Package: MPAgenomics
Type: Package
Title: Multi-Patient Analysis of Genomic Markers
Version: 1.1.0
Date: 2014-07-23
Author: Quentin Grimonprez with contributions from Guillemette Marot and Samuel
    Blanck. Some functions use code created by Sjoerd Vosse, Mark van de Wiel,
    Pierre Neuvial, Henrik Bengtsson.
Maintainer: Samuel Blanck <samuel.blanck@inria.fr>
Description: MPAgenomics provides functions to preprocess and analyze genomic
    data. It provides wrappers from commonly used packages to streamline their
    repeated manipulation, offering an easy-to-use pipeline.
    The segmentation of successive multiple profiles is performed with an
    automatic choice of parameters involved in the wrapped packages.
    Considering multiple profiles in the same time, MPAgenomics wraps
    efficient penalized regression methods to select relevant markers
    associated with a given outcome.
License: GPL (>= 2)
Copyright: Inria 2012-2014.
Imports: R.utils,changepoint(>= 1.1),glmnet,cghseg
Suggests: HDPenReg,CGHcall,aroma.affymetrix,aroma.cn,snowfall
Packaged: 2014-07-23 12:43:12 UTC; sblanck
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-07-23 15:24:28
