0375ad8c8c25b2d152d932c033c1c02c *DESCRIPTION
02719e1a2150464836c7701f52142e9e *NAMESPACE
8bf01a380120944b6129bf3224b480dc *R/AM.R
37bd72ded4c5ae88bff98a726715d525 *R/FPR4AM.R
786de2384479a977d552cb1720056c5d *R/GenomicRel.R
ad24efa95193b12852cbcd789674d1b2 *R/OpenGUI.R
a33ba853f89e0fdc9264a1ca5b83721a *R/RcppExports.R
7e6d90e61660c10c1cac49e2754227e2 *R/ReadMap.R
87a2d3bc21b8cfae9c4cf35cced8cfa3 *R/ReadMarker.R
9ff453cfde16d29d845209bc7ce3b84c *R/ReadPheno.R
0dfae37175c39b06bc319f0dbac2fdc2 *R/ReadZmat.R
6d68f63205120dc7527b533b4c98bdcb *R/ReshapeM.R
053e30bc19c9ef445e6dfd1dd52c5b49 *R/build_design_matrix.R
1d396642ee456e8eaf11afbd493aa9c8 *R/calcMMt.R
ad25d08f3710e883f401a08aab56a520 *R/calcVC.R
282f704221b0fba2585e4d4543297454 *R/calc_extBIC.R
a08757e33240e4ac689bebf58c39c0c0 *R/calculateH.R
125b1ef6696485516355b0616e054aba *R/calculateMMt.R
c9410e4ffcba8b05cf7ade58e6e217e0 *R/calculateMMt_sqrt_and_sqrtinv.R
e3540eaeab8f499e39feb1d2e034a5ef *R/calculateP.R
b307aaf6108474de43502ab5339429c2 *R/calculate_a_and_vara.R
661d924b61f17174a04d1689d22b63fb *R/calculate_a_and_vara_batch.R
27cabb9fa5e052d1122a45d48882405a *R/calculate_reduced_a.R
747f508c99e464be22be80acf3b58cdf *R/calculate_reduced_a_batch.R
a1c40c36755ecaf2673f98e6512445c6 *R/calculate_reduced_vara.R
6e9440b66454cfba81c99fe8f146beb7 *R/check_for_NA_in_trait.R
3bc04a6fa2898e64cf8c22a71e3ac948 *R/check_inputs.R
eac416b1b2d7c8bc20cca3d50a0b6208 *R/check_inputs_mlam.R
e4253b4d1a8b0d9aea62168ca31923b6 *R/constructX.R
9b5483c912ea01a274c87d6dcd7c2aa8 *R/create_ascii.R
ad320ad04dc03eb0236e7c96e6d9cb12 *R/doquiet.R
5d9fcc8bf335e86223b218b7e5d2b8fe *R/emma_MLE.R
6de04332e21308e91abdda38acd9a8b4 *R/emma_REMLE.R
e655781fe3299c9ece372d89c0a0bc76 *R/emma_delta_ML_LL_w_Z.R
bac68e2636157ffe496be4ec7483bfeb *R/emma_delta_ML_LL_wo_Z.R
46a8b12478f0ce4a289d07dea2ee8865 *R/emma_delta_ML_dLL_w_Z.R
69416a14961e606eddad62a79049c5f1 *R/emma_delta_REML_LL_w_Z.R
7e9ab3212232d74d7fc8450bb5e2aac6 *R/emma_delta_REML_dLL_w_Z.R
aa4437ce1975790231b3c08ab26cbc70 *R/emma_eigen_L_w_Z.R
94a43ea13d4fbbeb8839f9967dd86324 *R/emma_eigen_L_wo_Z.R
65b6a0d59eaf1618de567ae36cf6f31a *R/emma_eigen_R_w_Z.R
301cb08f92d910900f1eb70a3194c144 *R/emma_eigen_R_wo_Z.R
24d9a06a0752dc67db6cff4c3be6c05e *R/emma_misc.R
11644f89f0f0c623e00a4a6c36ec25a0 *R/extract_geno.R
364809614f4f2d447767294ee9a1c70d *R/find_qtl.R
11d0563a05c264db33c9c4b2d7b8f0b6 *R/form_results.R
15edcf78077d791a773974163555d973 *R/fullpath.R
113770461b5a01225b114f8117925afb *R/onAttach.R
270f224728157d7843d82ef15c95d425 *R/print_final.R
c5ce4d28a1bc7b4fe4a0069b457e403b *R/print_header.R
16e2494b7ed744fd836447d8889295a8 *R/print_results.R
b8b0be03fa4d22e1ee99a837cf841fdd *R/print_title.R
3e8eb45cb16e63f5e776e1a15a4570f0 *R/summary_am.R
c70ebf8026afb52ff863eaa983dde1ab *inst/extdata/Z.txt
7ace8998cb38736fa6b1881fb6ed8652 *inst/extdata/geno.ped
c030c9380094c490d3f3afc419d15980 *inst/extdata/geno.txt
6df7d6ab431e134a1c8f332053e6f289 *inst/extdata/map.txt
381616b1bc74db4c92880a0729185b3d *inst/extdata/pheno.txt
404cbe9fb87123267c94286e5ba41857 *inst/shiny_app/app.R
f1f70b900f4e32cbf0a8a27135e9e25d *inst/shiny_app/css.css
1d8b41ff9898ad114aabf6bec515c92e *inst/shiny_app/help.html
3721d46912642f6dbc0773fe61324c33 *inst/shiny_app/www/images/HomeScreen.jpg
811a4dd80ab95b030fcf998fd1dc2fab *inst/shiny_app/www/images/Zmat_banner.jpg
baa765477d5e074add45b543b5ed5143 *inst/shiny_app/www/images/analyse_banner.jpg
9cfd01244dd5d1ac4690870f17206e09 *inst/shiny_app/www/images/findings_banner.jpg
300d8c024160302a266f0a2cbe87db42 *inst/shiny_app/www/images/logo.jpg
09f9debfbaed261b36247b475212fe9a *inst/shiny_app/www/images/map_banner.jpg
57d99ba760d893bc378a4294c256bdc4 *inst/shiny_app/www/images/marker_banner.jpg
8158634e700eb29b00403d995dbb0b62 *inst/shiny_app/www/images/pheno_banner.jpg
055d9280035f910148ad727299d3515d *inst/shiny_app/www/images/plot_banner.jpg
b4a94b786bffe582cf5824950a8596f4 *inst/shiny_app/www/loading.gif
2529116b83c5b84b6d4129095e5d2327 *man/AM.Rd
0f496b2cbddd5c9423fdfd7198d6e376 *man/Eagle-package.Rd
1f819dff909d227348a517b0f93f53e9 *man/FPR4AM.Rd
a495ea9451139c608db2c5f5c82c48d7 *man/OpenGUI.Rd
6c4ed8102849071ee966382532796e70 *man/ReadMap.Rd
9609ddc20095a63400074b790e355549 *man/ReadMarker.Rd
050b6f50fe898df2627ac6fa318fe9e2 *man/ReadPheno.Rd
79c277ba62f47b74ef86931b27d172ad *man/ReadZmat.Rd
d262edbd38df86c3838a23ebff13cce2 *man/SummaryAM.Rd
52f5d9d15bf451419c09568293f73a87 *src/CreateASCIInospace.cpp
9177c3feafe6a6e3094805950a043211 *src/CreateASCIInospace_PLINK.cpp
67bb2ca24873a9725ed76b0af8eb70c9 *src/Eagle.h
eb022d6e7db19a210bf7fd23100e16b8 *src/Makevars
c745f7d2fb185c02d4da2b54f7327c1f *src/Makevars.win
4c9e183b551000fcf4fa927d6e03c4b7 *src/RcppExports.cpp
e80aa5241c4d16dbab489c1bb92412aa *src/ReadBlock.cpp
5121989c2dd7f2c51f180a0d183b9027 *src/ReshapeM_rcpp.cpp
7a90e61cc1bdd80d8cc61eec553c2a43 *src/calculateMMt_rcpp.cpp
ca2ecb633908db09b0530dceb50e2302 *src/calculate_a_and_vara_batch_rcpp.cpp
e5127572593ed7b7faede14a249e4809 *src/calculate_a_and_vara_rcpp.cpp
2f09e51139cedd92d8350b77e23e14d7 *src/calculate_reduced_a_rcpp.cpp
73e6db323679d903f185aebd22023e69 *src/createM_ASCII_rcpp.cpp
0753f0fe9ff2ac2700af1f9050307977 *src/createM_ASCII_rcpp.h
1bdeda437ea4865236f54ff1ec192eeb *src/createMt_ASCII_rcpp.cpp
6e143f1c043c81cd0b8603233b4e4c6b *src/extract_geno_rcpp.cpp
937740e85e393ff1394b19099e314ec0 *src/fasttimer.cpp
f9bb6f36ac59a0b500d73e9fa9d8cec3 *src/getNumColumns.cpp
5d894fd8802b8eda6fac5500bfd2af04 *src/getNumRows.cpp
48b25116e5fe8223464fe563431cb389 *src/getRowColumn.cpp
8ab68a6b778569e106f0469f20f037fa *src/readblock.h
55812e46999a66eebb6308ae9b2d1bd6 *src/removeColumn.cpp
21c28b10981edb63fb9a947675143433 *src/removeRow.cpp
