b70cb35bd39c58fc6b8e9abd00d3aeb2 *DESCRIPTION
a3bdadf8a08edc6c8a290dc53c7d1c57 *LICENSE
a1430c050d98bb87dd8799b8a31185d2 *NAMESPACE
12b35073700a6991adbe4df9cd800594 *NEWS.md
40bf4e6df7bd091e2528451b9c5f8c91 *R/BootKmeans_func_20210910.R
5ae9b38abbec4771a37bbc777ba7967b *R/ClusterMatch_func_20210910.R
f5dc5391d54c5a6d0b3c128d106b5ca7 *R/CreateFas_func_20170924.R
331bdf4acdf56a99336e9c91c1ab89f0 *R/CreateHpltOccTable_func_20221010.R
3d382efad575f212ec707558b678ddd1 *R/CreateSamplesFas_func_20170924.R
089068a9dd51ed274b9a5bb5cb45602d *R/DistCalc_func_20221007.R
279bc1bed9b139569bdde5bb3f41a5d9 *R/GetHpltStats_func_20200915.R
ac72b0c5379f973cab89703d757a1326 *R/GetHpltTable_func_20200915.R
c693fe491d32738a8f3d542c04b0a2ba *R/GetReplStats_func_20200914.R
0a984aa442d334c9e038962bb0bd248c *R/GetReplTable_func_20200914.R
c188593a401143a3b3aa0c68e6d8e04b *R/HpltFind_func_20220802.R
a3828880307df05f810b75ca19ffe981 *R/HpltMatch_func_20221014.R
851087a26701404ece79d0060bd51748 *R/NestTablesXL_func_20221012.R
244f14ae3db2c4bffb12fa1bd8324b52 *R/PapaDiv_func_20200915.R
543e0052bdd54338d7258aaffbb1cdda *R/ReplMatch_func_20221007.R
d4e0bec7423ab4eeea01b801ec376f14 *R/hplt_occurrence_matrix.R
4b18bd2fb645019696234c6526f5e7a2 *R/k_summary_table.R
229c3f003a8af637e9ba6b74ef368e85 *R/nest_table.R
238b6d2eb4167dbf2e79429f2b6c6782 *R/parents_table.R
3bd133932ecd607b6e51e58bee4b52c2 *R/replicates_table.R
7d626fbfdf3807df677649ab9d668fc3 *R/sequence_table.R
5720a79564fc7ebb3d537d449ebf56fc *R/sequence_table_fas.R
38bc46317b4553f25a753bcc3b5c1530 *R/sequence_table_hplt.R
48ac98881d7bf956c60de3dd377742e2 *R/sequence_table_repl.R
c779d42b4f7a40800dbe703c622c065e *R/z1_matrix.R
4815a1055aebdf1974bf642555390fa3 *R/z2_matrix.R
355c119f41caa6c9af049a8877365d07 *R/z3_matrix.R
67df4e9d7d8de4c68311c35dfb93fcfa *R/z4_matrix.R
2d660a5dadc63982457c8a1dffe7daf0 *R/z5_matrix.R
ec3254399f22110f35b9f7ec24cb2d19 *README.md
e601212f6429beaba306a85e8ff6a26d *data/hplt_occurrence_matrix.rda
f62ac9e6d3666bbf40e6c9f3d0631bf3 *data/k_summary_table.rda
b61975620b028c53e032605690c83d8d *data/nest_table.rda
8688a1db4a2cbc09fe57327798733504 *data/parents_table.rda
480fe83a822ecc01ef093405e675d4c4 *data/replicates_table.rda
82ff790f465556fa86b37d4d3f23719b *data/sequence_table.rda
afbacaef98d462db562cab89321539fc *data/sequence_table_fas.rda
3cac764470b777e425e6a52dc54adb8c *data/sequence_table_hplt.rda
9fbfc1dcade8e5177ecb3b3970ed73c7 *data/sequence_table_repl.rda
ac109af3f2092c8b9490d810d88860de *data/z1_matrix.rda
e39d5fb7174f36d5ff708d9224c9c42b *data/z2_matrix.rda
974cc0c81e888fc78e26218b017729fc *data/z3_matrix.rda
b406b4097e0e1b58b2834421b8bba1b9 *data/z4_matrix.rda
648bdcf1d010814938bed5fcd6a5ac1a *data/z5_matrix.rda
c696c0a65d2ff13fecd476b3fcf03ea3 *inst/extdata/ClusterMatch/Kclusters_model_10_20210913.RData
76260a61539f05f1b3b9b2d751b1289a *inst/extdata/ClusterMatch/Kclusters_model_1_20210913.RData
e77880b0c3045d9afb0b03e36a45db53 *inst/extdata/ClusterMatch/Kclusters_model_2_20210913.RData
d1d1aea8f57a4b3f44b4fb631032a9d8 *inst/extdata/ClusterMatch/Kclusters_model_3_20210913.RData
4fe6e700d5c944012b2fb1991b5ff120 *inst/extdata/ClusterMatch/Kclusters_model_4_20210913.RData
4e076be11470072e68bd994ee858a4ad *inst/extdata/ClusterMatch/Kclusters_model_5_20210913.RData
eee22eef5d05d348f57a76d3aa626a5d *inst/extdata/ClusterMatch/Kclusters_model_6_20210913.RData
e3f1422e3615aeaf289281eecd1b80b1 *inst/extdata/ClusterMatch/Kclusters_model_7_20210913.RData
19a134ded4436a01064c8249defecd68 *inst/extdata/ClusterMatch/Kclusters_model_8_20210913.RData
8f2641873c421ed27a27948ef41cc25a *inst/extdata/ClusterMatch/Kclusters_model_9_20210913.RData
4b15e0dfd972d12e54db5b9aee4297f3 *inst/extdata/HpltFindOut/Haplotypes_nest10_20221018.Rds
0625e0b1c558c5d8ad67c9cfc552117a *inst/extdata/HpltFindOut/Haplotypes_nest1_20221018.Rds
dd30dbe23127aefcce2e9f559827efb8 *inst/extdata/HpltFindOut/Haplotypes_nest2_20221018.Rds
0f39c844876c2dbaa1817ca21540dfa0 *inst/extdata/HpltFindOut/Haplotypes_nest3_20221018.Rds
eb28ba53930f9b65ce9cf8a86ca5f029 *inst/extdata/HpltFindOut/Haplotypes_nest4_20221018.Rds
0a88e79eab30b0d0bd6e8d89da6078f0 *inst/extdata/HpltFindOut/Haplotypes_nest5_20221018.Rds
bc7cf360f030aeb4d21792a3ce0a09d2 *inst/extdata/HpltFindOut/Haplotypes_nest6_20221018.Rds
bd3009bb88308a2d704ead6a1cc838c9 *inst/extdata/HpltFindOut/Haplotypes_nest7_20221018.Rds
e4580bce249e05a34d66f3775f47d472 *inst/extdata/HpltFindOut/Haplotypes_nest8_20221018.Rds
eeb8431112a750161eddb6e499292c75 *inst/extdata/HpltFindOut/Haplotypes_nest9_20221018.Rds
7b81441f641174e60ff7f62f70c15752 *inst/extdata/ReplMatchOut/Repl_set_10_20200915.Rds
9a68d4386a82655ee961e48dcc0784dc *inst/extdata/ReplMatchOut/Repl_set_1_20200915.Rds
ecb318d569d9f1d17b1c63b2cec26835 *inst/extdata/ReplMatchOut/Repl_set_2_20200915.Rds
05ac2b308b01f5e5ec846854f3148991 *inst/extdata/ReplMatchOut/Repl_set_3_20200915.Rds
e39648a64e7fed9bb9ddab025a4ce47d *inst/extdata/ReplMatchOut/Repl_set_4_20200915.Rds
97aa947f79bfae66e58248c5319933e9 *inst/extdata/ReplMatchOut/Repl_set_5_20200915.Rds
85fba66e14c5d6a4435522704c332594 *inst/extdata/ReplMatchOut/Repl_set_6_20200915.Rds
3605c65784c0c78b65016f78075f3387 *inst/extdata/ReplMatchOut/Repl_set_7_20200915.Rds
07e8c3b3ce4be8938950c54287bd1ac9 *inst/extdata/ReplMatchOut/Repl_set_8_20200915.Rds
7250b7e328c07e0cb10720fa311ff42f *inst/extdata/ReplMatchOut/Repl_set_9_20200915.Rds
1092ae64a2d842f81af47147a3b791e9 *man/BootKmeans.Rd
81708917df2f77f4d3cf3ec14712275a *man/ClusterMatch.Rd
1ea684ffd16f6a7973a2f3e1ac32a286 *man/CreateFas.Rd
aa7fed28333b9d68e950e53d04c18f52 *man/CreateHpltOccTable.Rd
72caa8aad4234da5154f64db9360db6c *man/CreateSamplesFas.Rd
8da8e960a478419fd2cf19933cc4ad34 *man/DistCalc.Rd
ec0e0f1a0c7932e74149e7438108a8c4 *man/GetHpltStats.Rd
84be44f360950a66bf162bde3fe774c8 *man/GetHpltTable.Rd
607503f9ad7d2a93c6926760d5c17a07 *man/GetReplStats.Rd
7ee81a4d7a914b86f6d3a2133b4242f7 *man/GetReplTable.Rd
db598d0d99458410763e86c8ff096657 *man/HpltFind.Rd
2136321be420e76409232ad2044255e2 *man/HpltMatch.Rd
ff2a2b46f15569f7ca1051a9c900ad17 *man/NestTablesXL.Rd
34a4579e0ac65382e9261383d5f688ad *man/PapaDiv.Rd
7bfe0257c3a3cb94c8f5ccabf61bcfa7 *man/ReplMatch.Rd
d1da8f9ff6860f6a2d4c94fe1ad29a6b *man/hplt_occurrence_matrix.Rd
01ca8d322b0647b81ef7331ef3370cda *man/k_summary_table.Rd
105e107e7d6af49686d44bdacbdbb0b0 *man/nest_table.Rd
946c54ac38a9e17d02f0343c32d0e72b *man/parents_table.Rd
a22110713b3efebdce143fe582480567 *man/replicates_table.Rd
723c99966e8ab01a2dde29296a8fa3a1 *man/sequence_table.Rd
ab05b355404c30658e1e09ec6c558270 *man/sequence_table_fas.Rd
d089ab6dc2cde27dd6e75dbe946dfaea *man/sequence_table_hplt.Rd
cb66097f28dc43c5e9995047030bf9af *man/sequence_table_repl.Rd
7cf71adfe223ac61067a0f8726a78952 *man/z1_matrix.Rd
dcd1b23a3efb5b5ddbd6301ff6b2dd35 *man/z2_matrix.Rd
ed5a48b3769bd6761b6176b7d10474d7 *man/z3_matrix.Rd
6f8170d48a2db57c4da7e2bea8c0309d *man/z4_matrix.Rd
444f1c5cfa2f788b91a94a18309bde31 *man/z5_matrix.Rd
