a9ce9e3780493371d2e93db38d6de6d8 *DESCRIPTION
5de4e7be9f50ae6794e177405456f13d *NAMESPACE
9d76b38a9d438ed5eff59f8e2f230b78 *NEWS.md
6b6791b21c67048b44817d3429ae8c67 *R/DSAIDE.R
1ed63287c1a769ba18b4a367e142bc68 *R/data.R
11dff45b085fa4366cce46a1e21c1ef2 *R/dsaidemenu.R
8bb724911d19af5b1f8a3cfc37e31006 *R/generate_documentation.R
65c2b7d6722936b78d6af495a71032e8 *R/generate_fctcall.R
24361e060d9c53318d0118e69b92041b *R/generate_ggplot.R
ca2c9fd9c7f4f8888d3cfd8664a1a24c *R/generate_plotly.R
41806161f6085faaa4a483596622ff23 *R/generate_shinyinput.R
5d731e3f2f9ae0e3d872ccdc57075bfb *R/generate_text.R
733faf0721e5e24c9790f94cd82ccd13 *R/run_model.R
71a75e847e59a14c58f39a6919db9941 *R/simulate_directtransmission_ode.R
047cbeb61ce1a196758ee450b77d810b *R/simulate_environmentaltransmission_ode.R
136a16e12c249b4b735448f5594f1185 *R/simulate_evolution_stochastic.R
d759137f3a42656288b4194561fb8607 *R/simulate_fit_flu.r
f1c950502c128b32eca7cfdd539561a0 *R/simulate_fit_noro.R
827e87595ed002698777de13d5ef8249 *R/simulate_heterogeneity_ode.R
0fb84639478685b6cff97126756e0059 *R/simulate_idcharacteristics_ode.R
00311b4c4a684f06b3a81f9acccbc50c *R/simulate_idcontrol_ode.R
588f7387b8be01468ee3e3ae5b6ee2c7 *R/simulate_idcontrolmultioutbreak_ode.R
27e6655a8fd5ffd333868e8f8b8569ed *R/simulate_idpatterns_ode.R
fd779a34039e63a5058cc5c1582e86ca *R/simulate_idsurveillance_ode.R
f3b3d1782951aaa25e56d78c8782abbd *R/simulate_maternalimmunity_ode.R
72ded787ef5e6b01c4f2bf0bfd50cc88 *R/simulate_modelexploration_sir.R
920702baa2cf46c7dd36eabe4731c275 *R/simulate_multipathogen_ode.R
b934035d78b211a39c4a942fc61b5ac1 *R/simulate_parasites_ode.R
2ca0c5d024bd56e8449ab5471a6b1050 *R/simulate_reproductivenumber1_ode.R
cc0470352529050a2d1af14f78331753 *R/simulate_reproductivenumber2_ode.R
c6135b44cca286159bae73b3ab9a1977 *R/simulate_seir_stochastic.R
054e2900860c68e04e1c16beeaed55b4 *R/simulate_sir_discrete.R
fca7e6ef563581df6a690e460a3c97f0 *R/simulate_sir_ode.R
a613d34b6c2a9b2870d7a69198cfc725 *R/simulate_sirdemographic_ode.R
0fad1981a7885b06409c394ea475aae1 *R/simulate_sirdemographic_stochastic.R
2901b966da88bb714f6b474e46db26bd *R/simulate_usanalysis_sir.R
d8bb81a7b8292d7dd0817db8520050e0 *R/simulate_vectortransmission_ode.R
a3d990779ef90f279b0d7fdd5f833033 *build/vignette.rds
0416f7fb95a115ef21abba2ffcd15fea *data/flu1918data.rda
d9c2cdbc36bd4dce815d94e4d08f7053 *data/norodata.rda
8a5c8f90efb829a197f16356b78f1025 *inst/CITATION
bb198845757394f654a5904e35e0f07b *inst/DSAIDE/app.R
006b1b231eab1f5068b7d9c7748bc66f *inst/DSAIDE/packagestyle.css
5d4799472f0d0198446482d96ba8745d *inst/DSAIDE/rsconnect/shinyapps.io/epibiouga/dsaide.dcf
21461afc88c3984f31aff9389eaef74d *inst/DSAIDE/rsconnect/shinyapps.io/handelgroup/dsaide.dcf
e593e1c0bd06bb7f10a31a6831f5739f *inst/appinformation/basicsir_documentation.Rmd
2f3b8bbbfa9d9ba5ea8e74ea5a6937d4 *inst/appinformation/basicsir_documentation.html
6d81a1f0ebe850a14b0a19fd19db4ba4 *inst/appinformation/basicsir_settings.R
c172c144a3cdf67c77c6c9f6e435bc24 *inst/appinformation/directtransmission_documentation.Rmd
ff5155003c5fdc032651643b73abf849 *inst/appinformation/directtransmission_documentation.html
47919eaf8c464c0cc4b3bef1e0f7b4ae *inst/appinformation/directtransmission_settings.R
facd28aaf8adb3d8814572c71e4b3fc7 *inst/appinformation/environmentaltransmission_documentation.Rmd
efac2bf8725fb831e104188c7ce73628 *inst/appinformation/environmentaltransmission_documentation.html
eae118a4197774707e54f682b8bc7d4a *inst/appinformation/environmentaltransmission_settings.R
341c096a52037226bf8d57a7036dec6c *inst/appinformation/evolutionarydynamics_documentation.Rmd
145c315055ddb3e2b0bd38a50c18d4aa *inst/appinformation/evolutionarydynamics_documentation.html
420e7d673ef8fe95ddd728bc4ab9a7d1 *inst/appinformation/evolutionarydynamics_settings.R
8f202946315448ffba2fe3c54d65976a *inst/appinformation/fitflu_documentation.Rmd
fbcdb36e68e1f407e00f315ce587a7a1 *inst/appinformation/fitflu_documentation.html
61d6a3704af03f1bbe1fc8768857576e *inst/appinformation/fitflu_settings.R
efac66b5d088f82d99375a2c867ef02f *inst/appinformation/fitnoro_documentation.Rmd
90f29f313cef398028f00895e844ca33 *inst/appinformation/fitnoro_documentation.html
a80d5a58a2e2661d940b02ef1e900b9d *inst/appinformation/fitnoro_settings.R
2404815075bd06a7e2a4caa2af5b4086 *inst/appinformation/hostheterogeneity_documentation.Rmd
18481a50e7c8fd84ab567518228b283f *inst/appinformation/hostheterogeneity_documentation.html
7878dafb6186cf479a9668f09464e0ab *inst/appinformation/hostheterogeneity_settings.R
4ee68a0b28ed170f47aa82b0c3c26aa5 *inst/appinformation/idcharacteristics_documentation.Rmd
5daa8fd610af6f37b8793bc5dc0e1d02 *inst/appinformation/idcharacteristics_documentation.html
d5ab70135331b41d50fcd601941022b9 *inst/appinformation/idcharacteristics_settings.R
1df56ada9c18109b8839f30440e3e1f9 *inst/appinformation/idcontrolcomplex_documentation.Rmd
2e49f7d1e81d46bd4b3d954f34f20863 *inst/appinformation/idcontrolcomplex_documentation.html
b65f56f5cf28b4ab862d80b69faa9b55 *inst/appinformation/idcontrolcomplex_settings.R
99d21ac978512c523618bc832990f203 *inst/appinformation/idcontrolmultioutbreak_documentation.Rmd
34dc6f1cbe7af59aad8be954b1c1f65a *inst/appinformation/idcontrolmultioutbreak_documentation.html
8d676359fb11880e138157f888c3ef21 *inst/appinformation/idcontrolmultioutbreak_settings.R
8e9250f9852d22bb0eb67baa1694754b *inst/appinformation/idcontrolvaccine_documentation.Rmd
6c5ed3657a060cc080a6981760731e65 *inst/appinformation/idcontrolvaccine_documentation.html
6ebee886ac6b03c1726fabb2dfe97710 *inst/appinformation/idcontrolvaccine_settings.R
1028b908d8439e381916e933c6c1a000 *inst/appinformation/idpatterns_documentation.Rmd
5e7f5f6276b03189537b5167d4b8478d *inst/appinformation/idpatterns_documentation.html
0dcfb6c4369d80b1e108021a580b79f5 *inst/appinformation/idpatterns_settings.R
bfbb7a0ef9d2ef414e404886d555169d *inst/appinformation/idsurveillance_documentation.Rmd
7f23bdbcb56528f1b7f7ab947ef63e50 *inst/appinformation/idsurveillance_documentation.html
3d78bc3cbea0640ceb759e1bcad5de60 *inst/appinformation/idsurveillance_settings.R
576e57968d7050b08b9ea4259715e6f6 *inst/appinformation/maternalimmunity_documentation.Rmd
5867643a5066f593bd80ae3d58531ebb *inst/appinformation/maternalimmunity_documentation.html
76e7602c6a42bc65e41936af5e45ca0a *inst/appinformation/maternalimmunity_settings.R
9bee0a019f7b15878f29492c5ad05e08 *inst/appinformation/modelexploration_documentation.Rmd
24370a83ccb7e705f0c652378329d654 *inst/appinformation/modelexploration_documentation.html
6479bb0a0ce337f6728a6bcec38d38e0 *inst/appinformation/modelexploration_settings.R
247cc932c5af98694f1035b6dbc257af *inst/appinformation/multipathogen_documentation.Rmd
c7fe11b16c212ce0ad311142f3ae3195 *inst/appinformation/multipathogen_documentation.html
646ad1adbdcf113de6a8fb5939c4d6f6 *inst/appinformation/multipathogen_settings.R
544b980cc758c50be8ce693a4f60a001 *inst/appinformation/parasitemodel_documentation.Rmd
a00f775c7b4002fa82d58395a5774da6 *inst/appinformation/parasitemodel_documentation.html
912fc1f4cd2988956a941064854cd76c *inst/appinformation/parasitemodel_settings.R
3137a1e3c7a09603598c7e28ea18b106 *inst/appinformation/references.bib
dc2d0910ca469a2310799b6b03525729 *inst/appinformation/reproductivenumber1_documentation.Rmd
340d33441332d1d0ce5f3ed4c05c5e34 *inst/appinformation/reproductivenumber1_documentation.html
b6ccad18dc7f4e63ba8b48e1f0f95131 *inst/appinformation/reproductivenumber1_settings.R
95214044dacdd38296af4db328c87c05 *inst/appinformation/reproductivenumber2_documentation.Rmd
af6d2f0ccd0a3af3964322cb9b9665e2 *inst/appinformation/reproductivenumber2_documentation.html
ea2915c7549240f08ef32c5c5d24a3b9 *inst/appinformation/reproductivenumber2_settings.R
9801ba790308d01004b1c2bbdbac5e15 *inst/appinformation/stochasticseir_documentation.Rmd
7dd26c824311717546fb837962a37cfb *inst/appinformation/stochasticseir_documentation.html
ba4f9d44bafafed5368f79b6fd9f65db *inst/appinformation/stochasticseir_settings.R
12c54c5ff2f56ac7e77daf4b4a262eea *inst/appinformation/stochasticsir_documentation.Rmd
8b72fa517390684d65adffb1e032fef1 *inst/appinformation/stochasticsir_documentation.html
35af1585a8b96a3cfa914e2add095597 *inst/appinformation/stochasticsir_settings.R
4129fb5b8b794ed366b6d6795a84188e *inst/appinformation/usanalysis_documentation.Rmd
5e2d7d912f03c369cb46671530801d78 *inst/appinformation/usanalysis_documentation.html
da24c447cd0b49416336677f3c656c02 *inst/appinformation/usanalysis_settings.R
33f1f494779337275662f08abcf8ad3c *inst/appinformation/vectortransmission_documentation.Rmd
d83ad01be89fe7da884888056975300e *inst/appinformation/vectortransmission_documentation.html
9b452a69db19cf8273da7a0a46bf8a66 *inst/appinformation/vectortransmission_settings.R
434033a8f0e2e6969c7cfe6473f1c397 *inst/doc/DSAIDE.R
3101aad7bc6a2714c117ba9053a8f69a *inst/doc/DSAIDE.Rmd
b6eda9b485e3e6213b80e6147afecb42 *inst/doc/DSAIDE.html
f0a6bc834e7b65fcaaf6c9e2a37488c5 *inst/docsfordevelopers/documentation.md
71a75e847e59a14c58f39a6919db9941 *inst/simulatorfunctions/simulate_directtransmission_ode.R
047cbeb61ce1a196758ee450b77d810b *inst/simulatorfunctions/simulate_environmentaltransmission_ode.R
136a16e12c249b4b735448f5594f1185 *inst/simulatorfunctions/simulate_evolution_stochastic.R
d759137f3a42656288b4194561fb8607 *inst/simulatorfunctions/simulate_fit_flu.r
f1c950502c128b32eca7cfdd539561a0 *inst/simulatorfunctions/simulate_fit_noro.R
827e87595ed002698777de13d5ef8249 *inst/simulatorfunctions/simulate_heterogeneity_ode.R
0fb84639478685b6cff97126756e0059 *inst/simulatorfunctions/simulate_idcharacteristics_ode.R
00311b4c4a684f06b3a81f9acccbc50c *inst/simulatorfunctions/simulate_idcontrol_ode.R
588f7387b8be01468ee3e3ae5b6ee2c7 *inst/simulatorfunctions/simulate_idcontrolmultioutbreak_ode.R
27e6655a8fd5ffd333868e8f8b8569ed *inst/simulatorfunctions/simulate_idpatterns_ode.R
fd779a34039e63a5058cc5c1582e86ca *inst/simulatorfunctions/simulate_idsurveillance_ode.R
f3b3d1782951aaa25e56d78c8782abbd *inst/simulatorfunctions/simulate_maternalimmunity_ode.R
72ded787ef5e6b01c4f2bf0bfd50cc88 *inst/simulatorfunctions/simulate_modelexploration_sir.R
920702baa2cf46c7dd36eabe4731c275 *inst/simulatorfunctions/simulate_multipathogen_ode.R
b934035d78b211a39c4a942fc61b5ac1 *inst/simulatorfunctions/simulate_parasites_ode.R
2ca0c5d024bd56e8449ab5471a6b1050 *inst/simulatorfunctions/simulate_reproductivenumber1_ode.R
cc0470352529050a2d1af14f78331753 *inst/simulatorfunctions/simulate_reproductivenumber2_ode.R
c6135b44cca286159bae73b3ab9a1977 *inst/simulatorfunctions/simulate_seir_stochastic.R
054e2900860c68e04e1c16beeaed55b4 *inst/simulatorfunctions/simulate_sir_discrete.R
fca7e6ef563581df6a690e460a3c97f0 *inst/simulatorfunctions/simulate_sir_ode.R
a613d34b6c2a9b2870d7a69198cfc725 *inst/simulatorfunctions/simulate_sirdemographic_ode.R
0fad1981a7885b06409c394ea475aae1 *inst/simulatorfunctions/simulate_sirdemographic_stochastic.R
2901b966da88bb714f6b474e46db26bd *inst/simulatorfunctions/simulate_usanalysis_sir.R
d8bb81a7b8292d7dd0817db8520050e0 *inst/simulatorfunctions/simulate_vectortransmission_ode.R
e832a517b6d187ed75833b6d3efd3c3f *inst/simulatorfunctions/simulatorfunctions.zip
4ff6a04f6c1f9b53eebd48193bd12d00 *man/DSAIDE.Rd
4bfaa7b3011955b1bb81015883619b1e *man/dsaidemenu.Rd
f77a15c63cf4aa34089c7b999de3bf6c *man/flu1918data.Rd
9c63beddb4a3d4eee80ca8041614ef6e *man/generate_documentation.Rd
c296966e6eded7470620a6c2595249b5 *man/generate_fctcall.Rd
b4e5bfdf19792ee0b04f8bc4d133db27 *man/generate_ggplot.Rd
359cabd1444114174dce82236ffc5744 *man/generate_plotly.Rd
a5ef9e7255a6e89650d3c1cb1e78819e *man/generate_shinyinput.Rd
6d365b8ff4acc7128708788577524cf0 *man/generate_text.Rd
ec598a14c9beeab973e42cca6b49fce7 *man/norodata.Rd
67bf83680e8222d2cc1420a1c9e30ce5 *man/run_model.Rd
8aa1eebb7785ffc99351b9eb262719e2 *man/simulate_directtransmission_ode.Rd
b141a4f56b417c02f3f02bc49f95462b *man/simulate_environmentaltransmission_ode.Rd
72539fe3c57cf6145b78ece57d5c89dd *man/simulate_evolution_stochastic.Rd
966c2c48bac6e2c8643d9ac808b54723 *man/simulate_fit_flu.Rd
f80453e038186c507d6a2c70bcdff482 *man/simulate_fit_noro.Rd
71d1aeff30035b1e99d5164f32c81f79 *man/simulate_heterogeneity_ode.Rd
b36594237ff82e0a1ad8b612435bcb2b *man/simulate_idcharacteristics_ode.Rd
1d86bc1ea060a7601f81a396fb14d0ef *man/simulate_idcontrol_ode.Rd
2fc25cbcdc9f525854977b5ab05c9c13 *man/simulate_idcontrolmultioutbreak_ode.Rd
d0ef611cf9388cd899e3b2a537a331fe *man/simulate_idpatterns_ode.Rd
4dfe5d0b3c2fdc862eb82b0cf95d4cf2 *man/simulate_idsurveillance_ode.Rd
008b0e9fc79a45bd1d845c13fee7f4a6 *man/simulate_maternalimmunity_ode.Rd
9e6900b0ebe50f60d3055c4cef98efb4 *man/simulate_modelexploration_sir.Rd
4b4be87cd66155b541f719feef34e02a *man/simulate_multipathogen_ode.Rd
d0fdbde8994fbe92495ce9a6b1f17cef *man/simulate_parasites_ode.Rd
fea34e84041c711cb28d460b26df6420 *man/simulate_reproductivenumber1_ode.Rd
93998d12d936f8ff4720f92901ef30e3 *man/simulate_reproductivenumber2_ode.Rd
78dc2000ad04e8fcf4d3ed7af0eb8d6e *man/simulate_seir_stochastic.Rd
0cb8591a7f85561162a1223285d415b7 *man/simulate_sir_discrete.Rd
aba21fea95f04fd685924bfd08df1b17 *man/simulate_sir_ode.Rd
3fb0e69ee5a08cf89bc7c7a43cedbcd8 *man/simulate_sirdemographic_ode.Rd
31722acd82560f165dceb2ab2dd7f108 *man/simulate_sirdemographic_stochastic.Rd
a84f8b62fdaa38fb3e32176141d991fa *man/simulate_usanalysis_sir.Rd
d5cd5cdc1ff68be5227f6b4f86ca877d *man/simulate_vectortransmission_ode.Rd
c4f96fa6f7dc7d08f7b522c57140e45f *tests/testthat.R
7f93ab4b2f382b42190796e91b45a437 *tests/testthat/Rplots.pdf
1dbad15c206e0a4656242311da2ac531 *tests/testthat/test-fit-apps.R
a93c42653b8d0a547622f3ee9ce0358c *tests/testthat/test-generate_documentation.R
709699e1e09637f7600335b4d9ef99bb *tests/testthat/test-generate_ggplot.R
610380e910166cdab7ac5e6076619847 *tests/testthat/test-generate_plotly.R
2f74975d79bb8ca1c8ab8480fe0c265f *tests/testthat/test-generate_shinyinput.R
27213e505652f2b27a3710bc3b5b0f47 *tests/testthat/test-generate_text.R
f151d38173d7b2ace4fc584e8494dda5 *tests/testthat/test-generate_usplot.R
b77c1c212e0dc76a764c32bb01f83c91 *tests/testthat/test-modelexploration.R
3aca1b58d34e70e88b04c030acb2914f *tests/testthat/test-run_model.R
3101aad7bc6a2714c117ba9053a8f69a *vignettes/DSAIDE.Rmd
0dd4c6f8f8112fef3d245e0815a7b308 *vignettes/appexample.png
8aec4574b59fdc9e90d3950bce588f9b *vignettes/mainmenu.png
009f9092cc3e358cd8ea206a9ce8440d *vignettes/modelexample.png
6ccc2ee26740af6134014c5772ec92aa *vignettes/mysimulator.R
5652baa81dcc0366f642bff04c74917f *vignettes/vignetterefs.bib
0b113f834887b657d363a68d7dcf45d8 *vignettes/whattodoexample.png
