2010-02-07 R-forge revision 52

	* R/globals.r, R/siena07.r, man/siena07.Rd: 
	new silent option with no output.
	* tests/parallel.R, tests/parallel.Rout.save: suppress progress
	message output and include prints of results.
	
2010-02-04 R-forge revision 51

	* data/allEffects/csv: Bug in covariate behavior effects
	* configure.win, src/Makefile.win, src/Makevars, src/win32/Makefile:
	changes for Win64
	* r/effects.r: minor fixes to getEffects function (default effects
	for multiple dependent networks.)
	
2010-01-28 R-forge revision 48

	* R/simstatsc.r: fixed bug in sort order of effects

2010-01-26 R-forge revision 46

	* man/RSiena-package.Rd: new version number

2010-01-19 R-forge revision 45

	* NAMESPACE, R/effectsDocumentation.r,
	man/effectsDocumentation.Rd: new documentation function
	* inst/doc/effects.pdf: output from the documentation function/

2010-01-18 R-forge revision 44

	* src/model/effects/various.cpp, .h: removed superfluous files

2010-01-18 R-forge revision 43

	* DESCRIPTION: new version 1.0.9
	* NAMESPACE: new utility functions
	* data/alleffects.csv : new behavior effects, user-specified
	interactions.
	* R/sienaeffects.r, man/includeEffects.Rd,
	man/includeInteractions.Rd, man/setEffect.Rd: utilities to update
	effects object.
	* R/effects.r, man/getEffects.Rd: new parameter for number of
	behavior interaction effects.
	* src/model/effects/many: new behavior effects, user-specified
	interactions.

2010-01-15 R-forge revision 40

	* R/print01report.r, R/sienaprint.r: remove extra sqrt roots in
	standard error of rates for conditional estimation (see revision 32)
	* src/Makefile.win, src/win32/Makefile: Changes to makefile for 64 bit
	windows
	* tests/parallel.R, tests/parallel.R.save: remove timers from
	tests to reduce differences with output.

2010-01-12 R-forge revision 39

	* tests/parallel.r: fix bug: use library RSiena not RSienaTest

2010-01-12 R-forge revision 38

	* man/RSiena-package.Rd, man/siena07.Rd, man/sienaFit.Rd,
	man/simstats0c.Rd: reduce time for examples
	* tests/parallel.R, tests/parallel.Rout.save: reduce tests

2010-01-02 R-forge revision 34

	* R/sienaprint.r: corrected layout of sienaFitThetaTable for
	models with both behavior and network variables

2010-01-01 R-forge revision 33

	* inst/doc: updated changes in manual
	* CHANGELOG: updated

2010-01-01 R-forge revision 32 (copy of relevant changes from revisions 29-31 to
	RSienaTest)

	* R/simstatsc.r: bug fixes to interactions (not yet functional)
	and name in header block

	* R/print07report.r: took square root of standard errors of rate
	estimates for conditional estimation.

2009-12-14 R-forge revision 28

	* R/simstatsc.r: fixed problem with multiple processors.

2009-11-20 R-forge revision 25 new version 1.0.8

	* R/simstatsc.r, R/siena01.r:  default method for estimation is
	conditional if there is only one dependent variable.
	* R/simstatsc.r: fixed bug if only one missing value: missing
	drop=FALSE.
	* R/simstatsc.r: fixed bug in naming of returned simulations
	* inst/sienascript: set to LF only eol style.
	* R/effects.r: uponly, downonly: remove	density effect and linear
	shape effect
	* R/sienaDataCreate.r: set the uponly, downonly flags correctly
	for behavior variables.
	* R/effects.r: corrected bug in creation of effects data
	frame for changing dyadic covariates.
	* R/effects.r: amend some matches for nodesets for bipartite nets
	* R/effects.r, R/printInitialDescription.r: remove structValid
	argument from getNetworkStartingVals as unused
	* R/effects.r: Named the rows and columns of matrix of changes in
	getNetworkStartingVals and getBipartiteStartingVals
	* R/phase3.r, R/sienaprint.r: added t-stat to print method for
	sienaFit objects, improved xtable method
	* R/print01Report.r: added warning about non-integer behavior
	variables
	* R/siena01.r: fixed a bug in deleting rows from table: format and
	object type were out of sync
	* R/sienaDataCreate.r: new methods for adding attributes to
	covariate objects
	* R/Sienatest.r: fix bug: change sign of one-sided tests
	* R/simstatsc.r: change to returndeps flag to avoid it in phase 2.
	* R/simstatsc.r: Create names for interaction effects in
	fixUpEffectNames
	* src/model/EpochSimulation.h,
	src/model/variables/BehaviorVariables.cpp,
	src/model/variables/NetworkVariable.h: removed outdated comments
	and unused variables.
	* R/siena01.r: fixed bug in editing all effects rather than a
	subset.
	* R/print01Report.r: added or corrected report of uponly and downonly
	processing.

2009-11-08 R-forge revision 24

	* DESCRIPTION, man/RSiena.RD: version Number 1.0.7

2009-11-08 R-forge revision 23

	* R/phase1.3, R/phase3.r: Created subroutine to calculate
	derivative matrix
	* R/effects.r: corrected possible bug in creation of effects data
	frame for multigroup projects.
	* R/effects.r: corrected bug in creation of effects data
	frame for changing covariates.
        * R/siena07.r: added effect numbers to the Estimation screen and
	rationalised the display routines.
        * R/sienaTest.r: altered function interface so can call the
	scoreTest function from outside siena07 context. Corrected a
	missing change of sign for onesided test values.
	* R/sienaPrint.r: print methods now return their argument
	invisibly
	* src/siena07.cpp: altered flag for return of simulated dependent
	variables.

2009-11-08 R-forge revision 22

	* R/siena01.r new option to edit effects split by dependent
	variable. Only partially functioning...

2009-11-08 R-forge revision 21

	* src/model/variables/BehaviorVariable.cpp,
	src/model/variables/BehaviorVariable.h: Uninitialised data in scores
	causing NaN's in derivative.

2009-11-05 R-forge revision 20

	* man/siena07.Rd: added detail to return value description
	* src/siena07.cpp: added functionalilty for user-specified
	interactions

2009-11-04 R-forge revision 19

	* R/phase1.r, R/phase2.r, R/phase3.r, R/simstatsc.r; corrected
	finDiff.method flag

2009-10-31 R-forge revision 18

	* src/model/tables/NetWorkCache.cpp, etc: New files added

2009-10-31 R-forge revision 17 many minor bug-fix changes also

	* DESCRIPTION, man/RSiena.RD: version Number 1.0.6
	* NAMESPACE, DESCRIPTION, R/sienaPrint.r : xtable method
	* R/phase1.r, R/phase2.r, R/phase3.r: stopped using ... in call to
	FRAN, which restored speed gain of multiple processors.
	* data/allEffects.R, data/alleffects.csv, R/effects.r: new R effects
	system
	* tests: directory added
	* R/sienaDataCreate.r, R/effects.r, R/printDataReport.r,
	R/simstatsc.r, R/sienaDataCreateFromSession.r, R/print01Report.r,
	R/printInitialDescription: bipartite nets
	* src/data, src/model, src/network, src/utils, src/siena07.cpp:
	new C++ effects system
	* src/model/statisticCalculator.cpp: structural zeros code
	corrected
	* src/model/EpochSimulation.cpp: revert to proper random number
	generator unless parallel running.

2009-10-31 R-forge revision 16 added eol-style properties to text files
