55baa18b66550c875483b7a419096e83 *DESCRIPTION
e9ab0aeb5ecf9065ee42821d489c6f44 *NAMESPACE
c5dab43e019bc1c59a4ffaed77bf3e24 *NEWS
34650799ad4640d4d8109653e30ea8e0 *R/PIMS.R
d688fd3c7d8ddc8d7d5c2258e094e8fe *R/RMark-package.R
beb839ea3bc7f4e18ec6770976a67e6d *R/TransitionMatrix.R
c20b94761c6680aa87e4a2a1e2afcfeb *R/add.design.data.R
210074379aa76d00a01ca1b5062b0ef9 *R/adjust.chat.R
783001fb14533151a0eb83a18e78f6d2 *R/adjust.parameter.count.R
4d1590d4ac56aa47f50f5b6e9c5e28d4 *R/cleanup.R
387ae9fd1e81c2fa6f6dc8698a214dc0 *R/collect.model.names.R
904f1c936a14c5c8eded2078d24ff8c2 *R/collect.models.R
59010404dc043e141c165a5f57be99b1 *R/compute.design.data.R
4f94cdb18c5562031bf7659ed8672901 *R/compute.link.R
043b8aedebbe32b883a7447b3a66f938 *R/compute.links.from.reals.R
e341aead46fb933b83acf87445fe90d5 *R/compute.real.R
9ab0bc0f20f7da01766cf05140342b52 *R/convert.inp.r
d45a5ea41708d22cd83464c9d4050052 *R/convert.link.to.real.r
1272a78a3ee6de4e506125ce4cd3cb6b *R/covariate.predictions.r
0a4b080de89f2164a864e13a0b15beca *R/create.mark.mcmc.R
9eaa75e47fb1b6cda5cd4451a2a8673a *R/create.model.list.R
e5a20a4731d84ae7e3b707045d957075 *R/deltamethod.r
edc62ba4f9ee716ba24b02971b9c8af1 *R/deriv.inverse.link.R
99bf4ed0555667c487f90fb7b4e169f1 *R/export.MARK.r
269a4e68471e229be062bdd8453818c7 *R/export.chdata.R
a956876eb9f3c3dde4066dcd3d643684 *R/export.model.r
8ca6f37e1bb29ffdce775bef4a9f086a *R/extract.mark.output.R
e73c0fd541093dda9ebf6f7bdab6f3c3 *R/fill.covariates.R
2d5f2dc25736ea38594d1bef72cf70c9 *R/find.covariates.R
0f7bae0069500d3863c46d327006bfaf *R/get.link.R
b204b5d1f2f7d09f8abd55750df3ea47 *R/get.real.R
1d2e2c936b9587cc8e5d4338b20b337c *R/import.chdata.R
4a2e7e00937651d36d87c6eb4e77324f *R/inverse.link.R
6bd429a2eae83969c91cd81925a151f1 *R/make.design.data.R
c47f65fc31345e0145e3a3f89aebf5c1 *R/make.mark.model.R
2baec4f3f6d65945e7de0f1c2bdd9791 *R/make.time.factor.r
8ac451a77cb8b9498dfbaa87d5573c72 *R/mark.R
f9f73f4984086abd6dc3f6bd987f604c *R/mark.wrapper.R
129f5cd0e4c3c4fa05de1867c596207f *R/mark.wrapper.parallel.r
45d55d3152d281cbe2bb2c837c64e683 *R/mata.wald.r
344a4ab87f5d37f762ae61312b18d122 *R/merge.design.covariates.r
86dd20b30acabee5ac497dc594a1c1b0 *R/merge.mark.r
093e7076cd9e5a6b2c7fe0a5ec189e5d *R/model.average.R
fe5c5c40909763fe56023a95b3ae388d *R/model.average.default.r
f92cbc2f1e9175ddc4155351fc0f94fa *R/model.average.list.r
0b2cd6cba8b4ecfe756f6cc2f1a67a56 *R/model.average.marklist.R
e0fba0f24b2c4d26f2853ed936354c8d *R/model.table.R
38108cc2f7823956cfe2fd45507206a1 *R/popan.r
d75280bf29a3b8725d54b382e7d25ee2 *R/print.mark.R
ccdb637a82339c4d2596361d767d7299 *R/print.summary.mark.R
2417e1e743843992f7d4e45ac4bac5b8 *R/process.data.R
ea1df4e7a8f6775bb0c87a0c61048295 *R/read.mark.binary.R
b5e0b78ea07083229d00e8fafee5b654 *R/read.mark.binary.linux.R
c6e99fe403726376927792a8590e1caf *R/release.gof.R
2da676c4d0ccde10238dc56b6bedfc0b *R/remove.mark.r
b97fd833a1cbb3b2e252de8d1afc928e *R/rerun.mark.R
7113b57fe95cdb39e23398bca1bf0992 *R/run.mark.model.R
f8da6510256c61202af1daaddc9f712b *R/run.models.R
437d2a7601cee36443bd6c4fec47ad10 *R/setup.model.R
a37618b605d8a1ffb90bf8580ced9a93 *R/setup.parameters.R
ecc5d3bf7081b677e43746d0ecd470f4 *R/splitCH.r
6330f4e954171baad9941d6ed22d61fa *R/store.r
de9f7474470dafe5882bb28a60717df6 *R/summary.ch.r
8569b01ebc97c1976407d6cdd392ef6d *R/summary.mark.R
948820592997f199b8317812f99b3a50 *R/utility.r
40922e79da118df4cd6920e5bc47b5e5 *R/valid.parameters.R
1564a52c7ef33590fef21902777fc94c *R/var.components.R
d97b01de06be982a5d914cbdb0702699 *R/var.components.reml.r
9965bb457a22f13e009de3e35fa37469 *R/zzz.R
1d5f13d84d841089658f4bf80479f49f *data/Blackduck.rda
ad32c1fdee1b8df97e98872d97e410cd *data/Donovan.7.rda
e8bf201d53609791b005ac9a779a006f *data/Donovan.8.rda
458c2a812e5480b5771ab39b324eb14a *data/IELogitNormalMR.rda
892b3fb1f9e95786bd86a8bdcd27027e *data/LASP.rda
9b0fa5db571ede2af47523bc82f44d87 *data/LogitNormalMR.rda
7fe8f719d12c121de6bfdf7098b9b164 *data/NicholsMSOccupancy.rda
6bca3bcded8863b8dc5bedab3bcbe8a0 *data/PoissonMR.rda
ff50f02d7891f32f28a0004fcfdf9cf9 *data/Poisson_twoMR.rda
cfb8a5c7aac8d35abac00b8d323b7740 *data/RDOccupancy.rda
865dc970db1f84244a54f56eb71101f3 *data/RDSalamander.rda
fd721dd1ad36488cbdf6083db169412f *data/brownie.rda
9b53be6d5d943985fdc474e244497b47 *data/crdms.rda
84b837b6b9a246b46f14112daaa73b7f *data/deer.rda
86fa75dacd73a1e0c85a547b19b08f0c *data/dipper.rda
d4a9e7a932ce5e87209f938d1682136c *data/edwards.eberhardt.rda
4954f907dc0c6c75327960a898ad5d7f *data/example.data.rda
fd8de7cdb2f3704b8d5dff69fe3d7325 *data/killdeer.rda
eec28a6672ee77abe66c0cc2d2bb5034 *data/mallard.rda
7eaf404871d785bdd7c88b24341c8c69 *data/mstrata.rda
4b0f4d2db407178766f0f540563e607a *data/robust.rda
a9813ff6695570fedf31962394c41d19 *data/salamander.rda
00d324b835bc347ced8cc8ce396e3097 *data/weta.rda
4f99b5d38dc8f432c631abb7c59a4ce7 *data/wwdo.09.rda
1c532e375c3b423112057172517c4302 *data/wwdo.10.rda
f3d2daecfbbe099cdaecac7241b7e888 *inst/CITATION
2a16e3bc87e388cacb31dc448adbee87 *inst/DerivedPar.txt
724ab3d3a96a8602da3b4f39cc3bef8a *inst/MarkModels.pdf
e8aad2524968b4c97f188bb6c8f27b68 *inst/README.txt
49ea636ed064df6d403fa51b585f868e *inst/extdata/aa.inp
b696b42cb06ce7a0de608eb978e1824b *inst/extdata/adult.inp
45d08cd799804834449507db82e5bbcd *inst/extdata/age-transients-full.inp
a79c5989f3b66c3865552c92e5dc82f3 *inst/extdata/age.inp
dfc804f97dec97f755df87ba57440e9f *inst/extdata/age_ya.inp
d07f264c3e64e2726533c9335f9b62b9 *inst/extdata/blackduck.txt
f6b1f65b58f0a12d8be17ad213f6d173 *inst/extdata/blckduck.inp
74b97a50d2282afb492d1d124d3faf51 *inst/extdata/brownadt.inp
36a6d1e8d59d3620e6bf4b62977d6de6 *inst/extdata/brownie.inp
9293e73480edcd3d006998af78f637c8 *inst/extdata/capsid.inp
c170fb82089bf3d87652a04d1aff9753 *inst/extdata/chase.inp
dfbbb3f90f541d117dfc307c43d18b5d *inst/extdata/cjs3grp.inp
fb92c59c981d52e9996f02d172a32df4 *inst/extdata/clogit_demo.inp
942a47d02d9a40b53fd725a0093d7c46 *inst/extdata/deer.inp
7f41f86fe9178f2127d52e1dd52f809d *inst/extdata/dipper.inp
959ebe116b5842bc36aad89741479def *inst/extdata/dipper.txt
ddc52aa126ce70815cf71f12a0f6adf0 *inst/extdata/donovan.7.inp
489c21c0ccae890d4278c6ac49c69197 *inst/extdata/donovan.8.inp
128e570be606ec5484643f1b308e52cb *inst/extdata/ed.inp
b7a243ca7d0b8dc6ee8e705772a6f5cd *inst/extdata/ed_males.inp
7bc349166ab76d6fc6b79269ab1408ab *inst/extdata/edwardsandeberhardt.inp
6042a2d31958f8a7319ab876538dcbd0 *inst/extdata/edwardsandeberhardt.txt
239b7fc03b9d6a4921871e83ec85102e *inst/extdata/effect_size.inp
9de4a819d0c3ec0fa57831d2d2bd3139 *inst/extdata/effect_size3.inp
3a7ef45fae6c0e086a2d77c56d619dcc *inst/extdata/example.data.txt
c34b4cddc49b1e62d833a04bb422fff6 *inst/extdata/f_age.inp
b2e066d275eb381c5f8e9790dca93d65 *inst/extdata/huggins.inp
f43ba679ef28128871b42427e03160b4 *inst/extdata/indcov1.inp
40246c9b16d6feb263fd3daebdca7f91 *inst/extdata/indcov2.inp
72798486641420a5b809e60f979bb8a6 *inst/extdata/interval.inp
b8aa386bc2ffe4d0ccd151f0d25eb683 *inst/extdata/island.inp
1860ca3834a3d1ee964d5c519153d739 *inst/extdata/killdeer.inp
44d3a5ecead2152e5a47d295aca3fe70 *inst/extdata/killdeer.txt
38823e8d27c8c70477ee080de8c04afb *inst/extdata/ld1.inp
c594eab39c0a7980e7cf8dce817a75a4 *inst/extdata/linear.inp
90968dd2ba4baf436f18ca55f0f05436 *inst/extdata/m_age.inp
c75c90b426d7d3008e42d8ae7ad0be86 *inst/extdata/mallard.txt
ecb13a6d1b6beebe56087c91ecbd3c2a *inst/extdata/mallardnestexample.inp
bd89501bfeec5171a8f18c8ae4c89422 *inst/extdata/mixed_closed1.inp
421f8c453cbddca684e9275513277cc0 *inst/extdata/ms_cjs.inp
4d76ce0b8d0703dc6ff9f6efee7213b0 *inst/extdata/ms_directional.inp
d4fb41eaeef0917ed3a751dd049fc9f2 *inst/extdata/ms_gof.inp
b2a04889c534c046a767ec839de94371 *inst/extdata/ms_rdsimple1.inp
df39695b5f71b928f15c9b65a17c78bf *inst/extdata/mssurv.inp
82106501288c55966dd1e3df479d4c1e *inst/extdata/mstrata.txt
b847e02cac5da0eef72917c59d8c52dd *inst/extdata/multi_group.inp
b78595a5af1a780aac863a380c07e378 *inst/extdata/nicholsmsoccupancy.inp
ab4f1fa54e4f4b76479c19f113a50523 *inst/extdata/pass3mstrata5.inp
c57fa98a46aa5debbe3e3cfd638ad1c6 *inst/extdata/plover_mark.inp
8e3443f8f9da6f51db1497991a416e67 *inst/extdata/rd_complex1.inp
5f3871bac8d7e6219e827a7b5b81bb18 *inst/extdata/rd_simple1.inp
4265333d06cf75618091e2e951cf0d59 *inst/extdata/rdsalamander.inp
bf3eef98a58a04b949264a2ccba0f935 *inst/extdata/recruit-ms.inp
81a70c4d6098b5b6cdcb31d3eef4f972 *inst/extdata/robust.inp
aae7b6c283ce47ee1e4a45400b5dd77e *inst/extdata/robust.txt
70149a809da484cd0a283494c8e16c22 *inst/extdata/salamander.inp
1b8f9f67482f3f1642ac6b6aec933636 *inst/extdata/simple_closed1.inp
13ef03c111f6f1a1fb71c4839716192e *inst/extdata/staggered.inp
0dca82f50fcce23e638c485c44ae611e *inst/extdata/transient.inp
0c0b6839316c3c7c95cd9842fedd7299 *inst/extdata/weta.txt
33949ebad462c615af738183960d0949 *inst/extdata/yngadt.inp
39ad8865679612ef956a44c67abf5c5c *inst/extdata/young.inp
e5c952e314cfb0bd34f0405e96a229a4 *inst/models.txt
d9e28bc56bdc2c4794f101c87e270549 *inst/parameters.txt
a3e256f707ba3220bbce6ec1307e96ff *man/ABeginnersGuide.Rd
28017eb70d03514bf86688334c5ddc80 *man/Blackduck.Rd
fd0eb66d7296b4ae67005daf72294c18 *man/Donovan.7.Rd
9841ea02dc88ce38bbc411905c2e79f5 *man/Donovan.8.Rd
82da348a52236e87082b7e7cb65c71e0 *man/IELogitNormalMR.Rd
7c5eca905e4437f181f0dcbbd5b3c37c *man/LogitNormalMR.Rd
f6c338ea88664955b989ea0ff01a9ef0 *man/MS_popan.Rd
ba348bf29d072b3266f1e18cd832a86d *man/NicholsMSOccupancy.Rd
db96c3962929217e60da07bc0b1668f8 *man/PIMS.Rd
e13b4bf36b763566c62a928ca1ca9d08 *man/PoissonMR.Rd
aea7958c6e6ac3a800bda716ccebc2a0 *man/Poisson_twoMR.Rd
8c53012c3a9d7def92db2351012d0157 *man/RDOccupancy.Rd
211ab7c5eb080bd38c9c9e49334dc177 *man/RDSalamander.Rd
65af7f8fc57c14dfa2f44768fe08de66 *man/TransitionMatrix.Rd
120f465f9f9e52cd9b3a824e6a1974e3 *man/Whatsnew.Rd
c6b8cc096b66222e06bc519c0907246c *man/add.design.data.Rd
055172b953dfcc0d106f2345fc04be5a *man/adjust.parameter.count.Rd
cc7404c9a47838609323d40322c5cbd2 *man/adjust.value.Rd
defffde366619cc1b53fc266cd73a175 *man/brownie.Rd
76443e3557e8d7e5b939efa829e04ad7 *man/cleanup.Rd
bec650a5b2b5e232b3f44b9846320628 *man/coef.mark.Rd
ff498d67ed1656a76275b8de00d25750 *man/collect.model.names.Rd
0a64046109c39395f470e73f74565cd0 *man/collect.models.Rd
e0d8d61ac83bb4f453b5941b15097dac *man/compute.design.data.Rd
14b7954fe4cbdd204bb05febcb915c16 *man/compute.link.Rd
cd80dcbee5655a97b5a243798a8cc56c *man/compute.links.from.reals.Rd
bd028e54ddcf8a5b75a68a38e9782a7a *man/compute.real.Rd
7cef37794ef7662235fa49425218161f *man/convert.inp.Rd
ce437a1a06a029cdd6b813820277b977 *man/convert.link.to.real.Rd
56811bea5a1812e41985adc33abb7646 *man/covariate.predictions.Rd
8cf0d1719e7eb75616ab15ba061c8bb6 *man/crdms.Rd
5d4605b401518ddc5d02570f7768556d *man/create.mark.mcmc.Rd
7347bc9fd0f52535cbd21b4637e309d2 *man/create.model.list.Rd
47a7c0565e9c43ed150b62790382315f *man/deer.Rd
771432d970c8d820900f73f3893c4745 *man/deltamethod.special.Rd
3fc7b830c0c24483faff9bdf4457c40b *man/deriv_inverse.link.Rd
7b2fcd5c32c7687e60a9fa2982d93fa5 *man/dipper.Rd
681fe702e970911e174c04e88386c79f *man/edwards.eberhardt.Rd
f802c6c3637be51b9382bbf60c8a27eb *man/example.data.Rd
78a207f682caee036da137a74b984a66 *man/export.MARK.Rd
c7ad30d8baf48fd284b2a500ed212f74 *man/export.chdata.Rd
87fb4242b22eed4cc8dfd9d6593934ba *man/export.model.Rd
8dee0fd9816bb681aee7eaf3298fef8b *man/extract.indices.Rd
bdee69b081000eb4d19e6c3b3eb573d1 *man/extract.mark.output.Rd
61ba371299bb01cdc0a070ad7b1a989e *man/fill.covariates.Rd
fbe93d77f68087e3afbfb1ea2847792f *man/find.covariates.Rd
95728fda6df282ccc4adcef9f86c87d4 *man/get.link.Rd
d257cce5335c0a1d1769750e4dcc92ea *man/get.real.Rd
f7334681571378c7d9d9d1694fe2bd63 *man/import.chdata.Rd
bb6933d4a60baf6030c21dad688ffc69 *man/inverse.link.Rd
a51f7c2a098cb0431395a7496cefa269 *man/killdeer.Rd
ee85580642bc04d3c170534ceea7478a *man/larksparrow.Rd
6935c729095ed9541df2c770ecdf76e2 *man/load.model.Rd
4e55f852746352a009eb84a8f486e86e *man/make.design.data.Rd
dac2b7113f0c79eeff40d277df25937f *man/make.mark.model.Rd
20855febacfe6408a075f8cc2f99c14d *man/make.time.factor.Rd
77aed54081c40f96bd20f7718cd2a3e6 *man/mallard.Rd
e6310f334effc76a1a4ad3e97d5c08b8 *man/mark.Rd
652b267341efbcfb70852af60ba810ed *man/mark.wrapper.Rd
6ad6de2d8e8d2652c13358d150de575c *man/mark.wrapper.parallel.Rd
af5b04bdbb8b14d32f5713bd55dd917c *man/mata.wald.Rd
20cc46f880c27c14184bcee39194023e *man/merge.mark.Rd
98c9c3d07107c1705fb4d71608c21113 *man/merge_design.covariates.Rd
458d6638f82899793cfcf8241d857410 *man/model.average.Rd
75dfeca04e351859a3eb0903748b04c2 *man/model.average.list.Rd
2fc41f3abec7de48b5947c0d2a691944 *man/model.average.marklist.Rd
67561cfcf50bdd765e2f10c319ec786a *man/model.table.Rd
87d01be5718600f705a0114899daf1b7 *man/mstrata.Rd
58ae9e0af0639c511529cecddac623d0 *man/popan.derived.Rd
e25a1dbda637cb836b39e5da62ede8bd *man/print.mark.Rd
d6aa8ae4285baf5b78fcb8b84e543472 *man/print.marklist.Rd
ffb516792c21c63f3403ff81ca5877fb *man/print.summary.mark.Rd
91b73de1144586eb1e90187f3cdb0952 *man/process.data.Rd
086169009a0cc8f9cc0cab2758ee4108 *man/read.mark.binary.Rd
0ba21f741b38edd26fabcdba56bf660f *man/release.gof.Rd
98cbb596b4c7b7c450bcfd17e87da743 *man/remove.mark.Rd
8dfc3e063ca8f9ef588d63a5f49e20ad *man/rerun.mark.Rd
ff01e8a79cee54b39ee710c5e206377c *man/robust.Rd
aca77300151e0bdabe98a2393b382866 *man/run.mark.model.Rd
76785dd350cf4f82fe7de2540f4e6bd8 *man/run.models.Rd
77827e84c3b0d0571e62572c1f07b8ad *man/salamander.Rd
a61e2446e4c4498894f404c788cae03d *man/setup.model.Rd
efb0ab1f97eb6c78d2c27bfed3aeae00 *man/setup.parameters.Rd
55d2fca7059c388914edf0a32d573c7f *man/splitCH.Rd
795e76cc2643cc452a5b6916d6db538b *man/store.Rd
5d762a92fd52b9fa45b155f231fde032 *man/strip.comments.Rd
7e4f8227d3756714f141f279848d5458 *man/summary.mark.Rd
649034095cd071dc310440c43c6568d3 *man/summary_ch.Rd
28ab2a7adced1bccafe65322fe6a74e4 *man/valid.parameters.Rd
6ddb9e46521ee75a684f2960bc8a6912 *man/var.components.Rd
a8baf50c2169e53b624d8ae8a244aed8 *man/var.components.reml.Rd
63b3d571b56ec6dc62b53be31a4b8e36 *man/weta.Rd
ab77f47697a577e783ef311dc180e270 *man/wwdo.popan.Rd
