213d70585d950487b237a9d7ba316487 *DESCRIPTION
99376e9ed6bce711e36df9a6516a63b0 *NAMESPACE
b05ccdbc8c841f3000e18feffc6d7e53 *NEWS.md
261a5cb1c3f99fcf5258fc00581d1782 *R/DataApes.R
010b92b31a817997550d2fff8d6b18cb *R/DataCetaceans.R
cea3aeb7ef747aa571e2c309b99f95a5 *R/DataFelids.R
d182a526e84a62e41a886c4c89d43f5e *R/DataOrnithodirans.R
ea4b95f23b3f67a1db24a706cf470a15 *R/DataSimians.R
3c0e43736f7574e5966d51c1bfe8b381 *R/DataUng.R
ae1ea6cfe2f6d1305e9b483ecc71785a *R/PGLS_fossil.R
3552629a0fb2f4c62ccc841d6526ac8e *R/RRphylo-defunct.R
121cd5d4ce1e1082cc0373a651148039 *R/RRphylo-deprecated.R
f2ab4a0232d86d8773a7463233e14389 *R/RRphylo-package.R
867a5d7722e67916c294c7d556d83667 *R/RRphylo.R
5a1a2f263afa9691d7b5b3106363eaf3 *R/StableTraitsR.R
c3db1376e84193c1f5d77524f207ec58 *R/angle.matrix.R
c992365837ea4796e34b11379263441c *R/auxilliary.functions.R
3f78f1c32d87a99d43fa964d002235e1 *R/colorbar.R
8472fb86a15e68ca23abd6e0da1a7c5f *R/conv.map.R
6000edbee049ac72f284cbb094559b2c *R/cutPhylo.R
948e5ca0bc512d28e149f0d964b02585 *R/distNodes.R
94e54d9f615f4e11b2ebe37b4be167e0 *R/evo.dir.R
c5cebf676f1d8e4a6deda9c4758252e3 *R/fix.poly.R
d74c12760256d02fd5f50fc376769273 *R/geiger_functions.R
ea087f890b34d2c3f9a011e0dc4cc564 *R/getGenus.R
76a2531713a821f1df9167dc4fe8b0c5 *R/getMommy.R
92030b6409f01d18aee1b3f10ba75548 *R/getSis.R
c56ce93a9f5d2d1611c6d8bec249afca *R/lollipoPlot.R
46af091949640773097927ceeacb8722 *R/makeFossil.R
0bc3966138cda517b44bf28655eba140 *R/makeL.R
6ff1f5574e540674bc45a77047145656 *R/makeL1.R
e7e4aedc3c06784455620a084236d84d *R/move.lineage.R
2930afef5d436b0253313fbbb47b40d8 *R/namesCompare.R
c8ea04bc0ce5272b1510374ba1668a15 *R/node.paths.R
6225d378469ab6e103dfd47acfc5f06d *R/overfitRR.R
66dc12f6515ccebafc7f4fa8d5b5a568 *R/phyloclust.R
8670824005452cdfe129b0866c7a8b72 *R/plotConv.R
1a6bc63f3d3ff7014aaea4bf38b01ba2 *R/plotRR.R
09e9e2c894a79da8a238447a88f1d11c *R/plotRates.R
36f181213bc16d68a6c9509c98b44f32 *R/plotShift.R
f4cf8e692538f57501c134cc36d3d6f0 *R/plotTrend.R
8dc047722bd1d4bef4faaee739616b91 *R/random.evolvability.test.R
2aa362c32c5f982bdf5dadae7ef93b97 *R/rate.map.R
d3e7fa1377256ec02c159f851c19836d *R/rescaleRR.R
0c483efb976591820c987318d194ba8d *R/retrieve.angles.R
b1182103c7529ff60f3a247389d60f61 *R/scaleTree.R
029d78b4900ad10a8789423e128136e3 *R/search.conv.R
c9f32c95579ba063b6cc6e9fd4ec4b28 *R/search.shift.R
f428602ced881e6b97ff8a8799ad3454 *R/search.trend.R
0e13234268335238ded4858dc735bfc8 *R/setBM.R
c9e0bcca45270ac9e85b59a72dcdea2d *R/sizedsubtree.R
5878a41266ce0336c809ad65bba78c43 *R/swap.phylo.R
77e517b8ecf28eb96cbc3d25bf6db9b4 *R/swapONE.R
6748db6051a8ece2d49ae1fb26e6a31d *R/tree.merger.R
a218339b72090188f33d271b1d5799c2 *R/treeCompare.R
a87ca38420c20324db0e7c56f6860382 *README.md
608db86afb44fe30570ca5df4d7b5d9d *build/vignette.rds
3c3127f2d5d42c3912d57742f834a285 *data/DataApes.rda
8f95ad61fa098a0312f427dfd081a94d *data/DataCetaceans.rda
fca9800a2683faa2384620e5c1d69467 *data/DataFelids.rda
ca1f8209c9fbef21c62244b04b7dfea2 *data/DataOrnithodirans.rda
07f781c6d41cbfe4cc6d7733bc4474c2 *data/DataSimians.rda
5944cb20f016659dfacf56bc485c6c27 *data/DataUng.rda
a57fcd44c5ba4134cfd711c96970adce *inst/CITATION
c577d24396169a8a4c160d8149d137cc *inst/doc/Plotting-tools.Rmd
ea51501f844a690ff42712d765953907 *inst/doc/Plotting-tools.html
d73d0184432be80b0b7ec7cdcaa68e23 *inst/doc/RRphylo.Rmd
3f25a626f9304a3f63a2fcb556acefc4 *inst/doc/RRphylo.html
638db061178f0e78bf8395cb06402077 *inst/doc/Tree-Manipulation.Rmd
34d9ae2b80b1cb745d31b4a4418eabbc *inst/doc/Tree-Manipulation.html
56063d4aad12af640e4f60512050e0bb *inst/doc/overfitRR.Rmd
a6780cfb6a1f9d71a2d61790a293fbdf *inst/doc/overfitRR.html
69731f3582b983fd5dbe0339175e65a5 *inst/doc/search.conv.Rmd
9237577b31dd11bbd656928850c6a033 *inst/doc/search.conv.html
ee72f3a4ebd15e03a48d2068645507ae *inst/doc/search.shift.Rmd
176343dfd2a796cfe4268f09e056da0a *inst/doc/search.shift.html
a8e7c50319305c4ad33300ebb3604a45 *inst/doc/search.trend.Rmd
3cbd8568c5c3f423ca1ad667d5b590d0 *inst/doc/search.trend.html
90f35e6b7bcfeaafd68ef0dc8e155b3f *inst/doc/swapONE.Rmd
32669a1f9f4fda384c35628744d92e4c *inst/doc/swapONE.html
c88b64825e4667ac1419b9830243dff4 *man/DataApes.Rd
a87ef063eb0871a873f0f52cacbbf1ac *man/DataCetaceans.Rd
29d4ee6aa7e09070f454011c7cf06e7a *man/DataFelids.Rd
ea24b45d1b6fc80b4d069752a672f554 *man/DataOrnithodirans.Rd
49ce432c9d8b50e54e427210322c90ef *man/DataSimians.Rd
1b4dfc4f2ddcd0a82879c145c20c96be *man/DataUng.Rd
17a17c4ba8c93fb39c48ed7ee4207e9c *man/PGLS_fossil.Rd
03f617879a4a3f20f27b78d0089bba00 *man/RRphylo-defunct.Rd
2e930bfd83bdad88f48e7e251dd59653 *man/RRphylo-deprecated.Rd
5e52ae567675f77404a23edeabfd88a8 *man/RRphylo-package.Rd
caeb2d83379559bbdefe7b2d48ade628 *man/RRphylo.Rd
63cb744d0a73916a45270fe1955313b7 *man/StableTraitsR.Rd
91e3bce312a8d7d227588b89980da1f1 *man/angle.matrix.Rd
c5a21e86fdf452d2c646c400598f1401 *man/colorbar.Rd
e6d02969a637de26c28daf463650984f *man/conv.map.Rd
4bd4946d99070c4130ec29716eb15b25 *man/cutPhylo.Rd
26fd1fb25a6dce812fc721bb2d9febbc *man/distNodes.Rd
274521460d24b232cb7a7c0ad9e993d0 *man/evo.dir.Rd
02eef488c23d1668845340dc8d7222af *man/fix.poly.Rd
39cddfa89454377793bc409f1648d6b8 *man/getGenus.Rd
56a5491b3bd607116fd04cc451c9c602 *man/getMommy.Rd
e9f953768a2b3b54b6bf79dd278e23a0 *man/getSis.Rd
87d7ac2c0ae6cf557767a728a7a6566a *man/lollipoPlot.Rd
b545b719cc9d1909bafbad50d4fd84a0 *man/makeFossil.Rd
3a01376918fb792d4e3e3e2602aa2398 *man/makeL.Rd
a53c8f643b7075dec409eed15a537dbb *man/makeL1.Rd
36ed39d93f53a242fd3b308d0df0e87c *man/move.lineage.Rd
a9ce94b4ad5dcf680c69d1eea5bee2ac *man/namesCompare.Rd
17fa13e9dcf8e6bbbdae92435eac6a5a *man/node.paths.Rd
98a56381eb6ed356ff53628ec98152e0 *man/overfitRR.Rd
0a74d2592739de7e025daf67782ecbba *man/phyloclust.Rd
7cba1724d6b947bb6d6e81959528ba6a *man/plotConv.Rd
d89e7f295da8594b0138b0e29fcf3650 *man/plotRR.Rd
94fed7acf34c03edd842503143b69dbc *man/plotRates.Rd
2b44a1bf228fe018b8e21963461d5c2f *man/plotShift.Rd
a20ff256906c596f50b5b1f8cbbb96bd *man/plotTrend.Rd
dd5341ba75f910d7068e87996e127b2c *man/random.evolvability.test.Rd
382d741e73bf764b778abc4ada8db51d *man/rate.map.Rd
20ce97df9cbe15fa54906de2b1e75a21 *man/rescaleRR.Rd
51cfa724051f2087ddc6228837426b62 *man/retrieve.angles.Rd
34e009e97049bc88075f58ea9d60717f *man/scaleTree.Rd
c8fe3fdd971cc6bfd51e0393410b96a1 *man/search.conv.Rd
660c906bbf8202b45d2d25a8117be4e7 *man/search.shift.Rd
bac8da9ad7b751b4368d56718a82c2e6 *man/search.trend.Rd
0c9fffdfc12e847a281c34c895751649 *man/setBM.Rd
daf7b2a97f9ed47db34f20eb77d4438f *man/sig2BM.Rd
e9144e3863a3896f056590ea63d5504b *man/sizedsubtree.Rd
d170a1cd78e8fd69f1e086deffd195c1 *man/swapONE.Rd
b2bdcedceded41d9c7898d311dce5ff4 *man/tips.Rd
1b6776a7d1f01924238d0d15945c9b01 *man/tree.merger.Rd
29dfe69348b6dbde5c6b85e2329540da *man/treeCompare.Rd
befd8df194bdab8e25903a7c9438f13f *man/treedataMatch.Rd
c577d24396169a8a4c160d8149d137cc *vignettes/Plotting-tools.Rmd
d73d0184432be80b0b7ec7cdcaa68e23 *vignettes/RRphylo.Rmd
638db061178f0e78bf8395cb06402077 *vignettes/Tree-Manipulation.Rmd
56063d4aad12af640e4f60512050e0bb *vignettes/overfitRR.Rmd
ca1847c19246de8fd746f4cc26197253 *vignettes/plotting-data.Rda
68d170da42d6f1c1f33d7a60eda02ad3 *vignettes/sc-data.Rda
69731f3582b983fd5dbe0339175e65a5 *vignettes/search.conv.Rmd
ee72f3a4ebd15e03a48d2068645507ae *vignettes/search.shift.Rmd
a8e7c50319305c4ad33300ebb3604a45 *vignettes/search.trend.Rmd
1988c29ffd2dbd78c8f8e55415c2add9 *vignettes/st-data.Rda
90f35e6b7bcfeaafd68ef0dc8e155b3f *vignettes/swapONE.Rmd
