10c792b8e1dd0d8c2f5c3017ffdf5a84 *DESCRIPTION
9923546156d898c6e80fa11ac69e6c7b *NAMESPACE
261a5cb1c3f99fcf5258fc00581d1782 *R/DataApes.R
010b92b31a817997550d2fff8d6b18cb *R/DataCetaceans.R
cea3aeb7ef747aa571e2c309b99f95a5 *R/DataFelids.R
d182a526e84a62e41a886c4c89d43f5e *R/DataOrnithodirans.R
ea4b95f23b3f67a1db24a706cf470a15 *R/DataSimians.R
3c0e43736f7574e5966d51c1bfe8b381 *R/DataUng.R
407475a327e579a92ef3899216c8eeed *R/PGLS_fossil.R
30afe01ee4882a6e88578bbb05fccd11 *R/RRphylo-package.R
c9dd3a23085e0805c57c3bf1c319c729 *R/RRphylo.R
c9b245023564ef9f470b35e7b1c89a7e *R/StableTraitsR.R
6fc336cd3b41c6b44fdb7b7b405c4c5a *R/angle.matrix.R
25ce750b76e9940ff670ed4f6eee6332 *R/auxilliary.functions.R
c0d0f52ef6b87545108fa99c53b02aa1 *R/conv.map.R
39806816ddb6bcc49041857ddd145715 *R/cutPhylo.R
90cd489ff8e0cfd601945889d1368b90 *R/distNodes.R
74dd0c5aa70022458e77b88a87ed492d *R/evo.dir.R
7cfdcfdcf4210b2a2e4ac2a677ae32ef *R/fix.poly.R
4c8a206020d7e583749b08ef949d1465 *R/getMommy.R
a6c0fd31bf8693346b357664c3737da3 *R/getSis.R
35fc32919ff39c89255d1d443e5571d0 *R/makeFossil.R
bda7249115ad6396415da5a18f1d4f7d *R/makeL.R
535b45e17e6c692fcfb472faca2505a8 *R/makeL1.R
e7fdf8b0384bfacb8d87e705b48dd721 *R/overfitRR.R
ebe69f43459fcae5efd2f4e833d380fa *R/phyloclust.R
dd63d62aa1d03d8c8d48c8ee487855c2 *R/plotRates.R
acdb88ed6a97ee2c16b50bfb9f4bf28d *R/random.evolvability.test.R
77d92728eae943cbae5ed67bb01a7910 *R/rate.map.R
0c483efb976591820c987318d194ba8d *R/retrieve.angles.R
0b11e5c6af9d93f93d98d9b4e5b80fc9 *R/scaleTree.R
e3a255c2e43f69cfeb9322e033b1b4e1 *R/search.conv.R
8ab85716d8176b4d9207a38b6802d13c *R/search.shift.R
484da6dc72bdc7ce6b1e43d76a15bf96 *R/search.trend.R
5e14ce6196d4ee8be0d743360b369fb1 *R/setBM.R
0f79e67d5524cb7423a273efcd39740e *R/sizedsubtree.R
3b16f51e25535641a1120da127ab1b80 *R/swap.phylo.R
21e004160bb5b3fa4e2285ec477f7e13 *R/swapONE.R
3c1fb16d5146e77f7210d51a2a2407cc *R/tree.merger.R
a87ca38420c20324db0e7c56f6860382 *README.md
b7fed934645698f3e9be01f5e56a6fc2 *build/vignette.rds
3c3127f2d5d42c3912d57742f834a285 *data/DataApes.rda
8f95ad61fa098a0312f427dfd081a94d *data/DataCetaceans.rda
fca9800a2683faa2384620e5c1d69467 *data/DataFelids.rda
ca1f8209c9fbef21c62244b04b7dfea2 *data/DataOrnithodirans.rda
07f781c6d41cbfe4cc6d7733bc4474c2 *data/DataSimians.rda
5944cb20f016659dfacf56bc485c6c27 *data/DataUng.rda
b0460f43dddfc9e872c96d150c80c807 *inst/CITATION
ef3c21954bbf699cc7d40b50ecd5f4c4 *inst/doc/RRphylo.R
524b7296957ad6a82e5eb48934837e3f *inst/doc/RRphylo.Rmd
7b86d6b7ec5dd91ce73f3ecf7acddda1 *inst/doc/RRphylo.html
53278451f732dbb2efcbd717e9d7abe7 *inst/doc/Tree-Manipulation.R
eb6b9db852543a1b91ec7e9aac4e592a *inst/doc/Tree-Manipulation.Rmd
4866cd8f07d2e4bb3b32ddaefb956865 *inst/doc/Tree-Manipulation.html
b312eb013dd82584d7825d0b5edb6a15 *inst/doc/overfitRR.R
30051cd7cf6ed32573aaad85ee699537 *inst/doc/overfitRR.Rmd
fa188e013c00ffc1075fd99f8a46406a *inst/doc/overfitRR.html
53263b8ead81dca8dfc73a380f89afdb *inst/doc/search.conv.R
525f422dce20a63d3c7a4a7668e8bd8b *inst/doc/search.conv.Rmd
dd147a9cda562bb7a90c76060812e1de *inst/doc/search.conv.html
66fdd414c21a900e833982ee8f3cbad5 *inst/doc/search.shift.R
74642b3ac326bcf993d8ac019b7b6483 *inst/doc/search.shift.Rmd
ba141e9530160db836a19edf9cb897df *inst/doc/search.shift.html
a3c45beae785808a852704e574729182 *inst/doc/search.trend.R
730d0c4acc022a3d734726c8dfb804db *inst/doc/search.trend.Rmd
ce6847c3cc4fcfc614665be7a979575b *inst/doc/search.trend.html
034e3a1975dbf9b9f4532daa510201d6 *inst/doc/swapONE.R
30bbc64164062a4c0fa480fbfab9045b *inst/doc/swapONE.Rmd
6cd60be503ef052b01154fa440d31b35 *inst/doc/swapONE.html
cf85045a804de3a4a47e510e331887d1 *man/DataApes.Rd
8a33c48eda456d4fb64cd196831aee46 *man/DataCetaceans.Rd
de67ca56336b6f560839fc0d29526667 *man/DataFelids.Rd
f592999474d4737c21f59575ac556652 *man/DataOrnithodirans.Rd
a847da11baa26e542ebbc453389dc0c5 *man/DataSimians.Rd
427d06e83f321e383d0769484de0b08d *man/DataUng.Rd
48987ec6097a2d14366b566cc969dc1c *man/PGLS_fossil.Rd
4935dfa6a70581b37681134f2647bb21 *man/RRphylo-package.Rd
b84a561d2329a7a8348446aeb9265bc4 *man/RRphylo.Rd
49bad362f5c536eaa1deff9a14383650 *man/StableTraitsR.Rd
b20f26a1bba2858e9de4d41f0b62b610 *man/angle.matrix.Rd
d53573c48c42999801eff4343e9ddb9a *man/conv.map.Rd
6a7f9c93030149f131ddf909094cea4b *man/cutPhylo.Rd
bc18f45c9d57c19cb6a5b02a3517c00c *man/distNodes.Rd
a8020baf596868d2ba052076aab27967 *man/evo.dir.Rd
efd989f02dc8c202035377847565670e *man/fix.poly.Rd
ba98737d1850c34e86ff12c28ffcdc35 *man/getMommy.Rd
87899a18538b1d7934f815cec9ac60e9 *man/getSis.Rd
aae4e8bf77e5564046bdbf0a533f96b1 *man/makeFossil.Rd
81913e50f1d7c91185b865fcd568692d *man/makeL.Rd
6a4c51d45eaeafa62532e307d6fde604 *man/makeL1.Rd
77d76c3aa97cc5f384d786153f6e7e34 *man/overfitRR.Rd
498bb61484e16213807837e834669e9c *man/phyloclust.Rd
25c9cb95907c332dc1e4dd2e440c554c *man/plotRates.Rd
e64128fe5cfd9e6bc9ce2d64febd67f4 *man/random.evolvability.test.Rd
b38c31eb013fdcfc6fc19a69fdc5366c *man/rate.map.Rd
3e82e176936cf8da68a1bcae9cb70ecd *man/retrieve.angles.Rd
21a9a3e9f06df0e1a308a93b88a4a00c *man/scaleTree.Rd
bd6a74299b646d3bc2ea786d5628bf31 *man/search.conv.Rd
3a85994df6a9e9c9fff8c6826952d64f *man/search.shift.Rd
b7b6947cc4ce1b97a2040bf5af0f2b68 *man/search.trend.Rd
67a7a6a3b82f3925225ae856c98a7f9f *man/setBM.Rd
031b461db3c0b2ef60df70493f756434 *man/sizedsubtree.Rd
071f3569470da51f7c9065f7e630656b *man/swap.phylo.Rd
5f16543cffe1ee30e24bb4bd80e854a1 *man/swapONE.Rd
8ff95f708d6add52395f6740c45380de *man/tree.merger.Rd
524b7296957ad6a82e5eb48934837e3f *vignettes/RRphylo.Rmd
eb6b9db852543a1b91ec7e9aac4e592a *vignettes/Tree-Manipulation.Rmd
30051cd7cf6ed32573aaad85ee699537 *vignettes/overfitRR.Rmd
525f422dce20a63d3c7a4a7668e8bd8b *vignettes/search.conv.Rmd
74642b3ac326bcf993d8ac019b7b6483 *vignettes/search.shift.Rmd
730d0c4acc022a3d734726c8dfb804db *vignettes/search.trend.Rmd
30bbc64164062a4c0fa480fbfab9045b *vignettes/swapONE.Rmd
