b53527ca2b90a07bd35b2a75bd0c0239 *DESCRIPTION
6f09cc2cf8398e7d7edea771c5d21909 *NAMESPACE
45e466e58c5fcb3169d16bda2cd776a8 *NEWS.md
cad5b8eaf44c00e8400ef12fbd79f048 *R/GSE74821.R
57fa28be7df7accb4e266c2934af5f76 *R/NACHO-package.R
42dbe079430b789295768fddfdf0298d *R/autoplot.R
3e9e59d6fcbb86115f8d2f9ba47bbebb *R/check_outliers.R
68444fa97890384dfbf33f30184adfe3 *R/deploy.R
1e0f6fc26b347a9a804f1e40df9b292e *R/factor_calculation.R
e95e90f7bc36b2b91acf7361f3b3c3d1 *R/find_housekeeping.R
50b798d8cce4af4d5d4bf720e3e774e2 *R/format_counts.R
688e399e098ed69ec17eebeda5f38cc4 *R/format_tag_content.R
c81a2c151affd1e831b11019294736fc *R/geometric_housekeeping.R
8e736bbbd0c20f1fea747363fa1151a9 *R/geometric_mean.R
c2961fe6f0d11d835a7d18dc32e8db50 *R/geometric_probes.R
4cfebc3c93f16be027cf84191e4c4f53 *R/load_rcc.R
1805383c4e3e9f565888898e54554311 *R/norm_geo.R
f83cc25de63b0513d77e52213d04af94 *R/norm_glm.R
0e2b2c51b9974fa0700d8a80a6b4c39d *R/normalise.R
63e13058402cbe656333e567030bc315 *R/normalise_counts.R
78e5ebbc276a7e7a7f0e8bf4230f60b3 *R/print.R
37c47163a4bcc742c0e086764281a04c *R/probe_exclusion.R
f1ba85a68e27ae5ca67f87b9af785caf *R/qc_features.R
9227a637d45e06eced46e9316e4115c7 *R/qc_imaging.R
ac19cd7c0737b02afd591976117e4c3f *R/qc_limit_detection.R
8584aad6290cb673b3b0dba78643a066 *R/qc_pca.R
c4a7778a43aa882d92d0d96e74c39292 *R/qc_positive_control.R
a085df9eef45749a4ba017aff4f9abb5 *R/qc_rcc.R
002c0e2c3102c9a40557e2aff68ef276 *R/read_rcc.R
857a49f2a89c987fd7f152f8f559f010 *R/read_tags.R
fe885930c725406dbae78756b60c9ad6 *R/render.R
9d1bf9b4069be4899057f6afd7ddd8ca *R/utils.R
8aa0d13ccf43d94676843450f98d31cb *R/visualise.R
2bf54dcae92d7ccf4c96d782ea7477d0 *README.md
1961639f6f4f7f9efffa91b624b3d060 *build/partial.rdb
68d75bdbf260930ad0590e93676bf358 *build/vignette.rds
13dc38b0b8aa783b1ae71144dc3e82e4 *data/GSE74821.rda
398ba36d3dd04866327aaebc91055e07 *inst/CITATION
88b01312b84700de8c2619cb2f2aaf44 *inst/app/app.R
a29c16869853ad8d20497ece0fe0d166 *inst/app/utils.R
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70fbe7c023f125296c31dce515012b64 *inst/app/www/about-fov.md
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1fb0b04f2d089ebdcd044eef03414949 *inst/app/www/about-nacho.md
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afb265e2f25a22342a33fcef9f5836d4 *inst/doc/NACHO.R
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3c332caf05cb1b5d5f89ffddb0a3f4cb *man/GSE74821.Rd
59e4cf17f9d274f5496080efde415c83 *man/NACHO-package.Rd
dfa9d12c119c1fcb1f0dc67340a33b9f *man/autoplot.Rd
aa198d9ea200e0d30fa21b08635e5a2c *man/autoplot.nacho.Rd
25b16fc43b8bc170690096d3f88068e5 *man/check_outliers.Rd
f00c5a1387f2d50c8cac797a39ae7b05 *man/deploy.Rd
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18964f2b3f6eb33bbd0afed7a8341320 *man/figures/app_screenshot.R
4e7c88d9934a42c3be82f4f5342eea48 *man/figures/nacho_hex.png
15b2095b45deefa08334299e52090b08 *man/load_rcc.Rd
97dc86cc347271bb796dadcb3f85e2cf *man/normalise.Rd
39ee337a853146130b480215ffb03ae2 *man/print.nacho.Rd
216b1dc061b39b88f8e0da55c0dec03c *man/render.Rd
2727d84694aa6d17a80e6b97d216bec2 *man/visualise.Rd
4bdebc951905855932f7eefe0e3f8762 *tests/testthat.R
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4544f7cd4dd760bf8ffbc931133c018d *tests/testthat/plexset_data/plexset_10_10.RCC
1383357065dfec8fdf040ee39bfefe2a *tests/testthat/plexset_data/plexset_11_11.RCC
86c4c1ffb53f853688121d8269dce989 *tests/testthat/plexset_data/plexset_12_12.RCC
70122b5e79e2f71bd90cbeb2b84a2676 *tests/testthat/salmon_data/salmon_01_01.RCC
3981b3c7f060e0f6e06e21ccc4ea15c9 *tests/testthat/salmon_data/salmon_02_02.RCC
52b9f8b01777e6b38e986702461e3386 *tests/testthat/salmon_data/salmon_03_03.RCC
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89700089e1db58597177592be82ff4fc *tests/testthat/salmon_data/salmon_06_06.RCC
99bbc78596adcfa7f98ce4a531535747 *tests/testthat/salmon_data/salmon_07_07.RCC
390ca3a58c892bffb0c4042c0aa9d3ba *tests/testthat/salmon_data/salmon_08_08.RCC
71fe6e379116d4de969d3e87f7b5a9ee *tests/testthat/salmon_data/salmon_09_09.RCC
067ca24441be5d043818df426c012b26 *tests/testthat/salmon_data/salmon_10_10.RCC
40974e10fc407a6f7d937a7c62bb5339 *tests/testthat/salmon_data/salmon_11_11.RCC
b207567c62f3b3e20cfa137dd4cfe354 *tests/testthat/salmon_data/salmon_12_12.RCC
ef64e320235ed7ebe091d2350e42b883 *tests/testthat/test-autoplot.R
c10d7b7ff8dfa15985928059694d4556 *tests/testthat/test-check_outliers.R
1e81d4c6a9aa3c05963ae4af0cfb81a1 *tests/testthat/test-deploy.R
d20304037f44bbe79a3339d426c9162b *tests/testthat/test-load_rcc.R
23d9476976700c45b080d4e513348153 *tests/testthat/test-normalise.R
c3c91eb9d56011e5557f882ce758371e *tests/testthat/test-print.R
4f150ad3f0ef4a2feaba25f265c55628 *tests/testthat/test-render.R
be9c503e2ba0c7124852f620b58877a1 *tests/testthat/test-visualise.R
05730a0816ae66140a54ea7444a8b8dc *vignettes/NACHO-analysis.Rmd
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3c1eed7ad08d5552c80753c58556a315 *vignettes/nacho.bib
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