a320112b9b9156557dc9656768710ced *DESCRIPTION
6452a836f857187b854c3aa28cfbb172 *NAMESPACE
e347190bf4e5d85d998af7855eb5f356 *R/clone.R
c1be7c79088ced77154cab5d2c00ad2a *R/data.R
bef923ff37a6df19fc809a944ee08b1b *R/generate_instances.R
75046816956178224404335d7fd00bb5 *R/phylotree_class.R
4bc9e3362c2c3d88ebb056a07fa70d34 *R/tree.R
748e5f618fce7272a761ef194dfd05a4 *R/utils.R
614863224ab3b5fee6cddb25feb36470 *README.md
a0f02cebb2a2f163b5712f90c74918db *build/vignette.rds
a22a595c80606190626b7a573687a8f0 *data/B_mats.rda
4d8ce7d3b32efdee3a710577177fffa9 *data/hyperparameters.rda
6b488a4b9bc8df501301173b9ddcaf61 *data/palettes.rda
ebc387b494a5641ea432c065af21e5a0 *inst/doc/models.R
478025216f731b5620cbff583437d845 *inst/doc/models.Rmd
db910fc309943c0756e9bbb1f95c8b65 *inst/doc/models.html
7471a4817c63ba926934adb38d9544f2 *inst/doc/usage.R
64a412c6b3bb87617fd54651e5f04619 *inst/doc/usage.Rmd
af753d700d520f3bf23fa9415bc88457 *inst/doc/usage.html
cd7533656c94847cf281b42e3d531766 *inst/extdata/GeRnika.png
976c0ba98b12f93066c99d08aa864c38 *man/B_mats.Rd
c5d042997d05203855ce2ab1a2a2eeab *man/B_to_phylotree.Rd
05ad5646b85955c294f46830bbd62079 *man/Node-class.Rd
19b0798e9bc1f6e43432a7f632624ce7 *man/Phylotree-class.Rd
1aa8918022c21215b7d6046016442413 *man/add_noise.Rd
4922c1cbee3005f6a9893a73a01bdb49 *man/calc_clone_proportions.Rd
6ecbdfbfdaad21537924571623599531 *man/combine_trees.Rd
45ed756191351c2bae8309ea069ef11c *man/create_B.Rd
8c813e5fd92e566356d562e4195c2467 *man/create_U.Rd
ec47afb8d311b7344be609bdee738850 *man/create_instance.Rd
ac47dfbf8f5bfa190a4e552dfcdc0f3b *man/create_phylotree.Rd
b3462fad7a2186b9d315a86a77856e0c *man/dot-distribute_freqs.Rd
48573ca8625b4ac50e9e365cd3317be3 *man/equals.Rd
9606d37308cd535e0a545385a7bff18b *man/find_common_subtrees.Rd
a09fcaea227916fc63120723bd9e285e *man/get_clones.Rd
f921e6744d1041c9b3847380c2b72b91 *man/get_genes.Rd
72eb0cd7fc69e33136b59b18528f01b7 *man/get_parents.Rd
b83aefac7d0a249e28b398c0f8c3be53 *man/hyperparameters.Rd
34f3cc8b91c84ab4e90acd28921f55a8 *man/palettes.Rd
f0be8fea2479cad1b5358794c9134dec *man/phylotree_to_B.Rd
215d6f30f34e912e2d8127b101d7fce5 *man/phylotree_to_tree.Rd
d402822e2223a6df99a1bcfc538b162c *man/place_clones_space.Rd
da04e8eb0cb9a923a4719e941aa5761f *man/plot.Rd
d63049cf387a60109c87c5c2c4603161 *man/plot_p.Rd
82d3155094c88fbcc01954233756456f *man/plot_phylotree.Rd
8e9dd66be3cc500f1c9cc879f20fe4ba *man/plot_proportions.Rd
4c69ea97a59979eae950427b7ce9abd0 *vignettes/figs/clone_distance.png
c36c1a5d9e284fe72f4b4743aa9480f1 *vignettes/figs/model_summary_goodqual.jpg
a37fc40356c14e627971f1c44cceb320 *vignettes/figs/noisy_F_error.png
a3f60681a1c7bfd30d56f00810447425 *vignettes/figs/ternary_plots.png
664367689a89b978b8307ec2cea90016 *vignettes/figs/tumor_model_k.png
478025216f731b5620cbff583437d845 *vignettes/models.Rmd
46179146e8a4d2194d9b70f4a513dc5a *vignettes/references.bibtex
64a412c6b3bb87617fd54651e5f04619 *vignettes/usage.Rmd
