67d8fe956881225e923590f517a8b3f1 *DESCRIPTION
7783ed80b2ce9959629ef731f875e688 *NAMESPACE
ffde35109659e05eabf1ae9d411874e6 *NEWS.md
bf247f44a15727314b2ec1d8cd2956b1 *R/Blow_funcs.R
a774b1210764e4de2a814c206e48a95f *R/ChooseEffort.r
d653583eb3e647b3b0a0843ff3958281 *R/ChooseSelect.r
9ab0b69626e86513a58fd3450a458156 *R/DFO.R
8b602701cac0261f06e199a0d18bdaf6 *R/DLMtool-package.R
348aeafd8d9d94c4763b9cbaaf548b1b *R/DataObj.r
07613ca9eb14349fde815d79df640721 *R/DefineClasses.r
64f19a901ef849b37cd1ed9790310642 *R/Input.r
7f585376cbabb1c9b390c1670c648ee9 *R/LBSPR_MPs.r
76ce2e5f9a010edaf85062136d845d0e *R/MSEObj.r
e46969a3a940f20b4b27111404209079 *R/MiscFuns.r
68079ce496102365494f04e91570b38d *R/MiscInt.r
fdba1044a2a3d7adb6ac1d4cc2b2134c *R/Output.r
99d0283cd05ac2ae9c614a3c693d802b *R/RcppExports.R
2079322b5c0eb0a70e6874602e8d7ede *R/Replace.r
12ac8bd576f20a0e34c0ff25e072f916 *R/SS2DLM.R
94f325921f6b7b85ea9674d8c3a89121 *R/StochasticSRA.R
8fdf192d31cc1645a22421ea65b2fcc4 *R/SubOM.r
020f8c3c7ceddee588569d4181d4da96 *R/XLloadfuns.r
b60e8e09feee2cd41113ed04f974b635 *R/cpars.R
67a43a4f2b6322f2989bec74fbdd68de *R/dataObjects.r
49a82eefb45829aea506a93c2df27990 *R/iSCAM2DLM.R
ec9550d2733c6a3f46dacd1a03b3a22b *R/plotFleet.r
772609e129e21dd1cfd8a0f5d68e81aa *R/plotOM.R
2fa3219f09401ddf09e30afd2e528619 *R/plotObsImp.R
4e9f5e453e390e734492f32eeeb28200 *R/plotStock.r
f265de7787df9d9d3cc4197c28504082 *R/runMSE.r
b145c8a358b46ae37d88fadd5a34013c *R/runMSErobust.r
a396398721fb28c279d951583a4222e4 *README.md
128734a99a0ea0a5461c57d3eff1c814 *data/AJ_GOM.RData
65a232db62de78ea321b2f4b06f46764 *data/Albacore.RData
b53c8bdebff1141ef7f4022adacf1ff9 *data/Arrowtooth_Flounder_BC_DFO_iSCAM.RData
1aeab252e0b700537c14bd3623433f5c *data/Atlantic_mackerel.RData
fd51af792bf39de3dc99f6e60575c3e2 *data/Blue_shark.RData
31ada512d840f9f384249f3bec161e47 *data/Bluefin_tuna.RData
242c57dc81a30b20f9ded5125f2cba0c *data/Bluefin_tuna_WAtl.RData
e35a38961858cb01e6d7fea29a8a2e59 *data/Butterfish.RData
8ba16e23a4712ece4638a555ee251e29 *data/Canary_Rockfish_BC_DFO.RData
44b8fa5cf05f7057e139e04006c915eb *data/China_rockfish.RData
160c4d34f78827207f5e8832d442b215 *data/Cobia.RData
392dabec77154db645cead4029e36eec *data/Darnley_Bay_Char_DFO.RData
ff3354e85b90de01580373d1270415a5 *data/DecE_Dom.RData
7ed0f2f0f49277a36cbebb24805b4fd0 *data/DecE_HDom.RData
021ea9c3cdb8acf867cce24a1fc24fa3 *data/DecE_NDom.RData
8820b3a45792a5730d07b2de52445ae1 *data/Example_datafile.RData
eb61f0535d0900ffb93e574b3db330e3 *data/Feasibility.RData
c310a8faa880660979bc8f5da9d59e12 *data/Feasibility2.RData
64922e0b687f8e11d693c409c27d95d8 *data/FlatE_Dom.RData
9ff184cd4b0f78890627bfe149e78838 *data/FlatE_HDom.RData
85562092e5a31776c3a2bcf4a936b1b7 *data/FlatE_NDom.RData
d94732d5878d45fda6129382e533d5b8 *data/Generic_DecE.RData
2bd3eb54f52fb3e77570fc66b5495f80 *data/Generic_FlatE.RData
25d93d91f6c30c3a326e0a0e1c31892a *data/Generic_IncE.RData
16446a3c3ab426cda8bf952c79f0ebc9 *data/Generic_fleet.RData
527477b232b75e0705a553e9dd941e1c *data/Generic_obs.RData
c91502f7c5d98a0593d1fc53812a109c *data/Gulf_blue_tilefish.RData
eef96f0b87a17ac91e11dbd075e2ab96 *data/Herring.RData
45047a2c738c4879b955020f68c074f6 *data/Imprecise_Biased.RData
f8ecba1fb663b64a71d2588602d0842a *data/Imprecise_Unbiased.RData
0dc6689a1795dc4d9b52adc659d12ca2 *data/IncE_Dom.RData
6a9e6c3ba1502dc11c01a813cdd1b1a6 *data/IncE_HDom.RData
720ebe2c374148eb0f0e098264e44a89 *data/IncE_NDom.RData
3f225d3c0930a194fbae3f336d4511b4 *data/LAJ_GOM.RData
013197ed3083edfacbbd72d94be7b91c *data/LS_GOM.RData
0e10046f6e76418dac3a1617d39b1da3 *data/Low_Effort_Non_Target.RData
0ce26dc33221400a0746f0edd3d7c8f0 *data/Mackerel.RData
45ace08da42d45cb81586d2c417f8102 *data/Perfect_Imp.RData
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4b598255ad735f01e767062a6111bde1 *data/Precise_Biased.RData
1c71469a5885a3486c88f19675f20d97 *data/Precise_Unbiased.RData
1f116889251dfa667ad02d6431749e3a *data/RD_GOM.RData
8bd895377e27af012086466efb4d0a76 *data/Red_Snapper_GOM.RData
1eec8137c07e0c9f312e32087239ddcf *data/Red_snapper.RData
5fa9a073b95caff4a3f7a2198a409137 *data/Red_snapper_GOM_SS.RData
3879545bbf258808607c6fa0cc40de3f *data/Rockfish.RData
8ac00d9033edd922d226499c54d8a698 *data/Rougheye_Rockfish_BC.RData
47cdd0f3f4925f125e9ca26884fabc8a *data/SG_GOM.RData
b43a8709100e9f77c3f0efeded1adec2 *data/SH_GOM.RData
558d1522bafbabadef5b295439be7ee2 *data/San_Francisco_Bay_herring_California.RData
5e4ab4db6c469b5e84a36b876d12db9f *data/Simulation_1.RData
08220e5c3ab470fe08fdac0a5e742670 *data/Snapper.RData
389719e4e53518f035292579e947e34f *data/Sole.RData
c3b96663aeb288b9c0ee9b8b3a1f0026 *data/Swordfish_OM.RData
dbf74118f840006d089d406cf1611fd7 *data/Target_All_Fish.RData
047aaf65dabf0758c1ce02fb1fe587d1 *data/Targeting_Small_Fish.RData
25d0ac7bc2945f2b132e72d449fbbe9c *data/Toothfish.RData
0f7b5b79c675f8d1fd64e534218f2014 *data/WM_GOM.RData
240a7649466db2280dc3d46d54b4a480 *data/YM_GOM.RData
7a44dbd08104cff59e59e474508943d8 *data/Yellowfin_Tuna_IO.RData
600d2fba8d419f6d8bf55571da83e92a *data/Yellowfin_tuna_IO_SS.RData
682ebd6e0b398308a99622361d908aff *data/datalist
46516c2db9b45fd86fb81a72f28e92bc *data/ourReefFish.RData
2f655e712b07ba168b33e36986b3059e *data/testOM.RData
13b7dc09e976806bbfd6e781e4bb342d *inst/Atlantic_mackerel.csv
276fc115f85899f534b963f841993129 *inst/China_rockfish.csv
28f36819cea0b425dc77df68e14e5065 *inst/Cobia.csv
a2ab49b1d0e325d8b5d836288632108d *inst/Example_datafile.csv
f73d273890ee24a4b1127e83851ff8fd *inst/Gulf_blue_tilefish.csv
880c0f0b44158200b52743cbe8ad3453 *inst/Red_snapper.csv
861ece053b05d44436a1e311c237bb92 *inst/Simulation_1.csv
0607d97e8e5a77ec5fb72f5894dc6d3c *inst/ourReefFish.csv
e094cc606889314e37f465a21cae05fa *man/AJ_GOM.Rd
f6932f9d2e2e321eb541d923ecad4ac2 *man/Albacore.Rd
b12debc6c471602176413cb8348e4ed7 *man/Arrowtooth_Flounder_BC_DFO_iSCAM.Rd
5d5b9afdeceacb48ce0632836ef15193 *man/Atlantic_mackerel.Rd
5ff685d71543e5f9346af51ebbb889ee *man/AvC.Rd
18d5511f9a2c41d55570da637e4a38e8 *man/BK.Rd
f8db3de5a8a74566a26b8cb0c1a63dc3 *man/BK_CC.Rd
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46b6e63d078cd553c252dae2d1f6d201 *man/Bluefin_tuna.Rd
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ee93d2f219e71bd661677eca46b5accf *man/Butterfish.Rd
39ab34036b4ccacac734400dabc81d53 *man/CC1.Rd
1c7e683bebab9cc1627ad55746cee87d *man/CC4.Rd
367b5454891550ab3cc77714b8be0a02 *man/COSEWIC_plot.Rd
d7f1f9313f14a705a3006900e87f2180 *man/CSRA.Rd
5163be1c5f6ffdd7c82d0b59a5b1a083 *man/CSRAfunc.Rd
9eb5daa9d290bab5aea063475752fa42 *man/Can.Rd
1338bab968335e716475d53825542bc0 *man/Canary_Rockfish_BC_DFO.Rd
873c6c97c01072a3cd1334ffe6ab0550 *man/Cant.Rd
414b64cfbbcdcce34a988de083794af8 *man/CheckConverg.Rd
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07e81d1f87dfeb04988f5ce10782f5d4 *man/ChooseEffort.Rd
d424d5d109f780013d4413efe1f2417a *man/ChooseSelect.Rd
313637e9591ab24c7bf337534455b932 *man/Cobia.Rd
bae7065a62d14c3fb194f8e72f481641 *man/CompSRA.Rd
21a02f808ad36ac12856e97225ad0d12 *man/CompSRA4010.Rd
51fa6a7300d2f7563a7a30710399f88f *man/Converge.Rd
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26adf893b66967ed6444359d9cca8481 *man/DAAC.Rd
6bf9dc46d14e1c5e5037026d7a5b85d4 *man/DBSRA.Rd
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51fed8db5223edab4fd69a83da2a700d *man/DBSRA_ML.Rd
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8de95664802cf3a5845779d82fcfb60f *man/DFO_proj.Rd
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56df0f0b7f4a255f7d1cfa497c9810fb *man/Darnley_Bay_Char_DFO.Rd
1c3cf3643f824f7196dbf007d6109169 *man/Data-class.Rd
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0f6bebeb7aae881e5a02a40d4d0580b3 *man/DecE_NDom.Rd
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26bdce70b7cbe3450af3a282ebf1fda1 *man/EtargetLopt.Rd
0a6e6b1aed73557c18b3da2305fdc632 *man/Example_datafile.Rd
4e63190e534911dc29a7eebfc1281c29 *man/FMSYopt.Rd
9a52185c10140219bf3ec212261d9bc8 *man/FMSYref.Rd
391f52fafa2608d33784b9713194cf00 *man/FMSYref50.Rd
1307274cee2cf0f53d696ffc793ebd78 *man/FMSYref75.Rd
d2416921d4270216771dda23abade013 *man/Fadapt.Rd
61ad1980e5f5c6c42a760d5e4bbd72dc *man/Fdem.Rd
8db57e5ac89a0ca49cffc201123ac963 *man/Fdem_CC.Rd
603781c13b53959e612aca50ca2dd524 *man/Fdem_ML.Rd
1a669ff19813afb829e74e98238393f0 *man/Fease-class.Rd
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7216cbc6a61dc5ad80a882994bf7d634 *man/Fease_xl.Rd
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67f78348632c10e05cc7f76b12e1631d *man/FlatE_HDom.Rd
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9cce384dd86a87349b2bd5a851ae14d1 *man/Fratio.Rd
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d8b9e640399fbe7cd2768b8ddbd25540 *man/GB_CC.Rd
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88ec24d2d676e4c3cf42dfb3e44f476f *man/Gcontrol.Rd
1f24f14f4cff7d03dc3f3dddb8fbd36d *man/Generic_DecE.Rd
932788223be72aeb808528298578a74c *man/Generic_FlatE.Rd
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9e294a5e57f593e3ccb68d8e7a2a72b3 *man/Generic_fleet.Rd
12ef1e52fe7c6bcdbcd47b9d5d9926a4 *man/Generic_obs.Rd
152ea0bf35219f9ad81a009b16f184dd *man/Gulf_blue_tilefish.Rd
d1a077339a50dcafd3c8633622ba1595 *man/HDAAC.Rd
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82773db038f1cd509ad2d4e949d835fb *man/IT10.Rd
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65f9d128da41ec0df2feea29a621b9ff *man/IncE_Dom.Rd
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2ac9f165183d91a5838af3f18060a6df *man/MCD.Rd
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38934f94bfc86bb0fae5b1b9722e9ac2 *man/ML2D.Rd
14e7d49c8236f1712b3f8f9a0bfdf4ba *man/MPStats.Rd
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1e572e122d6153227970078e10b472d0 *man/Mackerel.Rd
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2ceca28332a59d103b2245f723a4109c *man/NOAA_plot.Rd
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