8d6e6fbb00d820e82770bc275be7f89c *DESCRIPTION
45fc68bbafaa38d66ced03cb90a0f3d5 *NAMESPACE
261a5cb1c3f99fcf5258fc00581d1782 *R/DataApes.R
010b92b31a817997550d2fff8d6b18cb *R/DataCetaceans.R
cea3aeb7ef747aa571e2c309b99f95a5 *R/DataFelids.R
d182a526e84a62e41a886c4c89d43f5e *R/DataOrnithodirans.R
ea4b95f23b3f67a1db24a706cf470a15 *R/DataSimians.R
3c0e43736f7574e5966d51c1bfe8b381 *R/DataUng.R
67fb8a77747a926537f2040d65879ca8 *R/PGLS_fossil.R
10ab0016e7a99bf04e7f49a3c9bbe793 *R/RRphylo-deprecated.R
f2ab4a0232d86d8773a7463233e14389 *R/RRphylo-package.R
8eb4f2ffa9e6a4954954992e682ee602 *R/RRphylo.R
1c3da0c8c3f49aea219ad5e955ac1324 *R/StableTraitsR.R
a9bd6c59148dcdc5f3f623972e1952c7 *R/angle.matrix.R
b8e10c92274b365d63e565682b96d173 *R/auxilliary.functions.R
8472fb86a15e68ca23abd6e0da1a7c5f *R/conv.map.R
c4da4e6da5ad1cf7b81a38c18cfc2ae4 *R/cutPhylo.R
34f78eb0b46aae386872b5f938eaf656 *R/distNodes.R
066a8432fa298f90b78d201870bef21f *R/evo.dir.R
c5cebf676f1d8e4a6deda9c4758252e3 *R/fix.poly.R
8aa1cb031b8fdc0f7babcc40d6d96933 *R/geiger_functions.R
ea087f890b34d2c3f9a011e0dc4cc564 *R/getGenus.R
76a2531713a821f1df9167dc4fe8b0c5 *R/getMommy.R
5c46f168e359fcf5d8ee8e9d1fc8a36b *R/getSis.R
46af091949640773097927ceeacb8722 *R/makeFossil.R
0bc3966138cda517b44bf28655eba140 *R/makeL.R
6ff1f5574e540674bc45a77047145656 *R/makeL1.R
e71dabaa58444e02c8b4c5661c40020b *R/node.paths.R
11dec89de8b8c284c41101fa17f7b778 *R/overfitRR.R
66dc12f6515ccebafc7f4fa8d5b5a568 *R/phyloclust.R
35b6cf61b63403a1e138224c1aeb0cd4 *R/plotRates.R
d0a63f33782dada10f2acdf706c89e50 *R/plotTrend.R
e41379091882b4f1ab710cb0bb81a3fb *R/random.evolvability.test.R
9394754db1c0f00e6d5e1522bca3a2da *R/rate.map.R
987b7daf132f4d6d419e9c03da0b04fe *R/rescaleRR.R
0c483efb976591820c987318d194ba8d *R/retrieve.angles.R
0c217b4c5e73542d76de883aa1b8dbad *R/scaleTree.R
de5570a7f7366f0c4c77e76326aabfb0 *R/search.conv.R
e09ae63eaad3d0ad605673bf7a78464c *R/search.shift.R
30b21e3e516169fac6c33983deed98b1 *R/search.trend.R
0e13234268335238ded4858dc735bfc8 *R/setBM.R
d76bfcdb7d3f8224226032dbc634b915 *R/sizedsubtree.R
d97822966de73b93196d5db5b22717ed *R/swap.phylo.R
2b2aac88bf25de82b85012ab0f658710 *R/swapONE.R
db361979d2bc7314e719688467b5f803 *R/tree.merger.R
a87ca38420c20324db0e7c56f6860382 *README.md
8d78c130b1880162a2c7586d3e833bba *build/vignette.rds
3c3127f2d5d42c3912d57742f834a285 *data/DataApes.rda
8f95ad61fa098a0312f427dfd081a94d *data/DataCetaceans.rda
fca9800a2683faa2384620e5c1d69467 *data/DataFelids.rda
ca1f8209c9fbef21c62244b04b7dfea2 *data/DataOrnithodirans.rda
07f781c6d41cbfe4cc6d7733bc4474c2 *data/DataSimians.rda
5944cb20f016659dfacf56bc485c6c27 *data/DataUng.rda
2b4408ef52b07d489429b687817c8d7e *inst/CITATION
ecbd1cfbf365062b4b9ead6a7cf11f08 *inst/doc/RRphylo.R
c71ad1b80fea69371c483f432c1ad770 *inst/doc/RRphylo.Rmd
9fb0fc8ddf6e570584df1993e58e0285 *inst/doc/RRphylo.html
6946c70873662be36d3de1ea88bae880 *inst/doc/Tree-Manipulation.R
ee8749914d49bd833d0ba308d1742ff4 *inst/doc/Tree-Manipulation.Rmd
d44279b490328a9476a606634ed9225c *inst/doc/Tree-Manipulation.html
99dc3ab8d4e8890f94ed170a0086b013 *inst/doc/overfitRR.R
5709782bb53e8af585c2958ac4383e9c *inst/doc/overfitRR.Rmd
fa188e013c00ffc1075fd99f8a46406a *inst/doc/overfitRR.html
6ad982dd725c193fc48b294df482bebe *inst/doc/search.conv.R
2784b8ea8f28871833a1cc6a571f2155 *inst/doc/search.conv.Rmd
ec48a9f76032190baaa15fa5bc00c2a7 *inst/doc/search.conv.html
9c62e6f703e9ba7867bf4710dd2c37db *inst/doc/search.shift.R
9fe74cd037ce15e4184668a1e2ea5cd0 *inst/doc/search.shift.Rmd
990ca8bbea12c2bac5e64cea3b53ee2d *inst/doc/search.shift.html
5bfa97bd0da7c5b4ee0096c55cf5b9a7 *inst/doc/search.trend.R
ec45e06cc84c05d0794dfffe57443baf *inst/doc/search.trend.Rmd
cb5362d7c5d0cb8c712624949acbe3e3 *inst/doc/search.trend.html
8eeb41f1b7f657c1e1b985fbe571a065 *inst/doc/swapONE.R
bc3fda526d796546eeb55d3876d40251 *inst/doc/swapONE.Rmd
7eb665adc6144d2d2c1f9a26445d336e *inst/doc/swapONE.html
cf85045a804de3a4a47e510e331887d1 *man/DataApes.Rd
8a33c48eda456d4fb64cd196831aee46 *man/DataCetaceans.Rd
de67ca56336b6f560839fc0d29526667 *man/DataFelids.Rd
f592999474d4737c21f59575ac556652 *man/DataOrnithodirans.Rd
a847da11baa26e542ebbc453389dc0c5 *man/DataSimians.Rd
427d06e83f321e383d0769484de0b08d *man/DataUng.Rd
48987ec6097a2d14366b566cc969dc1c *man/PGLS_fossil.Rd
457bc5c460bdbf1fd97cdf66dc81d55b *man/RRphylo-deprecated.Rd
8cf785ac2c9bf9b8a60648de1bd6ade7 *man/RRphylo-package.Rd
ba1515554721bd2c7ab777171f088ad8 *man/RRphylo.Rd
49bad362f5c536eaa1deff9a14383650 *man/StableTraitsR.Rd
b20f26a1bba2858e9de4d41f0b62b610 *man/angle.matrix.Rd
aa092b9b0c6af34c775419d11cdad596 *man/conv.map.Rd
3020eca694278e01db7336fe3bce2623 *man/cutPhylo.Rd
bc18f45c9d57c19cb6a5b02a3517c00c *man/distNodes.Rd
a8020baf596868d2ba052076aab27967 *man/evo.dir.Rd
37444eeee82979c338b0ca1426dcb127 *man/fix.poly.Rd
9ca5465eec8d533851b84bd6a9c00118 *man/getGenus.Rd
0325923641b041c9f46d03921f403816 *man/getMommy.Rd
87899a18538b1d7934f815cec9ac60e9 *man/getSis.Rd
aae4e8bf77e5564046bdbf0a533f96b1 *man/makeFossil.Rd
81913e50f1d7c91185b865fcd568692d *man/makeL.Rd
6a4c51d45eaeafa62532e307d6fde604 *man/makeL1.Rd
ad5478da4ef06a25e497601bb1e01724 *man/node.paths.Rd
1fc59b43e1de976b72150af0b8f2b936 *man/overfitRR.Rd
498bb61484e16213807837e834669e9c *man/phyloclust.Rd
ad35c6029582c63bf6aa9e27b819a6dd *man/plotRates.Rd
1ec0f30452a03af4587f3a09cf4d2c3a *man/plotTrend.Rd
56d71cc4fc75670a896facd9f398a7ad *man/random.evolvability.test.Rd
95eb749cd20482a7bf7bea0caee53d80 *man/rate.map.Rd
00b64b3ed58038ab61a3a3cffda5e32e *man/rescaleRR.Rd
3e82e176936cf8da68a1bcae9cb70ecd *man/retrieve.angles.Rd
ff007da697fa95196b017e626e1f85ac *man/scaleTree.Rd
86a8da054632bbc10854b214ff05d932 *man/search.conv.Rd
a46854dd812292c08230fdc90ff8febc *man/search.shift.Rd
88b7ac2b21c88d4cc059d5ca67f3e7fa *man/search.trend.Rd
67a7a6a3b82f3925225ae856c98a7f9f *man/setBM.Rd
737548319aa720170216af41bab7d377 *man/sig2BM.Rd
031b461db3c0b2ef60df70493f756434 *man/sizedsubtree.Rd
769ae1945ac9614d74b7a6a4e1f20943 *man/swapONE.Rd
3bf180593c8c003ae40a08848e378450 *man/tips.Rd
e88b6b440262b23143e5d0de6c587c9f *man/tree.merger.Rd
e94ca5fa189c621ffa8c1047169942e0 *man/treedataMatch.Rd
c71ad1b80fea69371c483f432c1ad770 *vignettes/RRphylo.Rmd
ee8749914d49bd833d0ba308d1742ff4 *vignettes/Tree-Manipulation.Rmd
5709782bb53e8af585c2958ac4383e9c *vignettes/overfitRR.Rmd
2784b8ea8f28871833a1cc6a571f2155 *vignettes/search.conv.Rmd
9fe74cd037ce15e4184668a1e2ea5cd0 *vignettes/search.shift.Rmd
ec45e06cc84c05d0794dfffe57443baf *vignettes/search.trend.Rmd
bc3fda526d796546eeb55d3876d40251 *vignettes/swapONE.Rmd
