02ed8792cf7f19fc4a37dedb30edb416 *DESCRIPTION
408c941937498c89977ebdf1c5327ede *NAMESPACE
21f07e2e80747b1fa9c4ad293d4ff21d *R/evaluateResults.R
38c1a92ba439c6e28fe45916d3427d3c *R/evaluateTestSets.R
e9b83fcff751ba5ffe6b550e44c5aaf3 *R/generateData.R
82585b8dbc78d7151f070a9112516204 *R/plot.R
2fc14fcfe5d6feef28f67b4880eb578e *R/utils.R
b0e3844d3e11195e010deaf1cd9eceae *build/vignette.rds
82f05aa7dde2ad0ab97b1a684b818da1 *inst/doc/RIbench_package.R
e951f5004c5fc224a2cc7936ff29e45a *inst/doc/RIbench_package.Rmd
c96405d34f3ed02202def149c45f7378 *inst/doc/RIbench_package.html
6a9593712a96870db1a221797e260228 *inst/extdata/SpecificationTestSets.csv
5ee9fdaa237c9d787e6b9020ecad1964 *inst/extdata/runIndMethod.R
d23b70b2526de692cd1c0e3e98386881 *man/BoxCox.Rd
5da4cefd2f2a11a6efb8a847599246f4 *man/RIbench-Package.Rd
2a32a85903b0c16b29853a848c07f2d9 *man/addGrid.Rd
c67ba3bded1c1adca1a25ed1aededbc7 *man/as.rgb.Rd
3a13d9abdbbdc7167ee151400e322079 *man/computeDirect.Rd
8fc8df95643216fc46f354a2f65389c4 *man/computePerfMeas.Rd
deff2472479c84d90ed4fab37009804d *man/computePerfMeasAll.Rd
be16dc2e392610ffaedc083e04774c20 *man/computeRIs.Rd
2595aeede85501aac09b65b3c9a24728 *man/computeRIsAll.Rd
109ec11d2e8b8af873fbb6311f4e98d8 *man/computeRuntimeAll.Rd
33c5ffafe1adcdee20cffc5f2856ad2c *man/computeSubResults.Rd
ecaf203b86ebe333521e3cda8067afd9 *man/defineSubset.Rd
dad3468bb1481aabf4d08f58f22bf2ec *man/evaluateAlgorithmResults.Rd
9ac92a1a64fdbef90683a9bd0346a924 *man/evaluateBiomarkerTestSets.Rd
29fbf8ea37878acab6dcda2a07783801 *man/formatNumber.Rd
a555b1c04c4785c1f5791db223ab57bd *man/generateBiomarkerTestSets.Rd
dec5ef4d20c1315bddb7fbe2b9b2ee67 *man/generateBoxPlotOneAnalyte.Rd
2ce21ec9bc7eb1a1a393a29f70ad36b5 *man/generateBoxplotsDistTypes.Rd
e63bb47cf12afdaabdefc8f69fa9dc7e *man/generateBoxplotsMultipleCats.Rd
20e59d20fb9d98a45e85f03771926e81 *man/generateDataFiles.Rd
cc17186314785d99681148d22c07aa48 *man/generateMD5.Rd
5d917b597cb9a7d95a71238f503e0321 *man/generateScatterplotsAll.Rd
2abcabe1737ff306e09b14bfdfa56fa5 *man/getBenchmarkResults.Rd
4fef383ee12c9f76153fb012211b096b *man/getRI.Rd
e18a8ca47bc1c9447593ea4bcea7b282 *man/getRIsAllwithoutModel.Rd
39fa83568500c2339b6cc970312d5e77 *man/getRuntime.Rd
e8bb14f7a5ab5ff147cd87815d564e4d *man/getSubset.Rd
2b94bc68016d723b6c984e7481d8dc03 *man/getSubsetForDefinedCats.Rd
cd86d68bc932eccec7f95129cd2f1b1b *man/invBoxCox.Rd
5a397624bb2a288a630cb547a22a7bb9 *man/loadTestsetDefinition.Rd
a160ab1436f3ba66c9b6f255c6b503cc *man/mergeAnalytes.Rd
7aeefafdaab5adc8d729155cd3a50681 *man/mergeSummaryErrors.Rd
884c2143b1a0de751dccd1b28fe5d0d3 *man/plotBarplot.Rd
622e2a77b49b4ada984d86eecd547412 *man/plotBoxplot.Rd
86fe30dab347d4c3b3a90c8519a8237b *man/plotScatterplot.Rd
57be41cf458ba31f6f8b51c272469473 *man/print.RWDRI.Rd
cfc374254f2bd15cbb8d88be4c7b97f7 *man/progressInd.Rd
91afa8c42b235e84ff8ef5873c8eda9d *man/readResultFiles.Rd
76103d6347e4f22e2fe628b99920f113 *man/readResultFilesAll.Rd
271c5627c617f7a7e14ee38580613ce1 *man/readResultsAndComputeErrors.Rd
cff24f4c9b53b4cf4a6dfd1d585875e1 *man/restrictSet.Rd
7265fda941d2be680ef190078d107f6b *man/runDirectMethod.Rd
209925a4bf3d2748d2905ab18ff032c3 *man/runTC_usingRscript.Rd
073deef0299110f7b39df8e0d23aabe9 *man/setupDirStructure.Rd
152a03082335cc534aa4fd464b8a7fce *man/writeResFile.Rd
e951f5004c5fc224a2cc7936ff29e45a *vignettes/RIbench_package.Rmd
999bb1011a8939bc6567aba0e51befe9 *vignettes/figures/Barplot_BenchmarkScoreResults.png
d56438877e2d05cb82285723a6321256 *vignettes/figures/Ca_overallPerformance.png
a3f4900d527a202bfceffebbf8ead64d *vignettes/figures/Ca_performance_PathologicalFraction.png
79ac3a266acf2608bc713ff9b09b945b *vignettes/figures/Ca_performance_SampleSize.png
9e81f214ead6a294805040c8f4ff7ab3 *vignettes/figures/heavilySkewed_performance_SampleSize_DistTypes_refineR.png
f13257c0439cf0d8a3949cf68212f0d7 *vignettes/figures/normal_overallPerformance_DistTypes.png
1b10f49a392abb557ef33bbcdeb3d95e *vignettes/figures/normal_overallPerformance_DistTypes_refineR.png
61210da800562d880c5a7e4d678abf66 *vignettes/figures/normal_performance_PathologicalFraction_DistTypes_kosmic.png
c804d4167e5f9e055a8ed707b4a01eff *vignettes/figures/normal_performance_SampleSize_DistTypes_kosmic.png
e41b19eae7adff1b9088205be3c27a87 *vignettes/figures/skewed_overallPerformance_DistTypes_TMC.png
ec26e6f6e026bdfa7205b5d7c998e971 *vignettes/figures/skewed_performance_PathologicalFraction_DistTypes_TMC.png
b8330a8c741b7e1d61dcddaf87f13917 *vignettes/figures/skewed_performance_PathologicalFraction_DistTypes_new.png
5195c0c8c0e05862c338c7a7bcbfcf46 *vignettes/figures/skewed_performance_PathologicalFraction_DistTypes_refineR.png
f55f1dd513f865140ce21dc4f8d688c8 *vignettes/figures/skewed_performance_SampleSize_DistTypes_New.png
a67bf2b8978fddd97e2cb0a9fed64d08 *vignettes/figures/skewed_performance_SampleSize_DistTypes_TMC.png
