6e3585c1107549ffdeb753bc892e780b *DESCRIPTION
57004d8c94fc94ef9085358e531e0830 *NAMESPACE
9c4a84dc8451b933f533d30a40f1f97b *NEWS.md
55b158527bae5e3a0344fa80b5b2b055 *R/GEX_DEgenes.R
ec5ac540ebb1c92cf7c12e818c25ef87 *R/GEX_GSEA.R
161ea9e28b9f80addbdb079bd0391a5c *R/GEX_cluster_genes.R
8058f2225ec1afbbcba3d314f412bd6d *R/GEX_cluster_genes_heatmap.R
b94c06d02ea575debc1a175f55bd877c *R/GEX_cluster_membership.R
9d9581f0f684c9d3c8ffea2532635a4f *R/GEX_coexpression_coefficient.R
9b367ef8522287e0dfd1479118a6b49f *R/GEX_dottile_plot.R
6786479660294ff818aecd680f403297 *R/GEX_gene_visualization.R
da4691f7074d9fe59f553cea29164803 *R/GEX_heatmap.R
4e9226ca56025845b83b4212e81c0fc2 *R/GEX_lineage_trajectories.R
79a30e67a73fb3cc3b0528d19447bc57 *R/GEX_pairwise_degs.R
3cc2405cbc6d3a9231d74412a372f858 *R/GEX_phenotype.R
0cf27dac7871e344915a7bef77ed5bd3 *R/GEX_phenotype_per_clone.R
3e1c91b377bd7202062653016320af23 *R/GEX_proportions_barplot.R
c7a196d09a0c2498f3e358b66a0ae68b *R/GEX_scatter_coexpression.R
57dea5dfe302846be6f4d79b5233c44a *R/GEX_volcano.R
d6ec02c5d58214102c9b2c5988da058c *R/PlatypusDB_AIRR_to_VGM.R
8ad99271f6ec26a29ac0a0857c9a945b *R/PlatypusDB_VGM_to_AIRR.R
3ca164da090d10b10cd3ebefffb79c3a *R/PlatypusDB_load_from_disk.R
df85b172369e408fd76ef4b2d9a8174c *R/Platypus_data.R
ab76f997ff79d3937b8e529db9ad07aa *R/VDJ_GEX_clonotype_clusters_circos.R
0eb9cd698aab6f6b1eb7a3f198506e70 *R/VDJ_GEX_matrix.R
d30e7336adc59979b91e3123388b3102 *R/VDJ_GEX_overlay_clones.R
f5b825eed6a73010e84c6cb746fda6a5 *R/VDJ_GEX_stats.R
8f329427cecfb5a09e9fbd8580526f6c *R/VDJ_VJ_usage_circos.R
0a92d7e51ef9152a936f6b8765e336a2 *R/VDJ_Vgene_usage.R
4f32edccdb68aca79b5e0945b826a850 *R/VDJ_Vgene_usage_barplot.R
4a3ba8646d2e9e63f2056930e33c489d *R/VDJ_Vgene_usage_stacked_barplot.R
92eeb60bc4e64ef798a57c5486937847 *R/VDJ_abundances.R
09b14a7a931b43db1c73812a6bd78623 *R/VDJ_alpha_beta_Vgene_circos.R
01de68600cca334b4562aacc471a22fc *R/VDJ_antigen_integrate.R
41d81b2c54ae7d19e76d22945e8a565e *R/VDJ_assemble_for_PnP.R
aaf95a0dbff4bec191c1f7aafd681a4e *R/VDJ_build.R
c48fa6dcd86fe1a6a2b23bb108fa1a12 *R/VDJ_call_enclone.R
68e04f131b7d205a824b0ba012ba8c03 *R/VDJ_circos.R
64bd90f52a64817eb875e926b1c63a75 *R/VDJ_clonal_barplot.R
b4968c685094addcff9f74e5e0e53819 *R/VDJ_clonal_donut.R
54f1f88d55824875982fd9d350879601 *R/VDJ_clonal_expansion.R
20d323c061d6ad22d4d51e352ff7636b *R/VDJ_clonotype.R
5620cbc79b3eb846b2bf18ab98fe732a *R/VDJ_clonotype_v3_w_enclone.R
22e9c12b3b590668a5807136a9e8c95e *R/VDJ_contigs_to_vgm.R
ec2f9e81a7cbdada7981f36af039d14a *R/VDJ_db_annotate.R
0a7b69f8deeaa2c93f7a444f51411036 *R/VDJ_db_load.R
dd6537efb2972f110f628deb43d7f14b *R/VDJ_diversity.R
44a2da29bb050b9f4c56552bdbe6bc9d *R/VDJ_dynamics.R
91bac35f287382702d6887ca8f42d2ab *R/VDJ_expand_aberrants.R
adaf66de7535059e45a8c60b8ec3236a *R/VDJ_extract_germline_MIXCR.R
d73de1fae517286d5c5125b6f93019d2 *R/VDJ_extract_germline_consensus_ref.R
22da682170baffe547ae18b6be8a95f2 *R/VDJ_get_public.R
853852748d1e53a81c4f0a74ae1c684f *R/VDJ_kmers.R
f6a1cf4ff6150338e4f59e835dc03032 *R/VDJ_network.R
4abf6abba9838f647bd05cac209dbdb7 *R/VDJ_ordination.R
79e1b03f04cfe683c024fec15bbc78ba *R/VDJ_overlap_heatmap.R
85cfdccd395960c1acc83aaa91a3b166 *R/VDJ_phylogenetic_trees.R
5c0668552e1a3337f53d4b4005077945 *R/VDJ_phylogenetic_trees_plot.R
ea8c6d27993d3bb5a6f3355b84b7570a *R/VDJ_plot_SHM.R
11f830336e39adc9bf3837c9b424536c *R/VDJ_public.R
7bfaf5e572ab3e7a92e2791eed3f6d52 *R/VDJ_rarefaction.R
f0cbcc86829dbe9fa8e2f906908d04ee *R/VDJ_variants_per_clone.R
8bee74b9f0f5762061af2c00739257c0 *R/VGM_build.R
78933d988371b08440cab75680dda745 *R/VGM_expand_featurebarcodes.R
f5b69e761848921922896eedc2c318f8 *R/VGM_expanded_clones.R
67a11c8e00e2a7f594324c2908c213ae *R/VGM_integrate.R
f28e35873111c73a3b601c2f9267df3c *README.md
a86b7b8b935b07aaf2f2a9d292f9bf25 *build/vignette.rds
3b3b815a71598ba82d2e4b7fdebe575a *data/small_vgm.rda
e431fea99c58bee3c2c828880444d630 *inst/doc/PlatypusV3_agedCNS.R
ed2278a52f3f288941de4415bef05726 *inst/doc/PlatypusV3_agedCNS.Rmd
c58ebcbe95e50de03d292626dc3084b9 *inst/doc/PlatypusV3_agedCNS.html
caa0bd6a71d79add66b318e54db29704 *man/GEX_DEgenes.Rd
d449f54245cb58a78b3e5341b9b2b7d5 *man/GEX_GSEA.Rd
ec1fed35e1a0dd496a3a91f28a2448a1 *man/GEX_cluster_genes.Rd
13a88fcdaf58c5213bcde2ed25fa90b4 *man/GEX_cluster_genes_heatmap.Rd
786c1b7783344ed455e5bcc84ebfe16b *man/GEX_cluster_membership.Rd
1b18b674b8b23913d9ca5621da85c536 *man/GEX_coexpression_coefficient.Rd
4d97dc389a2bf740662b215e7f3a4b1f *man/GEX_dottile_plot.Rd
fe011133b60a79f6c7151aa11a0935c6 *man/GEX_gene_visualization.Rd
f947e65281e4594dc946bb757f59392f *man/GEX_heatmap.Rd
4cda39a39dac6780669dceabdb286dc7 *man/GEX_lineage_trajectories.Rd
edf6946cf3d62bc071fe7896e2271d95 *man/GEX_pairwise_DEGs.Rd
709dc317536c4cb9aa4694a2060ba136 *man/GEX_phenotype.Rd
00fd1fb3bb92c86cd00847f397605f88 *man/GEX_phenotype_per_clone.Rd
244236591ac7685505f75b7cfa49a553 *man/GEX_proportions_barplot.Rd
1a6f308f87d602dd077a1c01d735c9cd *man/GEX_scatter_coexpression.Rd
68b613c6a08954b3e1aea6ed3f10ce55 *man/GEX_volcano.Rd
01078ee5d58c01750fc2d14928e9953e *man/PlatypusDB_AIRR_to_VGM.Rd
3e9d42073d1edd1c1c6452429ebab43a *man/PlatypusDB_VGM_to_AIRR.Rd
59aee06b7b6e89581b2c56bd444d2533 *man/PlatypusDB_load_from_disk.Rd
f5cf58004beb023646d69366e609f409 *man/VDJ_GEX_clonotype_clusters_circos.Rd
6c2155fa60837ca2c136483166275d1c *man/VDJ_GEX_matrix.Rd
2ddb6f8dd7c4f8fcd5ca3cd89eae8896 *man/VDJ_GEX_overlay_clones.Rd
597ea74daab2fa456e885f730eaff4e1 *man/VDJ_GEX_stats.Rd
2457d8c9d3740806cf0923ad653983d9 *man/VDJ_VJ_usage_circos.Rd
b2c04a7e90436d1c926ab3b7cd04b87d *man/VDJ_Vgene_usage.Rd
ceb54c9cb6d03526aefc6083ac712ce7 *man/VDJ_Vgene_usage_barplot.Rd
e54d7033619bb35f78a0b37dded42913 *man/VDJ_Vgene_usage_stacked_barplot.Rd
185583dc766a110d95c82f88484161a7 *man/VDJ_abundances.Rd
31c5e288751c204f1159e2cef5218724 *man/VDJ_alpha_beta_Vgene_circos.Rd
4b8f83000c70feaa44e0c199ca969027 *man/VDJ_antigen_integrate.Rd
a2b10ee66014dc0377661a653d960511 *man/VDJ_assemble_for_PnP.Rd
576ae2721f43ca4f800411f89e06cc6e *man/VDJ_build.Rd
0ad071aba79deffb5482c42654a58c50 *man/VDJ_call_enclone.Rd
5a341f2fb0226cc1410bff571dc80711 *man/VDJ_circos.Rd
087d6a9e154529ff9d3185db13573aa3 *man/VDJ_clonal_barplot.Rd
6d48f4e3ef4deac862496dd0a31efdb6 *man/VDJ_clonal_donut.Rd
6b01b511879b00bb680a656c75afe64b *man/VDJ_clonal_expansion.Rd
2c5f5625d0a33c9a7a01f0b8f0425018 *man/VDJ_clonotype.Rd
c0bf88e6bb184987d0f8e4b956543182 *man/VDJ_clonotype_v3_w_enclone.Rd
e346f5c2a54efbd3821e80d0a31e1352 *man/VDJ_contigs_to_vgm.Rd
72de5b61baa11ed910d0d3092a0a7f41 *man/VDJ_db_annotate.Rd
13b84889d780e01ddcc85fc96504c7bc *man/VDJ_db_load.Rd
68d02966932d6461074b6576167981c7 *man/VDJ_diversity.Rd
6bdf98035328fa3dbde82b3819da0578 *man/VDJ_dynamics.Rd
24634526f7d1bf5cfe91f337c46a5fdd *man/VDJ_expand_aberrants.Rd
39704a867e95b7de431fbe18609466de *man/VDJ_extract_germline_consensus_ref.Rd
195b21a778df6a81b85f61fe3b2c849f *man/VDJ_germline.Rd
aa813fa6eb2227df58929013213e2f7a *man/VDJ_get_public.Rd
156cae0d83f7cae807eaa611e447d46e *man/VDJ_kmers.Rd
1723e359f2580af6647ac949d1c7d38e *man/VDJ_network.Rd
53b68ca2b0151d0111ebd624e449c731 *man/VDJ_ordination.Rd
e355a58e52b6053746127524d8e10a2b *man/VDJ_overlap_heatmap.Rd
8d1f751d4d5f80bc4f6d24f0dad67079 *man/VDJ_phylogenetic_trees.Rd
06c4faceeaa9236366eb8a211a62f4fe *man/VDJ_phylogenetic_trees_plot.Rd
ad92ae138060e1db267f2a16243ad87c *man/VDJ_plot_SHM.Rd
6957bcdaca8249dd63d6703606af4490 *man/VDJ_public.Rd
18082cc086e44ffd20e0147bbe832da2 *man/VDJ_rarefaction.Rd
e92e67eba52471d385201e60735e0e61 *man/VDJ_variants_per_clone.Rd
992412594a2613e48ea0302e2d60479c *man/VGM_build.Rd
2ff371e4f598e6661522cf8e01a1ec2c *man/VGM_expand_featurebarcodes.Rd
c5a82f9d14f025b6eafd592ef1676716 *man/VGM_expanded_clones.Rd
373e85ae3babcc12f69b946cda9093e8 *man/VGM_integrate.Rd
455ccdb6a5fdee83224efbcb91ccfe55 *man/small_vgm.Rd
ed2278a52f3f288941de4415bef05726 *vignettes/PlatypusV3_agedCNS.Rmd
