7509386b4d9d02e52c5cb6f3f1f94e2d *DESCRIPTION
e40933133a3ed089222f1e4233280ced *NAMESPACE
82efc48c819a4228bd084a3f87ba2dd6 *NEWS.md
827a091295f9d4f69bc46d66a3f081ae *R/Cube-1LocusTA.R
35463b306a10a02c75ae6aac590cd960 *R/Cube-2LocusTA.R
744208933ed8585a4fd4b0f9294d75f2 *R/Cube-Auxiliary.R
3db501be21c5fc9ede560d729ddd0667 *R/Cube-CRISPR1RA.R
ffc85bbbe050a9be1b35be653ae12ede *R/Cube-CRISPR2MF.R
306b0ff0cd68656c3525d65c84cd3b05 *R/Cube-ClvR.R
8802d80b0120a2b948f028056650a578 *R/Cube-ClvR2.R
13834b6249945204358122dd41a54e79 *R/Cube-ECHACR.R
96d2e90997ff83967856406d06fdb23c *R/Cube-ECHACRX.R
0f694e38db1fd550c926ecbd90fedfff *R/Cube-KillerRescue.R
88229b6164d777e6d3e15e3d808f5e93 *R/Cube-MEDEA.R
61cb08a2f5a161e5d1c0b50caeb8c11c *R/Cube-RIDL.R
2bca88808b6655ab582bd765a697f4bb *R/Cube-RecTrans.R
684e68e2f617652e6974f87ee260fac2 *R/Cube-SMendelian.R
8eec04ff1884183ffdd10a4db19f7f97 *R/Cube-SplitDrive.R
80145f0942f5847c93d64538343940ce *R/Cube-Wolbachia.R
6459386856d3c7f64eda1aaac2e67434 *R/Cube-tGD.R
1f339f000b6931e2bf002877cb6d987d *R/Cube-tGDX.R
4e46ea86905af0126d374c7017092e46 *R/MGDrivE-Auxiliary.R
06d519cfb5bad8e010b72c201a48308f *R/MGDrivE-Graphics.R
259808356c383ffe7c76d2e2cb5a7f58 *R/MGDrivE-Releases.R
98f21cec46579be867b02f7c5d6c3b5a *R/MGDrivE-Setup.R
10e28a65b5c6406ee0f7b480c3cf0aed *R/MGDrivE.R
7cf18ac0f4a29b14247034c80a222d88 *R/Network-Class.R
5c96a8ef404dc6be43f8382f1b16d76b *R/Network-Migration.R
695b7ab0942f42fb03297cccb227d148 *R/Network-Parameters.R
b9ee96f965336b0ab66cfd3edc00b9b1 *R/Network-Simulation.R
fb1324f7f7d54b5c92beb3b32d425cdd *R/Patch-Class.R
a5fa0ca80c809d419254739479fc3683 *R/Patch-Methods.R
54bdf88170f2a1de8e5d7150c65c998c *R/Patch-Migration.R
9cd72892a3d28603ed0679e12a015b45 *R/Patch-Simulation.R
7470a95bcfbb41bc7f9b0ff52903c3f9 *R/RcppExports.R
baf2a63027e7d784a2e64c5910441c7c *R/data.R
6a4b18fbbfd73a8a9b08e43f62a8ce44 *R/zzz.R
8ee715c945e4d12f8521d268411ae0e2 *README.md
71f0b9587e45b45d1cf84a3ec98ead02 *build/partial.rdb
533bdbd0a2e9f7dec2fb29764c65b1c6 *build/vignette.rds
39228ae9b06b3c1ae7f9a5c836e8634a *data/kernels.rda
749d2b032145ed3fbf34c79f73855af3 *data/moveMatAll2.rda
d77fe8fb07a734c26150bec0635b3aec *data/moveMatCascade3.rda
036eca9d2e5c64ac41f990e57728e81d *data/moveMatDiag.rda
b89038126ded89c387595e7ac13e228b *data/moveMatDiagOneCity.rda
181924774adf2d483b6f166ae67cae3f *data/moveMatDie.rda
f08970e2781c874db1dd53c1d7d8c054 *data/moveMatIndependent3.rda
7a7fd0b0d992edfed21df5ba50a0cf3a *data/moveMatMixedSpil.rda
349374cc0d220d2ca4dd73605ed27d96 *data/moveMatTaleOfTwoCities.rda
1808f2dc519c0d94c2ab2d89ceebc4e3 *data/moveMatTriDiagonal.rda
a119ca4fda39ae73eaa7b4d71cd52463 *data/moveMatTriple.rda
40aa3600328a4bb3a75e625308bc4f5a *inst/CITATION
ad8bb7dac6c18bbda30f0baa74aa9c09 *inst/REFERENCES.bib
5a6a46fd588e24437a4d9814e40e2fc2 *inst/doc/mgdrive_examples.R
0bf77e076479fdb9ad9d0fe8c1c02b4a *inst/doc/mgdrive_examples.Rmd
7d0068df5b57f244fd5ef134c8c0add4 *inst/doc/mgdrive_examples.html
e45bae16fff61e3c97d9b33ba6116de4 *inst/doc/mgdrive_math.R
4ef037e2b84ab55100cfcdc107f07c72 *inst/doc/mgdrive_math.Rmd
e8faae3aa3e375bf0d6c5ec53caa52e9 *inst/doc/mgdrive_math.html
baca8e892fa0fa26511b77eec8886b66 *inst/doc/mgdrive_run.R
fc3c17c95380b2f89ef81573485d2b4f *inst/doc/mgdrive_run.Rmd
b644ec18359e5bac16329bca7b417b1e *inst/doc/mgdrive_run.html
03e90ac19528b0c09ee9b950c5a449c7 *man/MGDrivE-Cube.Rd
836a94b83eed38c9d426f9022b401bff *man/MGDrivE-Model.Rd
5b3f6ae4c77463f1407d2bbff17d988a *man/MGDrivE.Rd
657976b9aefa0234cd1432b37d8e2e55 *man/Network.Rd
6a583a0d6c71f62820e91112a439c575 *man/Patch.Rd
e0840642ad257bd2d6c3a31193697d99 *man/aggregateFemales.Rd
bea3c66978dfac02be1a1269a63f13e0 *man/aggregateOutput.Rd
48df9b4b9057624a0953ae595ccbd9a6 *man/basicBatchMigration.Rd
2b76db92a0daf002099804295a1f9406 *man/basicRepeatedReleases.Rd
e62e01e7014c807351f1b6c547c0a968 *man/calcAquaticStageSurvivalProbability.Rd
86b8be7d988bc28843a5f4f4e3d58db1 *man/calcAverageGenerationTime.Rd
7cb960815241864eb29285f0683f02b8 *man/calcCos.Rd
4d3eff64b11f5ab25a5efbb44eeceb1e *man/calcDensityDependentDeathRate.Rd
afe3a1fd75b0cf99fff9953f11401766 *man/calcExpKernel.Rd
4e119d26e77fcec3182f1ccc92076c6b *man/calcGammaKernel.Rd
273df8f11461612a366372fafe2df088 *man/calcHaversine.Rd
46bb4c17d395cb0c842820697c65bfef *man/calcHurdleExpKernel.Rd
76a2249c23c5b5106fbce26c63d3fb4e *man/calcLarvalDist.Rd
5dc6f4980d327bfc2f68de22bad9aebc *man/calcLarvalPopEquilibrium.Rd
d1240e98fa1254cc8a5f5dfb7404b689 *man/calcLarvalStageMortalityRate.Rd
408e23f4e29d71e8b0209c0812254c81 *man/calcLognormalKernel.Rd
23fbc27d2ba8ee63c3d7b9f1297d6063 *man/calcOmega.Rd
d817df88fe748a04226be29127ea75b4 *man/calcPopulationGrowthRate.Rd
d6d71fe02ba199208fd9cb235c755a83 *man/calcQuantiles.Rd
12e6bbfdc7b80d794bbb1b6ea5df88ee *man/calcVinEll.Rd
32539e7dc4a9945a86d82041c7e83c66 *man/calcVinSph.Rd
4311ca0c02ea4158f3cade053d75f093 *man/calcZeroInflation.Rd
5f1305a0685855d239fc43d182c4cda2 *man/cube2csv.Rd
fd470306f98d6d7f48931c169751a4bb *man/cubeClvR.Rd
463611e26771e4e98c6606ed58f16ca0 *man/cubeClvR2.Rd
1e2cb1a970af413d03a4b812f966fbe0 *man/cubeECHACR.Rd
688e243c820674d3f2319f50549219c6 *man/cubeECHACRX.Rd
a3b17f0f16041e9422e44b9bb88aab4b *man/cubeHoming1RA.Rd
9d9c21736e9cb80f6da4901954cd55af *man/cubeHomingDrive.Rd
63d36f1371c4514d93b122e3032cbe99 *man/cubeKillerRescue.Rd
1c9d561b0984fd37a7068311d681ad95 *man/cubeMEDEA.Rd
47e64db1219bc6300fa5a739a4ad4571 *man/cubeMendelian.Rd
eb5c6e38506f24ce6d02e1b297dbbdaf *man/cubeModifiers.Rd
83906a7279dbfb9490976c6cf5d1f846 *man/cubeOneLocusTA.Rd
b111f039c6ef3b6e1571bd23bd719370 *man/cubeRIDL.Rd
5a8e0d42fe2054e76a868348fdf6153a *man/cubeReciprocalTranslocations.Rd
d113b129a0e1e6e18d3d15b492479d51 *man/cubeSplitDrive.Rd
138ace6391cc43f5a3ccfd67014d74cf *man/cubeTGD.Rd
1204035159d9d8db73ebd529b6cf4fdb *man/cubeTGDX.Rd
ebef169adf9be0ff1b9ffc9377429d65 *man/cubeTwoLocusTA.Rd
41069a93c625c74dfcfa30064d5b162b *man/cubeWolbachia.Rd
db7df5c533e47fdede3075a1eb5cda6f *man/eraseDirectory.Rd
7c942c13307ffdc1d5d95cfc1d13adc7 *man/generateReleaseVector.Rd
229d6ba4dac971a31bf1e2632066f083 *man/get_alpha_Network.Rd
05fd67838cb51c2d8066cf9bc38da494 *man/get_beta_Network.Rd
8df2c399a6fc54096c0bdd48aabbd160 *man/get_conF_Network.Rd
3b919d2feececc290629c6c697f27581 *man/get_conM_Network.Rd
2d3a8a3164623909c93c98123bb7c7f1 *man/get_drivecubeindex_Network.Rd
e32742f360b7c1951cbc9782c79b50bc *man/get_eta_Network.Rd
5d0e57f067f49b8cf48d831e7967e7fe *man/get_femalePop_Patch.Rd
bc1ad18f21333aee6687aeb3812f2005 *man/get_genotypesID_Network.Rd
ee0e0300bd587a9ffa6bad6a75a38f73 *man/get_genotypesN_Network.Rd
31e87ea2bd3724cc7a4ed830abc54812 *man/get_malePop_Patch.Rd
e6e1962b80fe05dff64c29119aa73ca3 *man/get_muAd_Network.Rd
00f81447836a2e7236656ca507866661 *man/get_muAq_Network.Rd
4ff17d5bcd08cf3b0f26cd487830af86 *man/get_nPatch_Network.Rd
61f43f97b90fd782b83afcc42a54c8fa *man/get_omega_Network.Rd
1d845da5707ed7697644036b891491f6 *man/get_patchReleases_Network.Rd
2d603040a92c10985e11a1bd50e997cb *man/get_phi_Network.Rd
1dc62ddf81988ea9bf478b01b1d6efaa *man/get_s_Network.Rd
3e384144d47284be10499fe9a80569e5 *man/get_tNow_Network.Rd
3de89920431a170c4870cffc26598ee4 *man/get_tau_Network.Rd
4434569714330416aa7ab97fea81db7d *man/get_timeAq_Network.Rd
0378c3c9c1f96cf85efd34458866e075 *man/get_xiF_Network.Rd
42c8fbff52dc578ebb33aef70870b252 *man/get_xiM_Network.Rd
627b714634c11068856a84af5ae16a79 *man/ggColUtility.Rd
b53c88beb6610d0d81556e5aa4875530 *man/kernels.Rd
cab80d989a77cac8ecf1d4d8284e6814 *man/moveMatAll2.Rd
fc2cb9678f67279539632e3cc41c57d9 *man/moveMatCascade3.Rd
b167e969239eab9d2660f7a9c7188ea3 *man/moveMatDiag.Rd
15a1adc60244a3a8157e32d3e4928dca *man/moveMatDiagOneCity.Rd
75156df4e9e122e5ffcee3768d63db97 *man/moveMatDie.Rd
4ad848ce044d4c93be49a9994793dd07 *man/moveMatIndependent3.Rd
e4b294548eac94f1003d196b11bba724 *man/moveMatMixedSpil.Rd
f6c8613fb29d186fee2229a63aa2a5d6 *man/moveMatTaleOfTwoCities.Rd
d91755e962c3c05e55da7e19cdea321b *man/moveMatTriDiagonal.Rd
3029ec7c190aa33008cadbb4ed168555 *man/moveMatTriple.Rd
07815ddff3ed1189cd3ec8792bcc1198 *man/multRun_Network.Rd
e22362c7edf2338da6a2c3b728db6bdb *man/normalise.Rd
69af909be112176194b60d16b04598a3 *man/oneDay_Migration_Deterministic_Network.Rd
2da96a223906acdfcc47beea82038ef0 *man/oneDay_Migration_Stochastic_Network.Rd
8814efb5c07347df05cd1eedfce91645 *man/oneDay_Network.Rd
bd8b7006af485e4ada79bc8979689a1a *man/oneDay_PopDynamics_Patch.Rd
523ae3ae0a2c5443c40f5e3c7620962a *man/oneDay_adultDeath_deterministic_Patch.Rd
610b4d16b1fd41155f16478e302d9603 *man/oneDay_adultDeath_stochastic_Patch.Rd
340b097634eb3cd680ea5e13fbcd2cb5 *man/oneDay_eggDM_deterministic_Patch.Rd
5c6a96dde5b3b2c948705ca4d118103f *man/oneDay_eggDM_stochastic_Patch.Rd
4aefc513b6f3c2d3b34ad7241a85f260 *man/oneDay_eggReleases_Patch.Rd
a832a9ed0bdc51a68baa0ffe8ed21101 *man/oneDay_initOutput_Patch.Rd
089706e9fd310bcf52a26d34c0496c7a *man/oneDay_larvaDM_deterministic_Patch.Rd
d1473977bf6f1c95c4f76583c0da8e53 *man/oneDay_larvaDM_stochastic_Patch.Rd
7f8d39c784535d05ff3680febb0fd07b *man/oneDay_mating_deterministic_Patch.Rd
dea4bbf35ec2c8d9a3ef5bc0ae1a16da *man/oneDay_mating_stochastic_Patch.Rd
658fc920e103491b1a5869482c23c4b7 *man/oneDay_migrationIn_Patch.Rd
198b2c7e55be3f5ffdc9e00ade7b90c5 *man/oneDay_oviposit_deterministic_Patch.Rd
754a5ffb4094097e6b1da6aca352b2bb *man/oneDay_oviposit_stochastic_Patch.Rd
9bf0b473338d88d3a9d66e4771b99a40 *man/oneDay_pupaDM_deterministic_Patch.Rd
49d52e76e4d7e009b10b8a3fe7c5fd57 *man/oneDay_pupaDM_stochastic_Patch.Rd
4370446c81913ee21fdcd51d20f151f5 *man/oneDay_pupation_deterministic_Patch.Rd
ca82eeff4bb3c3299428410424e1e7a0 *man/oneDay_pupation_stochastic_Patch.Rd
fb01b2d9fbacedaa247ea86bc7b246cb *man/oneDay_releases_Patch.Rd
0bec8055fd126aeecd08fc66d9c35e52 *man/oneDay_writeOutput_Patch.Rd
794b8f82aaff7c794a786c85d31963b5 *man/oneRun_Network.Rd
0aac7d50feab314794b76454d19715ea *man/parameterizeMGDrivE.Rd
23b8e52e7be6e72d141265d216c68ee1 *man/plotMGDrivEMult.Rd
2ff659473a3de390a53cdcc5b5864ee2 *man/plotMGDrivESingle.Rd
cb21dc162b40d7a09de844f9c2013184 *man/quantileC.Rd
7e1c5322032173ed756179bc588d7beb *man/rDirichlet.Rd
0a359a12e66a5103bcc0c4d82e752930 *man/reset_Network.Rd
d86e5ede037d3052be24d59d66dcc0bc *man/reset_Patch.Rd
9e4b0c77e63a90cb2682880d717473bd *man/retrieveOutput.Rd
afc4d1ec29fed23a5333bd5c5ca87f56 *man/set_NetworkPointer_Patch.Rd
5b6c1f7b3af58044032450edf3b40d3d *man/set_initialPopulation_Patch.Rd
5591f856e3595d7740cb789a683d2bad *man/set_population_deterministic_Patch.Rd
bdd87f92873796c726504c2666e820c0 *man/set_population_stochastic_Patch.Rd
27cd61185074cfabdc3a7e1fadab3980 *man/setupMGDrivE.Rd
a5102933ac4a41e4560931d87285e350 *man/splitOutput.Rd
e4e7ddb5f6cef19769a4a8128a23143d *src/MGDrivE-Auxilary.cpp
672b1736218234e9c902cb186b3213b2 *src/MGDrivE-DistanceFunctions.cpp
31ad54f96104de77349033804bbee9c5 *src/MGDrivE-Kernels.cpp
7491342a83b5337968e36a0bd5449e88 *src/RcppExports.cpp
4d8d067eaef70654f31a8c9b2471fb58 *vignettes/diagram.jpg
0bf77e076479fdb9ad9d0fe8c1c02b4a *vignettes/mgdrive_examples.Rmd
4ef037e2b84ab55100cfcdc107f07c72 *vignettes/mgdrive_math.Rmd
fc3c17c95380b2f89ef81573485d2b4f *vignettes/mgdrive_run.Rmd
