Package: NMF
Type: Package
Title: Algorithms and framework for Nonnegative Matrix Factorization
        (NMF).
Version: 0.16.1
Date: 2013-02-27
Author: Renaud Gaujoux, Cathal Seoighe
Maintainer: Renaud Gaujoux <renaud@mancala.cbio.uct.ac.za>
Authors@R: c( person("Renaud", "Gaujoux", role=c('aut', 'cre'),
        email='renaud@mancala.cbio.uct.ac.za') , person("Cathal",
        "Seoighe", role='ths') , person("P.", "Brunet", role = "ctb",
        comment='method: brunet (Matlab original version)') ,
        person("H.", "Kim", role = "ctb", comment='methods: snmf/r(l)
        (Matlab original version)') )
Description: This package provides a framework to perform Non-negative
        Matrix Factorization (NMF). It implements a set of already
        published algorithms and seeding methods, and provides a
        framework to test, develop and plug new/custom algorithms. Most
        of the built-in algorithms have been optimized in C++, and the
        main interface function provides an easy way of performing
        parallel computations on multicore machines.
License: GPL (>= 2)
URL: http://nmf.r-forge.r-project.org
LazyLoad: yes
Depends: R (>= 2.15.2), methods, stats, pkgmaker (>= 0.15.2), rngtools,
        registry, digest, grid
Imports: graphics, rngtools, stringr, grDevices, gridBase, colorspace,
        RColorBrewer, iterators, foreach, doParallel
Suggests: RcppOctave (>= 0.8.12), Biobase, fastICA, doMPI, bigmemory
        (>= 4.2), synchronicity, corpcor, xtable, devtools, knitr,
        RUnit, mail
Enhances: Biobase
Collate: 'rmatrix.R' 'nmf-package.R' 'utils.R' 'simulation.R'
        'versions.R' 'colorcode.R' 'options.R' 'algorithmic.R'
        'atracks.R' 'grid.R' 'aheatmap.R' 'NMF-class.R'
        'extractFeatures.R' 'setNMFClass.R' 'NMFstd-class.R'
        'fixed-terms.R' 'NMFOffset-class.R' 'NMFns-class.R'
        'nmfModel.R' 'NMFfit-class.R' 'rnmf.R' 'heatmaps.R'
        'NMFSet-class.R' 'registry.R' 'NMFStrategy-class.R'
        'NMFStrategyFunction-class.R' 'NMFStrategyIterative-class.R'
        'NMFStrategyOctave-class.R' 'registry-algorithms.R'
        'algorithms-base.R' 'algorithms-brunet.R' 'NMFSeed-class.R'
        'registry-seed.R' 'seed-base.R' 'parallel.R' 'nmf.R'
        'Bioc-layer.R' 'transforms.R' 'NMFplots.R' 'algorithms-lnmf.R'
        'algorithms-lsnmf.R' 'algorithms-pe-nmf.R' 'algorithms-snmf.R'
        'algorithms-siNMF.R' 'seed-ica.R' 'seed-nndsvd.R' 'data.R'
        'tests.R'
BuildVignettes: no
Packaged: 2013-03-27 08:21:05 UTC; renaud
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2013-03-27 11:14:29
