2007-01-26  ribatet@LYP1015  <ribatet@lyp1015>

	* src/mcgpdlik.c: Fix bugs in the likelihood computation

	* man/fitMcGPD.Rd, man/fitexi.Rd, man/plot.mcpot.Rd, man/retlev.mcpot.Rd:
	Minor changes in the documentation

	* man/dexi.Rd: Doc file for the dexi function

	* R/simmcpot.R:
	simmcpot function now simulate Markov chains for all dependence models

	* R/simmc.R: Use the mcmix C code instead of mcamix

	* R/plotMcGPD.R: Some corrections in the retlev.mcpot function

	* R/fitMcGPD.R:
	Add the function dexi to compute the density of the extremal index
	Fix minor bugs in the fitmcgpd function

	* DESCRIPTION: Update version number and date

2007-01-19  ribatet@LYP1015  <ribatet@lyp1015>

	* src/mcgpdlik.c:
	Fix a major bug: variable lambda was multiply defined !!!
	Add also practical test to avoid numerical troubles

	* man/retlev.mcpot.Rd, man/plot.mcpot.Rd:
	Add  a  force.gpd  option  to   "force"  the  distribution  to  be  GP
	distributed. thus, documentation has changed.

	Add a reference

	* R/plotMcGPD.R:
	Add  a  force.gpd  option  to   "force"  the  distribution  to  be  GP
	distributed.

	* R/fitMcGPD.R, R/fitBvGPD.R:
	Starting  values are fitted  using pwu  estimates to  avoid degenerate
	standard errors.

2006-11-17  ribatema  <ribatema@lyp1015>

	* R/plotBvGPD.R: Fix a bug in the spectral density for model "nlog"

2006-11-08  ribatema  <ribatema@lyp1015>

	* inst/doc/Rplots.ps, inst/doc/guide.pdf: Update vignette related files

	* inst/doc/Rplots.ps: Plots for the R vignette

	* inst/doc/guide.Rnw: Change the vignette to reduce computational time

	* inst/ChangeLog: Update the ChangeLog file

	* inst/CHANGES: Update the CHANGES file

	* inst/doc/guide.pdf, inst/doc/guide.Rnw:
	Change the vingnette to be computed more quickly. Thus the pdf has
	also change

	* man/plot.mcpot.Rd, man/retlev.mcpot.Rd:
	Update the documentation files

	* inst/doc/guide.Rnw, inst/doc/guide.pdf:
	Change the vingnette to be computed more quickly. Thus the pdf has
	also change

	* R/fitMcGPD.R:
	Change the definition of the likelihood function -->> use directly a C
	code for first order Markov chains

	* DESCRIPTION: Update the version and description part

2006-11-06  ribatema  <ribatema@lyp1015>

	* src/header.h: Add entry from mcgpdlik.c file

	* src/mcgpdlik.c: likelihood function for mcpot objects

	* man/diplot.Rd: specify the date is in a numeric format.

	* R/plotMcGPD.R:
	Modify the return level plot for object of class ``mcpot''

	* demo/00Index: Add the entry for the second demo

2006-11-03  ribatema  <ribatema@lyp1015>

	* R/simmcpot.R: Simulation of a markov chain from a fitted mcpot object

	* R/plotMcGPD.R: Add a method to plot return level for mcpot objects

	* R/plotGPD.R:
	Now the function returns invisibly the return level function

	* R/internals.R:
	Change the way as the threshold is print in the printing method of
	objects of class uvpot, bvpot and mcpot

	* man/simmcpot.Rd:
	Simulation of a markov chain from a fitted mcpot object

	* man/retlev.uvpot.Rd:
	Now the function returns invisibly the return level function

	* man/retlev.mcpot.Rd:
	Add method to plot return level plots for mcpot objects

	* inst/doc/guide.Rnw, inst/doc/guide.pdf:
	The Sweave user's guide and the related pdf

	* R/fitBvGPD.R, R/fitGPD.R, R/fitMcGPD.R, man/fitBvGPD.Rd, man/fitMcGPD.Rd:
	Changing the way users ask for standard errors

	* R/clust.R:
	Change the computation of the extremal index. There was a bug !!!

2006-10-24  ribatema  <ribatema@lyp1015>

	* R/plotMcGPD.R: Add a method to plot ``mcpot'' objects

	* R/bvGPD.R:
	Functions for bivariate GPD distribution function and simulation

	* man/plot.mcpot.Rd: Add a method to plot ``mcpot'' objects

	* man/rbvgpd.Rd:
	Add doc file for bivariate distribution function and simulation

	* demo/bvPOT.R: Add another demo file for Bivariate POT models

	* R/simmc.R: fix a mistake: replace is.missing by missing

	* R/plotBvGPD.R:
	Change the eps value in the specdens function for the log case as it
	produces poor graphics

	* R/anova.R: Exchange the order of the models in the data.frame output

	* src/simmc.c: *** empty log message ***

	* src/simmc.c: Add C code ccbvmix, rbvlog_shi

	* src/header.h:
	Add C code ccbvmix, rbvlog_shi, rbvalog_shi in the header file

	* src/ccop.c: Add C code ccbvmix

	* man/internals.Rd:
	Add distribution functions and random generation for the bivariate
	log, alog, nlog, anlog, mix and amix models.

	* man/gpd2frech.Rd: Add function frech2gpd to the Rd file

	* man/fisherconf.Rd, man/profconf.Rd, man/bvretlev.Rd, man/anova.bvpot.Rd, man/anova.uvpot.Rd, man/clust.Rd, man/dens.uvpot.Rd, man/diplot.Rd, man/evmc.Rd, man/fitBvGPD.Rd, man/fitGPD.Rd, man/fitMcGPD.Rd, man/lmomplot.Rd, man/mrlplot.Rd, man/pickDep.Rd, man/plot.bvpot.Rd, man/plotGPD.Rd, man/pp.uvpot.Rd, man/retPer.Rd, man/retlev.uvpot.Rd, man/samlmu.Rd, man/specdens.Rd, man/tcplot.Rd, man/ts2tsd.Rd:
	Spell checking Rd files and format then to be cleaner (examples,
	sections...)

	* R/utils.R: Add function frech2gpd

	* R/plotGPD.R:
	Replace the ``exceedance'' component of a ``uvpot'' object by
	``exceed'' to be consistent with ``bvpot'' and ``mcpot'' objects

	Moreover, a little mistake for the point-wise confidence
	intervals. Fixing it.

	* R/plotBvGPD.R: No changes

	* R/confGPD.R, R/fitGPD.R:
	Replace the ``exceedance'' component of a ``uvpot'' object by
	``exceed'' to be consistent with ``bvpot'' and ``mcpot'' objects

2006-10-23  ribatema  <ribatema@lyp1015>

	* man/plot.bvpot.Rd: Change the doc as methods were implemented

	* man/internals.Rd: Delete function as they were documented

	* man/bvretlev.Rd: Change the doc as methods were implemented

	* inst/doc/guide.tex:
	Changes the user's guide as methods were implemented

	* R/plotGPD.R: Convert existing functions for method compatibility
	If npy is missing in ``retlev'' then setting it to 1

	* R/plotBvGPD.R:
	Add spectral density plot and a method for bivariate return level plot

	* R/anova.R, R/methods.R, R/utils.R, man/anova.bvpot.Rd, man/anova.uvpot.Rd, man/dens.Rd, man/dens.uvpot.Rd, man/gpd2frech.Rd, man/logLik.pot.Rd, man/pp.Rd, man/pp.uvpot.Rd, man/print.bvpot.Rd, man/print.mcpot.Rd, man/print.uvpot.Rd, man/qq.Rd, man/qq.uvpot.Rd, man/retlev.Rd, man/retlev.uvpot.Rd, man/specdens.Rd:
	Add documentation files .Rd
	Add method for printing, plotting object of class ``uvpot'', ``bvpot''
	and ``mcpot''
	Add anova function to compare nested models
	Add spectral density plot

2006-10-20  ribatema  <ribatema@lyp1015>

	* inst/doc/guide.pdf, inst/doc/guide.tex: Update version number

	* man/profconf.Rd: Renames the fitted object i.e. fitted -->> MLE

	* demo/POT.R: replace plotgpd by plot as we implement methods

	* R/plotBvGPD.R: Graphic title correction

	* R/confGPD.R, R/fitGPD.R:
	Some modifications related to varying threshold

2006-10-19  ribatema  <ribatema@lyp1015>

	* R/clust.R: add as.integer for compatibility with the .C call

	* src/clust.c:
	Fix a bug in ``clust.c''. add condition to break the while loop.
	if (idx >= *n){
	  idx--;
	  break;
	}

2006-10-18  ribatema  <ribatema@lyp1015>

	* man/fitBvGPD.Rd:
	Modification du fichier pour correspondre avec son code R dans \usage{...}

	* inst/ChangeLog: update ChangeLog

	* inst/CHANGES: Update this file for the new version

	* DESCRIPTION: Modification du fichier DESCRIPTION

	* man/ardieres.Rd, man/bvretlev.Rd, man/clust.Rd, man/diplot.Rd, man/fitGPD.Rd, man/internals.Rd, man/lmomplot.Rd, man/mrlplot.Rd, man/plotGPD.Rd, man/retPer.Rd, man/samlmu.Rd, man/tcplot.Rd, man/ts2tsd.Rd:
	Modification des fichiers de documentation Rd

	* inst/doc/guide.pdf, inst/doc/guide.tex:
	Modification du guide de l'utilisateur

	* src/ccop.c, src/cgpdlik.c:
	Sources C pour l'ajustement censur et les copules

	* man/fitexi.Rd, man/plot.bvpot.Rd:
	Ajout de la doc Rd pour l'estimation de l'indice extremal selon Ferro
	and Segers et de la reprsention graphique pour la classe ``bvpot''

	* R/checkThresh.R, R/clust.R, R/confGPD.R, R/fitGPD.R, R/internals.R, R/plotGPD.R, demo/POT.R:
	Modification des sources R du  l'implmentation des mthodes

	* src/header.h: Modification du fichier d'en-tte

	* R/fitBvGPD.R, R/plotBvGPD.R, man/fitBvGPD.Rd, man/pickDep.Rd, src/bvgpdlik.c:
	Fichiers relis  l'ajustement bivari d'une GPD

	* R/fitMcGPD.R, R/simmc.R, man/evmc.Rd, man/fitMcGPD.Rd, src/simmc.c:
	Fichiers relis aux chanes de Markov

2006-10-03  ribatema  <ribatema@lyp1015>

	* R/fitBvGPD.R, R/fitGPD.R, R/internals.R, R/plotBvGPD.R, man/fitBvGPD.Rd, man/fitGPD.Rd, man/internals.Rd, man/pickDep.Rd, man/ts2tsd.Rd, src/bvgpdlik.c, src/header.h:
	Modifications suite  une nouvelle approche. On ne calcule la
	logvraisemblance que pour les observations (y1, y2) o l'une des deux
	composantes dpasse le seuil.
	Ensuite, au final, on rajoute la ``contribution censure'' i.e. pour
	les points tels que y1 <= thresh1 et y2 <= thresh2

2006-10-02  ribatema  <ribatema@lyp1015>

	* man/fitBvGPD.Rd: Delete link for std.errors function

	* man/pickDep.Rd: The Rd documentation file for pickdep function

	* man/fitBvGPD.Rd:
	Fix error in the documentation. chi is not an argument but a return
	component of the function.

	Fix an error in the example section

	* src/bvgpdlik.c: Change to LF endings line

	* man/fitBvGPD.Rd: change \link{\code{ into \code{\link

	* R/fitBvGPD.R: Add PACKAGE = "POT" because one was omitted

	* R/internals.R:
	pass ``...'' in logLik.pot function for method consistency

	* man/internals.Rd: Titles must be in plain text

	* man/fitBvGPD.Rd: The Rd documentation file for the fitbvgpd function

	* src/bvgpdlik.c: Add #include header.h

	* R/fitBvGPD.R: add PACKAGE = "POT" in .C call.

	* R/fitBvGPD.R:
	Delete useless stuffs for the bivariate case. That is, std.err.type.

	* man/internals.Rd:
	Rd documentation file for internal functions and methods.

2006-10-01  ribatema  <ribatema@lyp1015>

	* R/clust.R: Add ``package = "POT"'' in the .C call.
	Replacing back NA values.

	* R/checkThresh.R: Change line type in mrlplot function

	* src/header.h: Add an header entry for Bivariate POT models

	* man/profconf.Rd: Change the demo

	* R/fitBvGPD.R, R/internals.R, R/plotBvGPD.R, src/bvgpdlik.c:
	Add bivariate POT model functions

2006-08-10  ribatema  <ribatema@lyp1015>

	* src/header.h, src/clust.c:
	Fix an stupid error, forget to change the header file as clust C
	function has changed.

	* R/clust.R:
	Change in clust.c. The function clust has changed. A cluster is now
	defined by:
	  1) ``open'' the cluster: first exceedence over the threshold
	  2) ``end'' the current cluster: the first exceedence over the
	  threshold which satisfies t_end - t_max > tim.cond, where t_end is
	  the occurence time of the latter first exceedence and t_max the time
	  occurence of the maximum within the cluster.

	* src/clust.c:
	Change in clust.c. The function clust has changed. A cluster is now
	defined by:
	  1) ``open'' the cluster: first exceedence over the threshold
	  2) ``end'' the current cluster: the first exceedence over the
	  threshold which satisfies t_end - t_max > tim.cond, where t_end is
	  the occurence time of the latter first exceedence and t_max the time
	  occurence of the maximum within the cluster.

	A little error: clust --> clust+1

	* src/clust.c:
	Change in clust.c. The function clust has changed. A cluster is now
	defined by:
	  1) ``open'' the cluster: first exceedence over the threshold
	  2) ``end'' the current cluster: the first exceedence over the
	  threshold which satisfies t_end - t_max > tim.cond, where t_end is
	  the occurence time of the latter first exceedence and t_max the time
	  occurence of the maximum within the cluster.

2006-08-08  ribatema  <ribatema@lyp1015>

	* man/clust.Rd:
	Delete the link to the ``cluster'' function of package evd as it warns
	in package checking.

2006-08-07  ribatema  <ribatema@lyp1015>

	* inst/CHANGES: Update to the current stable version of the package

	* inst/ChangeLog, CHANGES, ChangeLog: *** empty log message ***

	* DESCRIPTION: Update the version and date of the package

	* inst/doc/guide.tex: The user's guide in LaTeX

	* inst/doc/guide.pdf: The user's guide in pdf

	* inst/CHANGES: Move file CHANGES in the inst/ directory

	* R/ts2tsd.R:
	Fix a stupid bug. Replace data by ts !!! in any(colnames(data) == "obs"...

	* R/ts2tsd.R, R/checkThresh.R:
	``data'' object must have its columns named ``time'' and ``obs''

	* man/tcplot.Rd, man/mrlplot.Rd, man/lmomplot.Rd, man/diplot.Rd:
	Changes the man file as tlim has been changed into u.range in function
	tcplot, mrlplot, lmomplot and diplot.

	* man/clust.Rd: Some spelling corrections

	* demo/POT.R:
	Changes the demo as tlim has been changed into u.range in function
	tcplot, mrlplot, lmomplot and diplot.

	* R/plotGPD.R:
	Change the non parametic estimation of the density in ``dens.gpd'' function

	* R/clust.R: Add an ``idx'' column in the response of function clust.
	Graphic rectangles are now better defined

	* R/checkThresh.R: Some notation changes: tlim -->> u.range
	Add data <- sort(data) in function tcplot

2006-08-03  ribatema  <ribatema@lyp1015>

	* CHANGES:
	Rename ChangeLog to CHANGES as CVS can create a ChangeLog file.

	* man/ts2tsd.Rd: The man file for function ts2tsd

	* R/ts2tsd.R: Add function ts2tsd in package POT

	* src/ts2tsd.c: The C code for the function ts2tsd

	* src/header.h, src/clust.c, src/POT.c:
	Now we use a header file ``header.h''

	* man/ardieres.Rd: Change the example: pass option type = "l" in plot.

	* data/ardieres.txt: Change the data ardiere: add NA for the gap

2006-07-31  ribatema  <ribatema@lyp1015>

	* R/clust.R, man/clust.Rd, man/diplot.Rd, man/fisherconf.Rd, man/lmomplot.Rd, man/mrlplot.Rd, man/plotGPD.Rd, man/profconf.Rd, man/tcplot.Rd:
	Updates for examples in the documentation

	* src/clust.c: C code for the clust function

	* R/clust.R, demo/POT.R:
	Some changes for compatibility for the new dataset ardieres. And
	changes for the clust function.

	* demo/POT.R:
	Correct a bug in the demo file as the the data ``ardieres'' has
	changed.

	* man/clust.Rd: Correct a bug in the documentation file clust.Rd

	* man/exiplot.Rd: Documentation of the exiplot function

	* R/clust.R, demo/POT.R:
	New function ``clust'' to indentify clusters of extreme values. Thus,
	the demo of the package has also changed.

2006-07-18  ribatema  <ribatema@lyp1015>

	* R/clust.R, man/clust.Rd:
	Ajout de la fonction clsutts dans le package POT

	* man/ardieres.Rd, data/ardieres.txt:
	la donne ``ardires'' correspond maintenant  la chronique toute
	entire.
	Ainsi, on peut faire une application de la nouvelle fonction ``clustts''

2006-06-27  ribatema  <ribatema@lyp1015>

	* R/fitGPD.R:
	Correction d'un bug dans ``gpdmle'' : on remplace corr par corr.mat

2006-06-20  ribatema  <ribatema@lyp1015>

	* src/POTBeta.dll: suppression de POTBeta.dll dans la gestion de projet

	* R/gpd.obre.R: Suppression de gpd.obre.R dans le projet

	* ChangeLog: add ``fix a bug in gpdmle ...''

2006-06-19  ribatema  <ribatema@lyp1015>

	* R/fitGPD.R:
	Fix a bug in gpdmle: error while passing to obs.fish <- FALSE

2006-06-12  ribatema  <ribatema@lyp1015>

	* ChangeLog: Add medians estimator

	* R/zzz.R: POTBeta -> POT

	* man/fitGPD.Rd: Update doc for method = 'med'

	* DESCRIPTION: Numro de version

	* DESCRIPTION: *** empty log message ***

	* R/fitGPD.R, R/confGPD.R: POTBeta -> POT

	* man/profconf.Rd:
	Update doc for gpd.pfrl: replace ``retper'' and ``mu'' by ``prob''

2006-06-07  ribatema  <ribatema@lyp1015>

	* man/fitGPD.Rd: Updating reference in fitGPD.Rd

	* man/fitGPD.Rd:
	Update fitGPD.Rd for method 'med', changing also example.

	* R/fitGPD.R: Fix an error for hybrid estimate of method ``pwmb''.

	* src/POT.d, src/POTBeta_res.rc, src/Makedeps:
	*** empty log message ***

	* R/fitGPD.R:
	In ``gpdmed'' fix an stupid error: object ``x'' was not defined as an
	argument of the fucntion !!!

2006-06-06  ribatema  <ribatema@lyp1015>

	* R/gpd.obre.R:
	1) Cration fonction ``score.gpd'' qui calcule le score pour la GPD

	2) Cration fonction ``fish.gpd'' qui calcule l'information de Fisher
	   pour la GPD

	3) fonction ``gpdobre'' arrte jusqu'au point iter.obre de Juarez

	* R/checkThresh.R, R/confGPD.R, R/fitGPD.R, R/gpd.obre.R, R/plotGPD.R, R/simGPD.R, R/zzz.R, demo/POT.R, man/ardieres.Rd, man/diplot.Rd, man/fisherconf.Rd, man/fitGPD.Rd, man/lmomplot.Rd, man/mrlplot.Rd, man/plotGPD.Rd, man/profconf.Rd, man/retPer.Rd, man/samlmu.Rd, man/simGPD.Rd, man/tcplot.Rd, src/Makedeps, src/POT.c, src/POT.d, src/POTBeta.dll, src/POTBeta_res.rc:

	* R/checkThresh.R, R/confGPD.R, R/fitGPD.R, R/gpd.obre.R, R/plotGPD.R, R/simGPD.R, R/zzz.R, demo/POT.R, man/ardieres.Rd, man/diplot.Rd, man/fisherconf.Rd, man/fitGPD.Rd, man/lmomplot.Rd, man/mrlplot.Rd, man/plotGPD.Rd, man/profconf.Rd, man/retPer.Rd, man/samlmu.Rd, man/simGPD.Rd, man/tcplot.Rd, src/Makedeps, src/POT.c, src/POT.d, src/POTBeta.dll, src/POTBeta_res.rc:
	New file.

	* ChangeLog, DESCRIPTION, data/ardieres.txt, demo/00Index:

	* ChangeLog, DESCRIPTION, data/ardieres.txt, demo/00Index: New file.

