66ac0cac53612e73fae48710140bfeee *DESCRIPTION
3a5947c4c83313e1cd3135c7510b9dfc *Inst/MarkModels.pdf
241ec6550cb977d5e61189f29e19c696 *Inst/Models.txt
4b9d04ff68bb9d826a66b7d9c35af7df *Inst/Parameters.txt
e76700a469de117e28067737d9494abc *Inst/README.txt
f6b1f65b58f0a12d8be17ad213f6d173 *Inst/extdata/BLCKDUCK.INP
74b97a50d2282afb492d1d124d3faf51 *Inst/extdata/BROWNADT.INP
d07f264c3e64e2726533c9335f9b62b9 *Inst/extdata/Blackduck.txt
ddc52aa126ce70815cf71f12a0f6adf0 *Inst/extdata/Donovan.7.inp
489c21c0ccae890d4278c6ac49c69197 *Inst/extdata/Donovan.8.inp
7bc349166ab76d6fc6b79269ab1408ab *Inst/extdata/EDWARDSANDEBERHARDT.INP
c34b4cddc49b1e62d833a04bb422fff6 *Inst/extdata/F_AGE.INP
38823e8d27c8c70477ee080de8c04afb *Inst/extdata/LD1.inp
c594eab39c0a7980e7cf8dce817a75a4 *Inst/extdata/LINEAR.INP
df39695b5f71b928f15c9b65a17c78bf *Inst/extdata/MSSURV.INP
b2a04889c534c046a767ec839de94371 *Inst/extdata/MS_rdsimple1.inp
90968dd2ba4baf436f18ca55f0f05436 *Inst/extdata/M_AGE.INP
ecb13a6d1b6beebe56087c91ecbd3c2a *Inst/extdata/MallardNestExample.inp
b78595a5af1a780aac863a380c07e378 *Inst/extdata/NicholsMSOccupancy.inp
ab4f1fa54e4f4b76479c19f113a50523 *Inst/extdata/Pass3MStrata5.inp
4265333d06cf75618091e2e951cf0d59 *Inst/extdata/RDSalamander.inp
81a70c4d6098b5b6cdcb31d3eef4f972 *Inst/extdata/ROBUST.INP
49ea636ed064df6d403fa51b585f868e *Inst/extdata/aa.inp
b696b42cb06ce7a0de608eb978e1824b *Inst/extdata/adult.inp
45d08cd799804834449507db82e5bbcd *Inst/extdata/age-transients-full.inp
a79c5989f3b66c3865552c92e5dc82f3 *Inst/extdata/age.inp
dfc804f97dec97f755df87ba57440e9f *Inst/extdata/age_ya.inp
9293e73480edcd3d006998af78f637c8 *Inst/extdata/capsid.inp
c170fb82089bf3d87652a04d1aff9753 *Inst/extdata/chase.inp
dfbbb3f90f541d117dfc307c43d18b5d *Inst/extdata/cjs3grp.inp
fb92c59c981d52e9996f02d172a32df4 *Inst/extdata/clogit_demo.inp
942a47d02d9a40b53fd725a0093d7c46 *Inst/extdata/deer.inp
7f41f86fe9178f2127d52e1dd52f809d *Inst/extdata/dipper.inp
959ebe116b5842bc36aad89741479def *Inst/extdata/dipper.txt
128e570be606ec5484643f1b308e52cb *Inst/extdata/ed.inp
b7a243ca7d0b8dc6ee8e705772a6f5cd *Inst/extdata/ed_males.inp
6042a2d31958f8a7319ab876538dcbd0 *Inst/extdata/edwardsandeberhardt.txt
239b7fc03b9d6a4921871e83ec85102e *Inst/extdata/effect_size.inp
9de4a819d0c3ec0fa57831d2d2bd3139 *Inst/extdata/effect_size3.inp
3a7ef45fae6c0e086a2d77c56d619dcc *Inst/extdata/example.data.txt
b2e066d275eb381c5f8e9790dca93d65 *Inst/extdata/huggins.inp
f43ba679ef28128871b42427e03160b4 *Inst/extdata/indcov1.inp
40246c9b16d6feb263fd3daebdca7f91 *Inst/extdata/indcov2.inp
72798486641420a5b809e60f979bb8a6 *Inst/extdata/interval.inp
b8aa386bc2ffe4d0ccd151f0d25eb683 *Inst/extdata/island.inp
1860ca3834a3d1ee964d5c519153d739 *Inst/extdata/killdeer.inp
44d3a5ecead2152e5a47d295aca3fe70 *Inst/extdata/killdeer.txt
c75c90b426d7d3008e42d8ae7ad0be86 *Inst/extdata/mallard.txt
bd89501bfeec5171a8f18c8ae4c89422 *Inst/extdata/mixed_closed1.inp
421f8c453cbddca684e9275513277cc0 *Inst/extdata/ms_cjs.inp
4d76ce0b8d0703dc6ff9f6efee7213b0 *Inst/extdata/ms_directional.inp
d4fb41eaeef0917ed3a751dd049fc9f2 *Inst/extdata/ms_gof.inp
82106501288c55966dd1e3df479d4c1e *Inst/extdata/mstrata.txt
b847e02cac5da0eef72917c59d8c52dd *Inst/extdata/multi_group.inp
c57fa98a46aa5debbe3e3cfd638ad1c6 *Inst/extdata/plover_mark.inp
8e3443f8f9da6f51db1497991a416e67 *Inst/extdata/rd_complex1.inp
5f3871bac8d7e6219e827a7b5b81bb18 *Inst/extdata/rd_simple1.inp
bf3eef98a58a04b949264a2ccba0f935 *Inst/extdata/recruit-ms.inp
aae7b6c283ce47ee1e4a45400b5dd77e *Inst/extdata/robust.txt
70149a809da484cd0a283494c8e16c22 *Inst/extdata/salamander.inp
1b8f9f67482f3f1642ac6b6aec933636 *Inst/extdata/simple_closed1.inp
13ef03c111f6f1a1fb71c4839716192e *Inst/extdata/staggered.inp
0dca82f50fcce23e638c485c44ae611e *Inst/extdata/transient.inp
0c0b6839316c3c7c95cd9842fedd7299 *Inst/extdata/weta.txt
33949ebad462c615af738183960d0949 *Inst/extdata/yngadt.inp
39ad8865679612ef956a44c67abf5c5c *Inst/extdata/young.inp
7706c5ac73fa01cead229945479e6748 *NAMESPACE
2e390ae838ee47463b3b0cc62addfce5 *R/PIMS.R
e0f918c92449bf59dbc7869c9ecad1d3 *R/RMark-package.R
7b7b838484ede8ceb67e9223a5b9c216 *R/TransitionMatrix.R
8fc655dd2a05dd863c101c6d40eb9304 *R/add.design.data.R
8802f878e5dd1a8f4f2ffdf5bef0a1c7 *R/adjust.chat.R
a651c80217620a6cc568fe6b348ba352 *R/adjust.parameter.count.R
4d1590d4ac56aa47f50f5b6e9c5e28d4 *R/cleanup.R
3cf4fede1cd1f9375b91ea0f368568cd *R/collect.model.names.R
904f1c936a14c5c8eded2078d24ff8c2 *R/collect.models.R
3772e40e9b45155912b78dbdaf76b4f4 *R/compute.design.data.R
4f94cdb18c5562031bf7659ed8672901 *R/compute.link.R
12e88a8af2cbfb106e3dfa64a478ae96 *R/compute.links.from.reals.R
530fd65dc25ba7b106eed1b7604faaa1 *R/compute.real.R
38ba674821f4d6c5de000ad293ebddf5 *R/convert.inp.r
d45a5ea41708d22cd83464c9d4050052 *R/convert.link.to.real.r
55aa2efe045dd412e2c692e6216a04a8 *R/covariate.predictions.r
9419e25694fa1d1b0ed9bed6f6591848 *R/create.model.list.R
2c9cfd002cd9d8ca4f7904955a6f5cb8 *R/deltamethod.r
edc62ba4f9ee716ba24b02971b9c8af1 *R/deriv.inverse.link.R
4a1748cc4045c854faf71e614d40b708 *R/export.MARK.r
021291ce33bbd9a4ed4247ca51a86006 *R/export.chdata.R
da4a3b02713ec9210c6fe546f4cda9b1 *R/export.model.r
9b18c91bda1fa2b79b753ecb6db633a5 *R/extract.mark.output.R
6674c2dfca9e0a1794e64de497bf66a6 *R/fill.covariates.R
2d5f2dc25736ea38594d1bef72cf70c9 *R/find.covariates.R
d01792c86f98a1d225047b3442eb66ef *R/get.link.R
6b4485085476a2db14c134f0517a7bff *R/get.real.R
ac6caa7a5b697ccf3a9085f8c82dab80 *R/import.chdata.R
4a2e7e00937651d36d87c6eb4e77324f *R/inverse.link.R
21b1754c31ea5137cc9483f9e1638aea *R/make.design.data.R
97288502b8ab49347bdc71a01f64cdd9 *R/make.mark.model.R
2baec4f3f6d65945e7de0f1c2bdd9791 *R/make.time.factor.r
96369b868eadb89fea358981fe312eda *R/mark.R
650999e138921fe9c004e38959ae9fad *R/mark.wrapper.R
fb5571c2fc77e57ff899cb51d39b8986 *R/merge.design.covariates.r
6662589360e8bbc65373fe0011428363 *R/merge.mark.r
093e7076cd9e5a6b2c7fe0a5ec189e5d *R/model.average.R
fe5c5c40909763fe56023a95b3ae388d *R/model.average.default.r
acc5924b759a9b39f34697a00a511a3d *R/model.average.list.r
135f00da42eabb8ab893ee2f3597c2b7 *R/model.average.marklist.R
a487b1d4daa77d5c6d0d3dcdafb87ee5 *R/model.table.R
93db19d243837882b57fc7fbca8a3072 *R/popan.r
7a7476c3fa77c4057760ce25334edc08 *R/print.mark.R
0ad1438aff5f76e4337c2aab5e11d7a4 *R/print.summary.mark.R
118eb4dfb835287bee09d3a1eaa77d5b *R/process.data.R
279043f7ed23620cc7f0a51e267c35e0 *R/read.mark.binary.R
1a91974cdf822b103629dfe6abe16369 *R/read.mark.binary.linux.R
72c264d2d012baca49e4f80a9f0570da *R/release.gof.R
2da676c4d0ccde10238dc56b6bedfc0b *R/remove.mark.r
3dd22563571a69ae4774da8be4cdee2b *R/rerun.mark.R
f9a2d474b0379674a38f107062ad819a *R/run.mark.model.R
87d9af2c39eec949af07957c54349064 *R/run.models.R
842f20b7c6a32b95a2037b9060dbc0a4 *R/setup.model.R
a37618b605d8a1ffb90bf8580ced9a93 *R/setup.parameters.R
6330f4e954171baad9941d6ed22d61fa *R/store.r
de9f7474470dafe5882bb28a60717df6 *R/summary.ch.r
c68da3ea1d2d43bb704f198e33b15849 *R/summary.mark.R
7c5f7ca633e9c659e6a6dfd59730efa0 *R/utility.r
82f85f99352960f27065bfabdca03a74 *R/valid.parameters.R
e7c74150affd3d3eacd18638fb58be84 *R/var.components.R
80867d7cea1f40a7896eafc87b66b5a3 *R/var.components.reml.r
039968a68ce573afb0fd97a8b05ab152 *R/zzz.R
866d7c2e23aa25300cd44939f9fee510 *data/Blackduck.rda
ad32c1fdee1b8df97e98872d97e410cd *data/Donovan.7.rda
e8bf201d53609791b005ac9a779a006f *data/Donovan.8.rda
458c2a812e5480b5771ab39b324eb14a *data/IELogitNormalMR.rda
9b0fa5db571ede2af47523bc82f44d87 *data/LogitNormalMR.rda
7fe8f719d12c121de6bfdf7098b9b164 *data/NicholsMSOccupancy.rda
6bca3bcded8863b8dc5bedab3bcbe8a0 *data/PoissonMR.rda
ff50f02d7891f32f28a0004fcfdf9cf9 *data/Poisson_twoMR.rda
cfb8a5c7aac8d35abac00b8d323b7740 *data/RDOccupancy.rda
865dc970db1f84244a54f56eb71101f3 *data/RDSalamander.rda
9b53be6d5d943985fdc474e244497b47 *data/crdms.rda
4420e8cd4398129efc6a340891195337 *data/dipper.rda
be0c535c008dba1d97fdda0b0c7eb2bd *data/edwards.eberhardt.rda
4954f907dc0c6c75327960a898ad5d7f *data/example.data.rda
fd8de7cdb2f3704b8d5dff69fe3d7325 *data/killdeer.rda
65cf2c4f0c5b1c690b798510fe95ed62 *data/mallard.rda
659ad667fd8bc2d21d28c7f2709b8c8d *data/mstrata.rda
3b611cb3bd39d2a52c507ffc0af6be2d *data/robust.rda
a9813ff6695570fedf31962394c41d19 *data/salamander.rda
00d324b835bc347ced8cc8ce396e3097 *data/weta.rda
b64ac832dd86dd154141da99bc511e3f *man/ABeginnersGuide.Rd
877daa3f9be5bf81b77f5f16d57cabf0 *man/Blackduck.Rd
2406386465f8dab2f8e2676526a4ed6e *man/Donovan.7.Rd
f7dd7550b6c61d819904f726750161ba *man/Donovan.8.Rd
513d124cfcd80023a97b18a724934723 *man/IELogitNormalMR.Rd
51f77dedc191680a41b7eea88974f1e7 *man/LogitNormalMR.Rd
40f0c1dda766c288740d2516ac422ffa *man/NicholsMSOccupancy.Rd
f32fcf78e9db2e98eb7b71aee387181d *man/PIMS.Rd
fc46192043eebbe81fd8f6e95c70f742 *man/PoissonMR.Rd
81f54f935df79c8b0fe469f738ae5811 *man/Poisson_twoMR.Rd
1402a052fe0136182e6c71f809f36950 *man/RDOccupancy.Rd
e6fd70299f57fb4af5ffcdfd27d3a3f7 *man/RDSalamander.Rd
76305faee32ca828aaf1bccc561a7693 *man/TransitionMatrix.Rd
78166ae234f867e9c2541309cf7668b6 *man/Whatsnew.Rd
b08fe2f298693b6a22dd6d324793f42c *man/add.design.data.Rd
4f47336d514f3cc60e3643a8223aae7e *man/adjust.parameter.count.Rd
192b14cfd753ffae3afea1d4da8f91bf *man/adjust.value.Rd
9c8cec6225bf248e21e88aafe1730ac2 *man/cleanup.Rd
9272cb95a0088c170aaae1a9efe9cd2b *man/collect.model.names.Rd
b86e3ec7d0cd93ba28f14de614804421 *man/collect.models.Rd
83a3e10e55e85dbddccc46e345077210 *man/compute.design.data.Rd
05ed975b9aaef0b750a22d072aa92c9b *man/compute.link.Rd
22e5b613a5114865c899ff993554235c *man/compute.links.from.reals.Rd
e3aaa3d46d7e81b8826c6187f4b7aec0 *man/compute.real.Rd
decf62124ed360889a7d90e5e74e2d36 *man/convert.inp.Rd
80c007124cd59204d5e6c675d2ab259d *man/convert.link.to.real.Rd
4f702b531113f52076d78cb0f87b6901 *man/covariate.predictions.Rd
3be7891ccd74bf27255085103230c3ca *man/crdms.Rd
c4a4034c738bdf0d6f911e881e9b177d *man/create.model.list.Rd
3fffe3566f6def0f123f52cdc2a8fbd9 *man/deltamethod.special.Rd
86bbfa11c1659381e21326b9ca57d938 *man/deriv_inverse.link.Rd
de36e31f622b433ba2dc8fd7fdabccf7 *man/dipper.Rd
3ac8da772317e36214fb62f072ee56a0 *man/edwards.eberhardt.Rd
0aa402ebf4ab12d1ecbd36cc1cffad1d *man/example.data.Rd
85524b466a98de6062d6ebfa25ac6f3a *man/export.MARK.Rd
9d5fcd2aa3c8d080a51b10be038b88e0 *man/export.chdata.Rd
3a63d17f4f6186ba7d5dd6f044155071 *man/export.model.Rd
c11e0c1750e25d3c2d6f328cc5ffe682 *man/extract.indices.Rd
9200f967aa561610f08ce03e00d9c900 *man/extract.mark.output.Rd
53e44768a580f490fcc77a6469ad0d15 *man/fill.covariates.Rd
99eb4aec0c5c3344eddcc2fc822ad625 *man/find.covariates.Rd
b0ffa394a991cd15ce43ec0c1795465a *man/get.link.Rd
d6509f4561586ad88fe32183e1dec8c3 *man/get.real.Rd
ef084e1c9e601e528eba58b7bb4ff1ed *man/import.chdata.Rd
a9e5ecf04e817c9fbbd8e108950ad5e7 *man/inverse.link.Rd
8142b54d3679f4b8b2c46846492a2e6a *man/killdeer.Rd
49dc08a341b2353df6265664516a13ce *man/load.model.Rd
88302a08e572e3a7c862c2864be81a4b *man/make.design.data.Rd
3a588c6e352a8f7a2e2e6469b4f4daaf *man/make.mark.model.Rd
c27acccde3308681b99f264efb344f4c *man/make.time.factor.Rd
6f973a2e41f652ecf6de118c569dfd56 *man/mallard.Rd
43e91e01fc32127814a12fcc52295db1 *man/mark.Rd
6e156452584afa4ac03ede4301893420 *man/mark.wrapper.Rd
4d8b8893f7a43663cab6a2751348b625 *man/merge.mark.Rd
b8a5463587661fee16693d8db8c44086 *man/merge_design.covariates.Rd
c40cd2285ed01c0dca94a15616930f84 *man/model.average.Rd
cfdbf6fc16610cffc011b9e4bf4e344a *man/model.average.list.Rd
56849947b1d49f4de51775624e0cb3a8 *man/model.average.marklist.Rd
73e1053d21f372a689c800dcb2ac959a *man/model.table.Rd
4165276352488104204cb47bf647b063 *man/mstrata.Rd
7c529d42350f7f55ed808e41eb967417 *man/popan.derived.Rd
0927f100d38e93222960078f9bda3014 *man/print.mark.Rd
68ab2ec2098aaa1d96776fe7620bf1b7 *man/process.data.Rd
f6d8ed83d9f32e4bc5a81d18d2bd191e *man/read.mark.binary.Rd
0272ad7363c9455efbb7283850d702a0 *man/release.gof.Rd
ee6ac79f700e115deb566a1e7eb2bd84 *man/remove.mark.Rd
90b19f6f5ac85bfe411f788fb62b4b8d *man/rerun.mark.Rd
7651037a97ccbb7c15f31e9f2a1602f7 *man/robust.Rd
b54a47eb569cc345182825e930935476 *man/run.mark.model.Rd
dfdea26276eb59647c8e42c9c66b833a *man/run.models.Rd
871c2c9ec3bff483ede35e12164926d3 *man/salamander.Rd
3594f0d3a6f21d2115df308c9a1e3675 *man/setup.model.Rd
5e3cfba4f91f98a1ea4c41e1fed1296d *man/setup.parameters.Rd
d7e371858452b6b79b138ea1ae717b5f *man/store.Rd
67e44ed35186be86d31eb5b9e3181d31 *man/strip.comments.Rd
b6f9a4aae9997b40e9797d0c0bcbda62 *man/summary.mark.Rd
3f5d8c1c8a54f6f0c35d74264090e0b7 *man/summary_ch.Rd
6047609769ad517a3d42c737d969a0e0 *man/valid.parameters.Rd
7faf03400dd5783c3d73db3c61b0f27a *man/var.components.Rd
4da4d0d0b3e8ad117ce2df0555cb8ec6 *man/var.components.reml.Rd
f26685d875c57c73909f89313e70cbd0 *man/weta.Rd
