528920406b391d0452f54265af2c8969 *DESCRIPTION
82b43886e67574b1aac088559c091e43 *NAMESPACE
4b58ab95865d1aaf6a9b314d99e99f80 *NEWS.md
df6cc46bc7fae1a55b713f3d5065b35a *R/Mega2R-package.R
ebe4c3e88bda3661d3b0f3e1fdcc620d *R/RcppExports.R
ffb8fe77c366354e08ea17c2535b865e *R/mega2famskatrc.R
d2f96abce1bca825de20ba302a418fdb *R/mega2gdsfmt.R
f505be38f10a33c921e7602f3b3ad3cc *R/mega2genabel.R
d122ac501afd2826c3ebb944fcff6e71 *R/mega2genabelexternal.R
78988a7b2b078d3c3b2f8827b7437453 *R/mega2genabeltst.R
2c1da391c8c957aae3f53f3244dd532e *R/mega2pedgene.R
7ab4e7c7088a68a15caea99657e80695 *R/mega2rcreate.R
e837f1fcc517726bcda9b916923caed8 *R/mega2riterate.R
064c443deae1cec43de499e47550a5ac *R/mega2rtutorial.R
46017e7c06e97613d32c235a6753313e *R/mega2skat.R
a0ec49e7fcf09dfa937829fdae105793 *R/mega2vcf.R
10629ca795d61ae534c965555ed36b59 *R/sysdata.rda
36b5d2c321c8b70ed64ffd316a3bb8ab *R/zzz.R
aed7b9158a4002e3388077c2cfdcc881 *build/vignette.rds
ab3bf3ef5a131649216bbe64e67f88a0 *inst/doc/mega2rtutorial.R
b0a6f8ced0c06e355f581d2a0c56b0bb *inst/doc/mega2rtutorial.Rmd
89e6b0caa0b5912d2f1bc75cb1ee42f1 *inst/doc/mega2rtutorial.html
9dbc12015b7802ad30e9be56829fef05 *inst/exdata/MEGA2.BATCH.seqsimm
056bb7c2231af5f4b42ded2eedd1fbfc *inst/exdata/MEGA2.BATCH.seqsimr
cae3bf5d058a7d501c4a9c40ae9adc8a *inst/exdata/MEGA2.BATCH.srdta
d940323006845b072b4994544626697c *inst/exdata/MEGA2.BATCH.vcf
217abeea2222eb9c342f51cfbc6102da *inst/exdata/Mega2m.map.gz
10b81ba2e8dbdbae39b18d0635cb4e72 *inst/exdata/Mega2m.ped.gz
df7db5658cb1f73f966f28ed227e1d57 *inst/exdata/Mega2r.map.gz
abc19df85846e02899e6b2e2b0c6c427 *inst/exdata/Mega2r.ped.gz
9a130c47c77f82af1fb93441083b462e *inst/exdata/seqsimm.db
a9ad79e587766c646fdbe7d5be3bc667 *inst/exdata/seqsimr.db.gz
5b22d1dbb37207c4cc996076857b946c *inst/exdata/srdta.db.gz
ecc393d4af7f6dcc09d245487535577a *man/DOSKAT.Rd
7d70c0fde5564344350f0e4dae7f9752 *man/DOfamSKATRC.Rd
2b13cd760923c7597bbb1e10bd3e7edc *man/DOpedgene.Rd
30d659e2f0c0998992284dcb928e50cc *man/Mega2ENVGenABEL.Rd
423d87345d11155f602d84024e25dfac *man/Mega2GenABEL.Rd
63e9f491f7024b86dd9bb35795c7a59d *man/Mega2GenABELClean.Rd
2e5aeeeacce63fc8fb3e68e3cc0ae4e7 *man/Mega2GenABELtst.Rd
c1413639f8407697ff9060c13cb40520 *man/Mega2R-TBLS.Rd
b3e0601dfde171206404a5ed711d7de4 *man/Mega2R-TBLSFilter.Rd
a1652962b9141868f8b2e4d33bb1fb16 *man/Mega2R-package.Rd
0f4527a2757e288287783a955275ff94 *man/Mega2RVersion.Rd
7e0a106f718bff943407e2ed9e03f6fb *man/Mega2SKAT.Rd
219ecacdbafd5945b489d620d821359a *man/Mega2VCF.Rd
5ee44370a4851a2b85ef170cc433f7c5 *man/Mega2famSKATRC.Rd
a25b3197202fee3c7b21ef758192b8df *man/Mega2gdsfmt.Rd
a3150d1bad1d15375e295825e926901c *man/Mega2pedgene.Rd
786b227dc7076544246d5f1e660522bb *man/applyFnToGenes.Rd
9f49869fd6bc77356bf22e97d3e89465 *man/applyFnToMarkers.Rd
10fb79158a5db6e4ea652ca9b58ca24b *man/applyFnToRanges.Rd
72a1d04a88b5d4d2f0e6f00bd113d71e *man/clean_mega2rtutorial_data.Rd
43e532651345014322b64579ecff983c *man/computeDosage.Rd
bd80b006125af502ca1fdd3e6eb2f5d5 *man/dbmega2_import.Rd
e204909947aa073d5892731700a58b1b *man/dmpPed.Rd
b3a265154f516d4e1eaead7f597910ce *man/dump_mega2rtutorial_data.Rd
5c64fa9a0f9dd24379607fb3d1a89c97 *man/getAlleles.Rd
ef27aeeab53916a89bcc15b95a97eadd *man/getgenotype_person.Rd
369735f3829d7688076332e22a8dd8a5 *man/getgenotypes.Rd
c81dbd99aa3b9c944bc5435cc9cfdcd3 *man/getgenotypes_R.Rd
d28dd81e4d421a452d0f0ec7e3b9718a *man/getgenotypesdos.Rd
94937b3dae3c61c30840577e57e6ce56 *man/getgenotypesgenabel.Rd
7a6e398eb8513faea5e92d4cdff28b7d *man/getgenotypesraw.Rd
08d7b69afb7e75a99a9a38a6e8aae0a6 *man/init_SKAT.Rd
d0b59297263c8fdccec6ae4a5d9ff853 *man/init_famSKATRC.Rd
52fbe3c238684472503a162aecc62363 *man/init_pedgene.Rd
bbdc9b340b8ea31c6b559285b225a0db *man/mkAlleles.Rd
ef13b066a31475b6319f2dd9e7e7b690 *man/mkGenABELcoding.Rd
e09af05148405f1600869e058e220922 *man/mkGenABELgenotype.Rd
1b0bae975c611f86da458dcbfd310ae0 *man/mkGenABELphenotype.Rd
a5a3cced51b868a93e82c5424c7f76b9 *man/mkGenABELtfam.Rd
60d6eff76415e7ce05821b2f38e781cc *man/mkGenABELtped.Rd
b0ac5ab8efc01e7f0aa6037f6f31a8b9 *man/mkMarkers.Rd
f14faba95068476debc6f98691017258 *man/mkVCFfam.Rd
ec25306cf74e3435d516001d8d0b7382 *man/mkVCFfreq.Rd
c2e41ca0d21cb6499eb52cc0d97e1e4c *man/mkVCFhdr.Rd
6090ef1b1e8563531c346e446506a28f *man/mkVCFmap.Rd
1e5f1c71a45cdd039cc09590739515a9 *man/mkVCFpen.Rd
72d991e916fa27907073a777cb725e2f *man/mkVCFphe.Rd
cb257dc770a08c176de68c9e382bc149 *man/mk_markers_with_skip.Rd
2b14148e8ba6fd0f92061c03b5ec1704 *man/mk_unified_genotype_table.Rd
e996ce6695439488af5e2233c54bd3f1 *man/mkfam.Rd
3a19935544616583c1c97f9206ac8a50 *man/mkphenotype.Rd
b0ba8083808657e3b013ad01cdca3667 *man/read.Mega2DB.Rd
4ae9825b1b2ed08ba345cd19668d8b39 *man/resetMega2ENV.Rd
6bf3d375a8ff16183696f4adf372c735 *man/setAnnotations.Rd
6f2c267d91eb2963e161daf395d59df2 *man/setRanges.Rd
fb6719de9f00838e5ba4305d8cc47dbd *man/setfam.Rd
8b912455ca4e719d18d1d5853e1cb8b3 *man/showMapNames.Rd
5fb421404240aee4efd0b54b4164c790 *man/showMega2ENV.Rd
5e05c70f6968b45ec264e0c6f851a89c *man/showPhenoNames.Rd
6b76b5bbedd7dc197914bd53e3468be8 *man/uniqueFamMember.Rd
a40689ecc395b3eec4d296151a0a854a *man/where_mega2rtutorial_data.Rd
180d9bb9f2d771eee6075d47759a7e4a *src/RcppExports.cpp
1035a0330b248674e86d8edb2825b8d1 *src/getgenotypes.cpp
b0a6f8ced0c06e355f581d2a0c56b0bb *vignettes/mega2rtutorial.Rmd
