcc9e42df237790571a *inst/extdata/sampleAA.txt
cb9f998b5fa6adac5b2765e72b10fb7d *inst/extdata/sampleAC.txt
b1388c6512767e9e968c419de0c15fb7 *inst/extdata/sampleB.txt
bdf506eb6a8c2f96655ab7f5b4b642c5 *inst/julia/AuxilaryFunctions.jl
df54b862d05ec6077c856d80e343a4f1 *inst/julia/rHMM_methods.jl
fae48b8c7da2baa1fa164ed7416b534b *man/ATseqlengths.Rd
f1fa225fbb85f24ee3b0d96537bebfc2 *man/RTIGER.Rd
57a51aa9535ba8e5bb76866b264ae117 *man/RTIGERDataSet.Rd
e24219c9d77f51077fb61709cc18739d *man/calcCOnumber.Rd
f7c039fdefc2f31cd2099abeba632881 *man/dev.Rd
8071de10132b0822b37a5820cf31b94b *man/fit.Rd
4edc94822afcadac15fb236bd40e6286 *man/generateObject.Rd
27492471ba2a8c67b9e9fcf90e8fce52 *man/myDat.Rd
bc9878521760c7431dd293a19548089f *man/plotCOs.Rd
021978a3f298f4a57a2fde7b3a911d24 *man/setupJulia.Rd
6dc3e9ca6b0ffcde2343fb9071447c70 *man/sourceJulia.Rd
06ff7146351d1227f2768447c08523b3 *vignettes/RTIGER_Markdown.Rmd
