b3e7759a6b7c8ec3540f8f515800d98f *DESCRIPTION
66b0ab874bb833d11f2507dc365f8b0a *NAMESPACE
acd3989d06512abb1d0bfbe28ba03380 *NEWS.md
9216ad0e55b2825166553c3aed7775dd *R/MIC-package.R
88769cd1044fd3d0cf1d81d2c19dd8ea *R/RcppExports.R
a280bbaf3d7e58c8fc4f9e93dca19666 *R/cv.R
69a74928485ee4e3120284ae44bf12fd *R/data.R
e4a1fdb3e091c9d93769005d51b9113d *R/data_converters.R
89cff3fe8d157b9534c9a75e77d57155 *R/kmer_batch.R
c8c7c4afb094aa89064460050cd5c7ac *R/meta_data.R
86bd6c33ba9bee071579a8d3bb0bd203 *R/patric.R
1ef9b39777299ceeb342929877886982 *R/sysdata.rda
79890580cfc373f76ddc4334af4c2e13 *README.md
aa5e5a2cbfaea3d9b6cdbe378ac48cee *build/partial.rdb
9c83dbf4ff7209b84e0f89a77814ea68 *data/ecoffs.rda
46552fd7d53eaecc165fa5311933029e *data/example_mics.rda
02b57bed90b88ddd112654e6c613fabc *inst/scripts/genomes_to_kmers.R
892ce8116b681165030874c043d729ad *inst/scripts/pull_PATRIC_genomes.R
5cc4c3a3d17697e24e171fc1354dfb2a *man/MIC-package.Rd
21204b3832dc81a3299fb320e5b07e57 *man/bias.Rd
859d0bfb566eeeeb1569c66045185e52 *man/clean_raw_mic.Rd
8a1273a5181de8f5ef2a5fb8efdd93f9 *man/combined_file_system.Rd
a011569b9254597772fd8b19b2b816b0 *man/compare_mic.Rd
c530983d182dc1660ac363e554345fc9 *man/compare_sir.Rd
a9cf865162299d19f3a32a6826d9cad8 *man/download_patric_db.Rd
8d0f0ac5ffcfe19cac25f8d74dd762d8 *man/ecoffs.Rd
194d097e97dd7004ac486b03a341cc82 *man/essential_agreement.Rd
11becda6f5040e925d97161f8bf740b2 *man/example_mics.Rd
e426bcc1637cabf24efcd4d8bae827a8 *man/figures/README-fig-val-ea-1.png
79f2d9ef84e43c962594cdd5a4fb8f25 *man/figures/README-unnamed-chunk-8-1.png
eba93965f818d2dd29b0486d6e65f320 *man/figures/README-unnamed-chunk-9-1.png
391f696f961e28914508628a7af31b74 *man/figures/lifecycle-deprecated.svg
691b1eb2aec9e1bec96b79d11ba5e631 *man/figures/lifecycle-experimental.svg
ed42e3fbd7cc30bc6ca8fa9b658e24a8 *man/figures/lifecycle-stable.svg
bf2f1ad432ecccee3400afe533404113 *man/figures/lifecycle-superseded.svg
adc91e1c9a222aaac928ec887443aa39 *man/fill_dilution_levels.Rd
fa0a479063eb16996829d51cba666bf1 *man/force_mic.Rd
e6a1622c4ca287712aaba969085d31b1 *man/genome_to_libsvm.Rd
41c6b603dfe8577b1d26bfa5e067d901 *man/genomes_to_kmer_libsvm.Rd
f31ec1fdda159ff7a5876041d1d7b231 *man/get_mic.Rd
6302103e08a001c0da39447ce4f4dbf4 *man/kmers.Rd
5b190da4e71226be27d80ebcb4c6a7a5 *man/load_patric_db.Rd
c696297ee57b87606f95411dfdc855f1 *man/mic_censor.Rd
1d4f0c1d3dd33366d4bf5e81c4fb81ab *man/mic_r_breakpoint.Rd
acc49610b91c114f594cc3f1f1e62506 *man/mic_range.Rd
4cc7d03c895949830b683043b8cb03e0 *man/mic_s_breakpoint.Rd
78a04a6a730075be0780edf7882a0d30 *man/mic_uncensor.Rd
50f05d52bac546fb9dc369e29ab01b7b *man/move_files.Rd
5e3c6d884adcc30ac98acfa3ab152215 *man/plot.mic_validation.Rd
6a9749a343b86da57de8b376ec1187f5 *man/print.mic_validation.Rd
eab18c030109ec49cdc1850e571f3835 *man/print.mic_validation_summary.Rd
f8972253775379d10783c1bed53ddc3d *man/pull_PATRIC_genomes.Rd
9f8a6d28d6c2fa4f9718ea1f112a57ae *man/qc_in_range.Rd
4db84caedb81f1d09e69d6f7366a678f *man/qc_on_target.Rd
c04e1e75c1d775439d7ae094ca585123 *man/replace_multiple_slashes.Rd
729e523130e5c64c4f833518b2c7d301 *man/reverse_complement.Rd
83a3dac40ec7c0efee01aa7afe88f346 *man/split_and_combine_files.Rd
27cfb3743a31ec603bd9639e07e35c19 *man/squeezed_index_to_str.Rd
7f5dc03c36637e1d8b1e583f0c8a0c98 *man/squeezed_mers.Rd
871f6859f56447eef5326cdf8d519734 *man/standardise_mic.Rd
3b5991db0c3eefe50e526ee1e64e293e *man/summary.mic_validation.Rd
aae3dd32ced290ed35d1a8652a89ba9c *man/table.Rd
772c354762419b822ed8358b4487bf63 *man/tidy_patric_meta_data.Rd
47c1cf41914a81aabd75cd73a5037ede *man/train_test_filesystem.Rd
5067a0aec4c970f352d7043eeb18fb9b *man/unsqueezed_index_to_str.Rd
32bbcff85bf3d887263f1cabd3793ace *man/unsqueezed_mers.Rd
41c44a13892eadd1af2bc4c0ab9ede14 *man/xgb.cv.lowmem.Rd
970c92d276b71fcb4e15510df63da187 *src/RcppExports.cpp
f8dd8b1748c3458fc7ba5e1cacc237f1 *src/kmers.cpp
a3b268c26686fbe4e1b282d271b2093c *tests/testthat.R
18ca29a8328544427cf433c86290f523 *tests/testthat/fixtures/genomes/001.fna
993c7005dfed26e1e7492890bcf0102d *tests/testthat/fixtures/genomes/002.fna
791d9222f803b9ffe6989703dae11fdb *tests/testthat/fixtures/genomes/003.fna
f7a29166773278d60e1bc4524a885733 *tests/testthat/fixtures/genomes/004.fna
0def32aeb0d830f12c3f2e12a1e7e47f *tests/testthat/fixtures/genomes/005.fna
90f7ce692116aa767a1a9a34d765f254 *tests/testthat/fixtures/genomes/006.fna
a5f72c69d6ff4f69aa9f7774ad3c8371 *tests/testthat/fixtures/genomes_libsvm/001.txt
41319003dabd20a0c1d5c77dd5a162a2 *tests/testthat/fixtures/genomes_libsvm/002.txt
a39ade562287e58f0c9d03b8feb6caf2 *tests/testthat/fixtures/genomes_libsvm/003.txt
b5e044c2de5eb5b7a80f00aa07a80c7e *tests/testthat/fixtures/genomes_libsvm/004.txt
73559eb837a8b0a9396e2266c62cf6ed *tests/testthat/fixtures/test_patric_db.txt
bd9d2d41c364a2a552456bc2adda6455 *tests/testthat/test-cv.R
32455ae507a2fa32f9c17760ea3d399e *tests/testthat/test-data_converters.R
7652eba58ee65b25f8f79d8b243fabd9 *tests/testthat/test-kmer_batch.R
ca34b7c24ab1a6a16b43f99fdbe527b0 *tests/testthat/test-kmers.R
1005c893e51909e83090b601bce36bf5 *tests/testthat/test-meta_data.R
a989892454215342e68d17f1acb0f67b *tests/testthat/test-patric.R
