c6b8c63cf85853468b29d7c9d4e34edc *DESCRIPTION
d68f73e650cea258f8823aeaf4c5c66f *NAMESPACE
9c7096e6dd4eda93b2e423c51f0149bc *NEWS
36f8df8c0e7570b7f950d254425b7352 *R/Bioc-layer.R
f0493e977a38474e60ee395d292e7526 *R/NMF-class.R
cb92fbe2ad8ed07d3b6988790361cf89 *R/NMFOffset-class.R
56c06d6a59b72229d6fed8139b5917e1 *R/NMFSeed-class.R
088786751f727fd49e8552d1daf8e0d8 *R/NMFSet-class.R
29672b2daa52e314f3f18bcf77620437 *R/NMFStrategy-class.R
7c005d6fc277f6c4f194b3be145e9e11 *R/NMFStrategyFunction-class.R
a6131c2cc78d70c82dc06cd576e2d454 *R/NMFStrategyIterative-class.R
8b675e8cdf838d10fd18fa42f2743c11 *R/NMFStrategyOctave-class.R
30859bfe754775724fc2c9db27b2d17b *R/NMFfit-class.R
d4a9ccb2a64df0fcc003732b22087b29 *R/NMFns-class.R
80b6b01b74429b97af122dbdac7a322b *R/NMFplots.R
06ce7f9fb62284b85f8faea26cd9bc08 *R/NMFstd-class.R
ca2e56e9930f3abdb83035d88e1cd34d *R/aheatmap.R
2215efb3fafbbae155830aed6b0b3ae1 *R/algorithmic.R
f07c7baa502a8f6faaa2b4090e821c6a *R/algorithms-base.R
2c3966676e2152d4450ae9064654ad03 *R/algorithms-brunet.R
63b7c1cb960a4e45350c0aec774ac092 *R/algorithms-lnmf.R
74d8ac20d6c68feb8b8880d088dcd5aa *R/algorithms-lsnmf.R
599b71658bde29550748a28b50478391 *R/algorithms-pe-nmf.R
c7345e2125689ff69487338672fead40 *R/algorithms-siNMF.R
edba7284d5e4c4d06c91a9639745c571 *R/algorithms-snmf.R
da43e5b962e97c8602f9f34d77284b34 *R/atracks.R
53df4d8c023cc7e30a61cd7450fed490 *R/colorcode.R
f8400931ad9ba149f6189ce152232c86 *R/data.R
d5c1883b5350a8285e19c2772ceb50d8 *R/extractFeatures.R
eafc45bbbdc3cb00915fe674be19b24a *R/fixed-terms.R
034bc6990f9dfac60255adbbf04004c8 *R/grid.R
5cf50ed45523796cab2a7a9533fd6981 *R/heatmaps.R
4aff1d583518ddab48b37ac687b9a587 *R/nmf-package.R
9b4222aeadf5e0ab1ef564adbf5ee3e8 *R/nmf.R
e80a1bd962298c79fcf8ab45f7753440 *R/nmfModel.R
d3319b081034feaabad58041056e46f0 *R/options.R
99e230d97e6d59dc209d76c98acc0746 *R/parallel.R
7685f60dd4e45e5bbb8f82a5efea1400 *R/registry-algorithms.R
538af32becdb1298a73bfa3944151f9d *R/registry-seed.R
9b69b58f7d99ca9e3baa42e2b697bff9 *R/registry.R
c28c1144175993becd60f5a16156a3e2 *R/rmatrix.R
b1d44e778d211021bc1754e90551c7c5 *R/rnmf.R
dd767a7d1fde7adfe30b3fee7cf86f5b *R/seed-base.R
f924871fced5c09882f65b8c5ccb91d7 *R/seed-ica.R
5ae81c6a61fc0e16090acde2f16da5d4 *R/seed-nndsvd.R
5c089f8e4c650a1621c2a3734c4c3ed9 *R/setNMFClass.R
5017945c10bf9b95560568b58c90559a *R/simulation.R
610b78f4f8f21a5a85d97967e4577bc8 *R/tests.R
ee08af1846934d447a66346401663a98 *R/transforms.R
439cf5a391b3a42fac240e9e7d9eef46 *R/utils.R
77bc2b9255b6a8b6044e67e08ec91284 *R/versions.R
5a473fb9c6d8ac2df77eaad41c9d0f6a *README.md
551e2ca0a05eff9062c105483449fac4 *TODO
f8015e2bc710fb0bf869d2fdddf90e73 *data/esGolub.rda
7ee636d67aaf85d2b38c87f512559c1d *demo/00Index
f033326bf7a71b41ad12053bf63cc699 *demo/aheatmap.R
1772a84edd497138e1c2026608d99348 *demo/heatmaps.R
51502b8ceeab50a22383047790cc5ab6 *demo/nmf.R
64e0559e3860021948647aaa5f831499 *inst/CITATION
a896de423cd3c5eecb1be02cd4c2ee2a *inst/REFERENCES.bib
88679b671fa8faa9e168376ac64393bc *inst/doc/NMF-unitTests.pdf
a75f018cb61ad913a025effd71206737 *inst/doc/NMF-vignette.pdf
963717163ddec8548728670e0086f4a7 *inst/doc/heatmaps.pdf
8228eb196a5735d46af06c261500aa04 *inst/matlab/brunet-run.m
71994e2544b282cc0ad714afa1a7f3a2 *inst/matlab/brunet.R
fa73189315fe9f4bf9084b364184c5de *inst/matlab/brunet.m
ede84a7c14827aaf8388753d3782649b *inst/tests/runit.NMFSet.r
185a0cc2211506feff114fa1f7720e1f *inst/tests/runit.NMFStrategy-class.r
161eebc525ecef5470172b771f09a816 *inst/tests/runit.NMFclass.r
ba38b9bbe7cb50d383f2f9fb021a6d82 *inst/tests/runit.NMFfit-class.r
973653464b2528c78a55f961736e7df0 *inst/tests/runit.aheatmap.R
394e1777149012806267bac6a1a9ea0a *inst/tests/runit.algorithms.r
d989ecfa90aef8cc16a84520fb3763f4 *inst/tests/runit.bioc.r
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8f6536dcb8486ec69a782acbdaf4e2a1 *inst/tests/runit.interface.r
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4fc04c7ba5d73eb1b804a9d25c436a3f *inst/tests/runit.utils.r
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8d01c42e25041f7fe446b3786d435d2b *man/NMFStrategy.Rd
5c94b9595c875433cb19171da1a62758 *man/NMFStrategyFunction-class.Rd
18cd07fb2cccaa6d2600fefe5c47b7a9 *man/NMFStrategyIterative-class.Rd
6d0a4b51810da6530cf86786526e6ef8 *man/NMFStrategyOctave-class.Rd
78be8a28b54ce4677d81d02de4065493 *man/NMFfit-class.Rd
b58b46785c8389d9612b7037ce88e07e *man/NMFfitX-class.Rd
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21d44a016f6bbddd917d6366edf73b02 *man/NMFfitX1-class.Rd
fbab38ba73159c74a6d9810d167657b6 *man/NMFfitXn-class.Rd
1c8156557ef05b43203c99c95884cf1e *man/NMFns-class.Rd
7e2ba8855eab368d017b73ea5721df20 *man/NMFstd-class.Rd
9ee059841e246930ac4775503e3c3c62 *man/RNG.Rd
8b66c7ab49c34b0e5df0c652d45d437f *man/SNMF-nmf.Rd
923eea4d3b52afd5f8771561381e9596 *man/Strategy-class.Rd
28877eb83332222d0a67473a16148fbc *man/advanced.Rd
bd3304fe742a7a3721f5a34b2143e011 *man/aheatmap.Rd
762c9a6fd51a723065df7becaa801083 *man/algorithm-commaNMFList-method.Rd
23b560ee5c0e22253100cd1f8effe26b *man/algorithm-commaNMFStrategyOctave-method.Rd
a19ba220e45e14f1e601e706c7b9a947 *man/algorithmic.Rd
78931b3174c06c3b193c4d55a0be8863 *man/assess.Rd
20413d9a4e878340f471a26415386685 *man/atrack.Rd
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34b1bc42e4f0457550b1cedf48d1e4aa *man/basiscor.Rd
1810d6750bc88981b602808d9f673c4a *man/bioc.Rd
182672f1ed5b39098c5127c0d1b96a8f *man/c-commaNMF-method.Rd
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30b38d0eb549f60d498fea802752f9e8 *man/ccRamp.Rd
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94b8ec67220a6c9cb58bf5a9d07c21ce *man/cluster_mat.Rd
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4191760c707e50acc9085b946e6972e4 *man/consensus-commaNMFfitXn-method.Rd
1adf8241b895a1da992f6fd39b394d60 *man/consensushc.Rd
00357312e2fb0196a0c380f4134d2f32 *man/cophcor.Rd
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6a780fc1d076b6939f8f36f58c5a564d *man/dimnames.Rd
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0eda8c23e3906c11c2894eee60b12e26 *man/dispersion.Rd
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88a5dfa5c7ba2050d696a600367f0570 *man/esGolub.Rd
8b9cf8f608596ecb4b6b2884c9efa326 *man/fcnnls.Rd
4e88cb638c16878bebdafcd8d4cb290a *man/fit.Rd
3af34c861007ff44c48e9e63b439b8ef *man/fitted.Rd
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c2d293794ae0e4dfcdfd1874dc11fd6b *man/heatmaps.Rd
c103f3feaa7e2c4ddb4b5cb2de75356d *man/inplace.Rd
92dc938315344268f74ccf44d78b4498 *man/lsNMF-nmf.Rd
ad4bea9f6bf8da8c5b8af058d4e70581 *man/lverbose.Rd
83ccd902c78857036785b022791144a5 *man/match_atrack.Rd
0ae5a5ae53a6c875951fab0d81910592 *man/nmf-compare.Rd
68738594c34191e44b4e29752c41dce8 *man/nmf.Rd
b5a35acf90da3f5d014c3686d234368d *man/nmf.equal.Rd
66f1629c924874cce77da2f98abf3cde *man/nmfAlgorithm.Rd
f9cb9d24d68ee319e7593c1d2fee3223 *man/nmfApply.Rd
519525369379763336f0763bc8f780ec *man/nmfCheck.Rd
21b7631978c76ce245ad31f051f9e2f9 *man/nmfEstimateRank.Rd
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8bcfc71751625b94d5a2677cefab1ee9 *man/nmfModel.Rd
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0b23d2b437e4da9fc593dfe5e5a2b0af *man/nmf_update_KL.Rd
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088fdc87b17f2c8cd86bb4e95cfb7cba *man/nneg.Rd
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ca58350f90998275f533e264d5ce5942 *man/objective-commaNMFfit-method.Rd
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1b26866d20f593b9a4d791975d0768f2 *man/parse_formula.Rd
2959063b2e6978de03a0bf0d3b314046 *man/plot-commaNMFfit-commamissing-method.Rd
284bbfd3eb8abcf3eb4313ef6e86abe6 *man/predict.Rd
c7e7823d44c749afb687ca489cb9ad52 *man/profplot.Rd
08215b7875086313b09fecf8e5484de2 *man/purity.Rd
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3560f009b84aa4bf1d3dfcbc1ecb1e16 *man/registry-algorithm.Rd
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729ea7b531111b95fcf0bc35799e6b29 *man/rmatrix.Rd
709a2555ed6e06967fcd8a76b05e1094 *man/rnmf.Rd
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67dd23b7d9dd5739289857be80513bbc *man/runtime.all-commaNMFfitXn-method.Rd
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725f9a06d06b5217b56b1afeb5b473a3 *man/scores.Rd
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90119b84cf9e8a6c4d6faeb60d0c6cd9 *man/setNMFSeed.Rd
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515b08c8a685e823723afeb4a1a313c8 *man/show-commaNMFfit-method.Rd
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e6a7d35fb160e28931b03173e82cde35 *man/sparseness.Rd
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556df246387b6011ea4dd9d154ede8f2 *man/stop-NMF.Rd
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1322777400be65e75d3bbd51975e9670 *man/utils.Rd
7cc4426f76a914383e70b17f2f35c312 *src/distance.cpp
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e78941582fb2d47fd1f87f9a48a37729 *src/euclidean.cpp
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8284d13b1fab6283e7d1890b6b089133 *tests/doRUnit.R
289dd6bc1a722221cbce6e0d8ce1293c *vignettes/Makefile
25250e9f9091d82e2dab93055405ec63 *vignettes/NMF-unitTests.Rnw
0724169df18880f09973f6ba6369f3d3 *vignettes/NMF-vignette.Rnw
8411f37b1fb8443ec2d3fff069c47c43 *vignettes/heatmaps.Rnw
b051e014f64663dcb193542f01c9ef7b *vignettes/src/NMF-vignette.Rnw
c281ae2285729d8ddfb72a1dd198b148 *vignettes/src/bmc.R
e80ff821d37969bdb7ff73081b8f7c53 *vignettes/src/consensus.pdf
54a991d25a8a26cdc9515458b7e8180b *vignettes/src/heatmaps.Rnw
