87e78108a6dcc9acf100b9a08fe0073f *DESCRIPTION
64d744805416487dd11dd449d1c363f0 *NAMESPACE
ea062e00497f1b1e3f4ae6f6b785c39f *NEWS
da8a4a8080afb795f763a58d11bbbc76 *R/MPAgenomics-package.R
7728fbbacf61643dd8ef07d0863a43d8 *R/SNPselection.R
128574a536c9b2c0f9c83b7fde2cc717 *R/aromafunctions.R
c9e11c5a701f8c048cc88e5af0784346 *R/bivariateSignal.R
583870afaa54bd26f0fa9dd721370778 *R/cghcall.R
c450109ba23eeece0a6008307e77d1b3 *R/cghcall_preprocess.R
8384e93e9b42525be3fe36c6bea1ab49 *R/cghcall_private.R
711e2dbd3a4f0eb81c2f17a8183e8264 *R/cghseg.R
a27a4865a5f95f9f768421cea74ce657 *R/createAromaArchitecture.R
bd27819381f1088fcfe77b4a2058419b *R/expandcghcall.R
5847d366aa1885ef7bbba96b78ff15e2 *R/findPlateau.R
cac5388d034926c1df5e798bdac9fe98 *R/genotypeCalls.R
e6f8a431d6e91707d9855dce35349055 *R/getCNSignal.R
bba0147e9bbad315665e90b525da1f6b *R/getFracBSignal.R
a6df2d7f5ae940e23e57008b01745df6 *R/getGenotypeCalls.R
e27938720e7b8c7a01996e55b3fa6059 *R/getSymFracBsignal.R
d28d06eaae14c8862a88481f982c77c6 *R/pelt.R
626b738260ae655934fe11b8beb2663c *R/segCalling.R
c50c177af375b99bcda15a374b74a9aa *R/segFracB.R
71dd8ce064c76192e9e51ca9059e3895 *R/signalPreprocess.R
48c6ad7af09a81b53402bfb1dc06b831 *R/tumorboost.R
07917d55f74b2169e696d7e90ac38ef0 *build/vignette.rds
d179139cd5d8414a538a6bb34b6155f7 *inst/CITATION
a5e3fdf63ae296d0ff10fdfbcc2f143c *inst/doc/MPAgenomics.R
387678b10bd23a417bf6e621b7a0edd8 *inst/doc/MPAgenomics.Rnw
05f35a620f10aa164bb09cbf5b7f51cf *inst/doc/MPAgenomics.pdf
4d08e3b554181956c9a4c36b618ca82d *man/CNAobjectToCGHcallObject.Rd
62579fbcf7d98453974753e3ef5f8253 *man/HDlarsbivariate.Rd
a0fa17cd686fea0b796f3140784cb007 *man/MPAgenomics-package.Rd
d6fbd909a2cc868cc8b6b762ee742b61 *man/SignalNormalization.Rd
5cca2d5b1483bb0d90daef2aa7bfc080 *man/addChipType.Rd
993c3fedfd47c46613dc1f1a03f35537 *man/addData.Rd
ef660d75161f6d1baaf2a493bf517a47 *man/callingObject.Rd
b2029f8b13f91d9bfe08dbe9a977f895 *man/callingProcess.Rd
2d7050876cd4c1d7e0a3168f636f9d30 *man/cnSegCallingProcess.Rd
d99916e5b658ce1c73407b52ab62c548 *man/createArchitecture.Rd
f278fc77ae2fa9732a7e76e3cbc97b3f *man/createEmptyArchitecture.Rd
42b36e3054449107c320cb2b28b6c094 *man/filterSeg.Rd
6853ec0a9eed7c09ce46ed590d7ee2e0 *man/findPlateau.Rd
42534791413d5a79fb87a905950f23a8 *man/getCopyNumberSignal.Rd
e8658bdcf26984d692b34f18ba95a5b8 *man/getFracBSignal.Rd
f541e02a30a8e218e277151c97400ade *man/getGenotypeCalls.Rd
718057571100f3cf9700c0c4c477bfbf *man/getListOfFiles.Rd
7c974c0a030d45b11289f945117f156a *man/getSymFracBSignal.Rd
0240ddf52eee490976d55d70d0288750 *man/markerSelection.Rd
6a29e465f01f4129f486355607d067ba *man/segFracBSignal.Rd
ff1de3bbeb755f714b58ab5ddde53f9d *man/segmentation.Rd
36e6679ad117eea16205495ace1e9557 *man/segmentationAroma.Rd
7f57221cf88d408f0f381ab722ea6b06 *man/segmentationObject.Rd
a90ba8b2f968d55e4b1be0a319e7a3de *man/signalPreProcess.Rd
0ccdfaa5d207dfbe1ba568839624e864 *man/symmetrizeFracB.Rd
26b3b130445510e2cf1246394241c04a *man/variableSelection.Rd
387678b10bd23a417bf6e621b7a0edd8 *vignettes/MPAgenomics.Rnw
f3c9aa391fac0c838eafee4988af452d *vignettes/MPAgenomics.bib
182881667e0c07d7cc2e22b5b1c83871 *vignettes/fig/callsoutput.png
9d00963850d9d157fedba02765f0e590 *vignettes/fig/callsoutput2.png
73db11cdf121f4b964d5b0acc0d3fbce *vignettes/fig/chipFiles2.png
96153a5134a89bbd49b9e09bde747f15 *vignettes/fig/classifplateau3.png
d294ed485640f19eb8256ccf801c0f83 *vignettes/fig/cvcourbe.png
10542bc868aa936a9a506ad19a97936d *vignettes/fig/dataFiles.png
acf8e19a47b663c58e9f3614cff4018e *vignettes/fig/dataFilesSingle2.png
c32b0aee4464f3b78ca782957073b5b9 *vignettes/fig/dataResponse.png
c4c4e425365185dcdcdf47622abb530d *vignettes/fig/decdata1.png
432c465a6f00a44d714cfb1c4cb8c150 *vignettes/fig/falsesel.png
cd7ef9c041cc5d4796f701dff7ae6af1 *vignettes/fig/fracB.png
1934b3c0cb5304284335b0e01912085f *vignettes/fig/freqdata1.png
0c1d006d73eb384baa91ac0d4cd7a1bf *vignettes/fig/matrixlabel.png
05a40458dae454eee960cc12a39a3ea3 *vignettes/fig/normalTumorArray.png
513c6d5fa918b0d3e4acd155440a50d9 *vignettes/fig/normalTumorArrayExample.png
fa50566a2bf234105ec8c699eb968d4e *vignettes/fig/normalTumorArrayExample2.png
5ace225dac077cd94fadc061e809ecec *vignettes/fig/outbedpelt.png
eb1745ffc49966fcd22bf01b221ccfcf *vignettes/fig/outpelt2.png
c35830e6cfe2ce3f453c770dd419953f *vignettes/fig/plateau.png
d87642cc4e07a9a25dead418a35b01a5 *vignettes/fig/plot1.png
feb0e3f64e5ae8afadfab6ab0825c1c4 *vignettes/fig/plot2.png
70051ff6ae6b02f150ce7c3bcdd9192a *vignettes/fig/plot3.png
6e87930b7351311f141a4e809884e742 *vignettes/fig/plot4.png
fdf92787f895cd2e2f6386386540b496 *vignettes/fig/segapresfiltre2.png
e143167d28cccf48040811d67769eb73 *vignettes/fig/segdata1.png
21f644a66b74266b03fc8177ca657adc *vignettes/fig/slopeheuristic.png
d92308d0b31b3684b4b45a1640f2ab3e *vignettes/fig/snpselectres.png
44042cd89eff9945b3c8155aad7babe6 *vignettes/fig/symFracB.png
38d2932c07358192bb0b6c24b8d39ba5 *vignettes/fig/truesel.png
