46fa85f84040d3a5e9228619a4a35605 *DESCRIPTION
d58d71b0ea30f9f023a1ce861e80f16c *NAMESPACE
33ddc8e59347d28757abdb41384cce58 *NEWS.md
1347d39ce65e4b753f2e1205fc8d10e6 *R/POUMM.R
85daf6d362bbbb7319d152572ce3adf4 *R/fitPOUMM.R
992b919e9b3e9f9408e9a3107c925fe0 *R/likPOUMM.R
e56bcf67979be38d0d4f25947138c593 *R/paramsPOUMM.R
7e15affc8ad7f8f4ebfb607ecc249063 *R/specPOUMM.R
09af2fb795f5eb3139a54afef8804124 *R/summaryPOUMM.R
f6bec8069dc874edc940e0a5a71100f8 *R/utilities.R
f90310a13e0840ce37c3211ec379b646 *R/vignetteCachedResults.R
e43a165fed01a85c1c9c2b56209b4831 *README.md
ebcb928126a50c662d7a5a6675ebe375 *build/vignette.rds
1ee47ead9ce81f72eb43e493a2600c1c *data/vignetteCachedResults.rda
cf23c435e14cc422636ddc65dcfdc9d7 *inst/CITATION
cfb3364141eddc321510afa1ec6c822a *inst/REFERENCES.bib
763e82494f788bce364c6a84467b6b83 *inst/doc/InterpretingPOUMM.R
e77a452cab15bd48093e508bf3b3a0d2 *inst/doc/InterpretingPOUMM.Rmd
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b949b888fa80111ea98aa576f7d6535a *inst/doc/UserGuide.Rmd
c4125c6a82332cfcbaf8031796e47f63 *inst/doc/UserGuide.html
7105f2c41ceca65d75ba1b0f077eda9e *man/H2.Rd
a898e16ca40bc73fc10616932763fb4b *man/OU.Rd
bcfef490c7e1fc637d93fe930301f0c6 *man/POUMM.Rd
4ed73cd0c6a2179d1fbab9ef9c224264 *man/POUMMIsADevRelease.Rd
8c65f3167753feca6d9e0ed80fff8cb8 *man/PhylogeneticH2.Rd
41b00d42a534c546bd7dd767dc4cc47d *man/analyseMCMCs.Rd
b673a1ed492ff75afc37f37e49e39952 *man/chld.Rd
d723d11632c46c911e6a7111af5b54ee *man/coef.POUMM.Rd
7be797db61d5a15551cfe81b08eccc74 *man/covFunPOUMM.Rd
6afb74039347c102dfd38137c24cb788 *man/covHPDFunPOUMM.Rd
7dfab54ef978d24951836e9e4a6dcbf5 *man/covPOUMM.Rd
ad77eaaa1da8397a31fac84b59beaf3e *man/covVTipsGivenTreePOUMM.Rd
77a5c4a8ec1dbd246effe05fc1d716a8 *man/dVNodesGivenTreePOUMM.Rd
2872880790893fd950f5954a1598ed27 *man/edgesFrom.Rd
9e1bc8a079f872c9fa071c0c817d34a0 *man/fitted.POUMM.Rd
bc61c31c67783b9001daa6f7238ea260 *man/gPOUMM.Rd
ce9770a13823dabfe07c666c7447b46e *man/likPOUMMGivenTreeVTips.Rd
3ba804ad80f30ca8d85616654b289c42 *man/likPOUMMGivenTreeVTipsC.Rd
6d92c184a0bb6c07183f28576ae5cad0 *man/logLik.POUMM.Rd
c3aef2ae5f6b8c6c5e1b84b4a9ac70b8 *man/loglik_abc_g0_g0Prior.Rd
6672be59204e0cb45f8ed4c067cc500a *man/maxLikPOUMMGivenTreeVTips.Rd
d69ca3d88eb624372004ef4f220b52ae *man/mcmcPOUMMGivenPriorTreeVTips.Rd
7bc8e9293da19568b3e1a3f965fb0b6d *man/nobs.POUMM.Rd
567e123eece5356e7ecf7cc236e7ee3c *man/nodeTimes.Rd
3cb4b888451b2c44de29d17984050f34 *man/plot.POUMM.Rd
21f89e2428bf5f538bb9e48746b826bc *man/plot.summary.POUMM.Rd
92404b59686d11982ecc890129315920 *man/pruneTree.Rd
efd4e374a3a24cfebb84eba9ad7056e3 *man/rTrajectoryOU.Rd
0780d85d8ece389ef169c6fef84a6271 *man/rTrajectoryOUDef.Rd
ab1cbc35215859395952e3ddd354a5e7 *man/rVNodesGivenTreePOUMM.Rd
a715ad9c6236c07cba7bfd47af0bd844 *man/residuals.POUMM.Rd
194410773a6f6fd77d2ae0a16e37204c *man/simulatePOUMMLikelihoodMainLoop.Rd
082d7fde3a632c97e0435b051c260423 *man/simulateTrait.Rd
43dbbcc1ffab63f4169267eea04a8df9 *man/specPOUMM.Rd
115de2798048cc87dddf318f731223b7 *man/statistics.Rd
7f07e39deb39762f79e6d12d2e3c0d6e *man/summary.POUMM.Rd
f07554096178673a7ce508aec0c91e2c *man/validateSpecPOUMM.Rd
1735148b38d3060aaf8dde71de0eda08 *man/validateZTree.Rd
c7c91ee3ae90c5d8d6c791d949935ea9 *man/vignetteCachedResults.Rd
6a0d970040fd5cac6013fe4cbcecd07d *src/AbcPOUMM.h
68e9b18096c937a8536142f715c6b190 *src/Makevars
7abd016267532f846cb497275a476bca *src/Rcpp.cpp
fb30888e1ab9fbec2794f9e35fa8729e *src/SPLITT.h
e4b79ea88f51de80e2d7d4cfdfd221dc *tests/test-all.R
1376a22052c87a5e73a9d4ff5c3cecc6 *tests/testthat/Rplots.pdf
529e051292e5b30970eee993139ccf96 *tests/testthat/test-fit.R
a5433a3db1a5939775ca73b9378932b4 *tests/testthat/test-lik.R
ba24ab6a2ad4ca99d8e76c9382d6ecdf *tests/testthat/test-parameters.R
57de863bdf20028f7bd3a3a9eeb27c6a *tests/testthat/test-specify.R
e77a452cab15bd48093e508bf3b3a0d2 *vignettes/InterpretingPOUMM.Rmd
401cfb4e09b7f1383c87643203629edc *vignettes/REFERENCES-R.bib
cfb3364141eddc321510afa1ec6c822a *vignettes/REFERENCES.bib
b949b888fa80111ea98aa576f7d6535a *vignettes/UserGuide.Rmd
