de2ff3ed83f2376a2adbe8919c89e8d2 *DESCRIPTION
018cb9e4ea80d65d8608e94a448b8475 *NAMESPACE
68f4e71ddcea118ed4a38c24ebb3e76e *R/adjustPVals.R
81a1c968bb0685afa4f15d01b6d961d7 *R/bigEmpPVals.R
ea1785bc8ece6dfa4e6f8c44eff5a3a5 *R/dCor.R
44b16c9de67dd56aa5157870595a3492 *R/dCorAvg.R
1ccd8080999063f4cec4ce1b355f3d87 *R/dCorClass.R
4ca5a4099358be0f7ccce86381176a19 *R/dCorMats.R
bd539d61a4ca1c358f92808822eebf3c *R/dcTopPairs.R
93feeec5dc018115ed62fe9159f38057 *R/ddMEGENA.R
e274a36090800b3e63e000c9d39c7960 *R/ddcorAll.R
ce753eca383115e5ec09a3d6b79fe181 *R/ddcorClasses.R
396abc5ee978b189505ac2e295064c9d *R/ddcorGO.R
4a97904e01bbd4662cd973c2da961c81 *R/ddplot.R
1647854a730641286a86edc9f66f86bd *R/designMats.R
403c2946549a9af90dab3c2dddca4030 *R/dgca_package.R
959d26f5fc96208c006aef703f3c2c07 *R/filterGenes.R
c457edbc095b13a14d3585283ce099b7 *R/getCors.R
3962cf1109c19cfcfac5f928d4e15d27 *R/getDCorPerm.R
c53b04e4255376bef927de6942354763 *R/getDCors.R
b2aa549cead01693d172b1b41df33044 *R/makeDesign.R
cb09f6e5814f41db5ef7ee8329558e0b *R/matCorSig.R
8cb44ba8d056642e0e4b42cbfb42362c *R/matCorr.R
781f4945f7599d95bcd9f25ccb5165a3 *R/matNSamp.R
198dd25d824065fd98554eb55cad779f *R/moduleDC.R
b9dbd1d2a7c0a91d7e48699b06c7302c *R/moduleGO.R
4e174d5944a0c5128a9616e9932d3141 *R/pairwiseDCor.R
15745c3b3350077b052c6455b6a8abf9 *R/permQValue.R
09ce31f78146e84d4d3955abdae0a5ae *R/plotCors.R
d475cbb17678405187316c81b39ea906 *R/plotGOOnegroup.R
86548c96c589a71fd1dafe8cc2eece5b *R/plotGOTwoGroups.R
a182c4d03d46771eeb3122b56407a47b *R/plotVals.R
68da45845f9c9c8505a36c169fa437f6 *R/topDCGenes.R
fd33a9eb6a11a40e8de0c0dfeb8dcf89 *README.md
f63040188ee775f3ee83137e794d5cea *build/vignette.rds
9bc2940e49ef0f9c8c10029e1b8457f6 *data/ages_darmanis.rda
f83527fcec01692cafa4fd13e48f6de6 *data/darmanis.rda
84174481216beb14b28b3868409f1edd *data/design_mat.rda
ce9d041cc035382e47bac37ceaea54eb *inst/doc/DGCA.Rmd
614265b7d90cb3857c4a1f41ce0b284c *inst/doc/DGCA.html
7aac3cb92cab016d04e440d6c3970d21 *inst/doc/DGCA_basic.R
502548ce991444caf4bc000e375ec2b1 *inst/doc/DGCA_basic.Rmd
18af99d33eefcb94004c32c07e7f2981 *inst/doc/DGCA_basic.html
0ac7459d781a8a155e590aea342a361d *inst/doc/DGCA_modules.Rmd
f4daa9726333f4191dc6dcf625a8c112 *inst/doc/DGCA_modules.pdf
3a2f548a8cd6ce14353063b2f3629e70 *man/DGCA.Rd
37698a7a43d1bb847e50c4a76a2e31c5 *man/adjustPVals.Rd
7f760d54d3255d5d266942b5c4f8d1b2 *man/ages_darmanis.Rd
bc6ad3e63ad395b8a72fb0e8c7a75c2a *man/bigEmpPVals.Rd
105a2eac48085bc388f5aa48f563a34b *man/corMats-class.Rd
41747d388b27227621bc87b6c494767d *man/dCorAvg.Rd
cc86dc6c34d1793f3f45fff3fb88dc61 *man/dCorClass.Rd
dea23a1253ed325fd3e5cedb2e91a002 *man/dCorMats.Rd
df6a0d06f8633b9bb997195f76517f22 *man/dCorrs.Rd
40b1ad87e42310178cfa098360ca031f *man/darmanis.Rd
bd359802f754e0046c885d98a349da89 *man/dcPair-class.Rd
8c2dcb72f8381cf6681d9f3c1005bc3f *man/dcTopPairs.Rd
96ad34c2adc39e866bd1b90d7a9d4335 *man/ddMEGENA.Rd
eb0d31c990e96255522649b8a4254ce6 *man/ddcorAll.Rd
24d34d8effcce831be21680cdcacacac *man/ddcorFindSignificant.Rd
b57546c0e8de43f05cc1a0f1568110ef *man/ddcorGO.Rd
3da7a2ef280910e823ca9f9c6ca4ca7a *man/ddplot.Rd
bfd20cd6daf1e14c18ede15d9a3b4789 *man/design_mat.Rd
3471a5ebce22550b70920eb2703db18e *man/extractModuleGO.Rd
070362c5d3aea5f55c4e58a68d449fec *man/filterGenes.Rd
d449ab155c96cafff0857142fe72c856 *man/findGOTermEnrichment.Rd
2b733e42505b051ae2ddd8ba3ddc4b19 *man/getCors.Rd
76bd4eaf04a3ce6a9f567b4f3a11fe1e *man/getDCorPerm.Rd
a05757d2f7be4ce5635c804d5f30b007 *man/getDCors.Rd
97ce66b14b0c0a13998c029bf106ce6f *man/getGroupsFromDesign.Rd
1cd778d6c5770040a120f9d6df8c9d7c *man/makeDesign.Rd
f86b75b5f9d34d2e86209d644773724d *man/matCorSig.Rd
b69597cc4559559e5c7c28756c7a8491 *man/matCorr.Rd
68501b922fc5d61cbbd58f348c058f14 *man/matNSamp.Rd
fbb65e70e8a1983f6208409595e91183 *man/moduleDC.Rd
2583f766015a48599fbcf4899de08b3d *man/moduleGO.Rd
0d8bfc7f5d632f97afc7cd222706ce80 *man/pairwiseDCor.Rd
0557dfb80b70e05fb029bae28f281c13 *man/permQValue.Rd
26730295d75a7c36d039bcc41b1a5be6 *man/plotCors.Rd
2003c8feffed935ede7da1d232b7aaa9 *man/plotGOOneGroup.Rd
6b3c4456a21022010353d58f655b39dd *man/plotGOTwoGroups.Rd
a405527fa045844c812417fd5a056c3d *man/plotModuleGO.Rd
109b710b5159230db3b75027296d338f *man/plotVals.Rd
c4a6301337a00384855e1c85c38f382e *man/switchGenesToHGCN.Rd
76ab96281469ade2405e396086337365 *man/topDCGenes.Rd
5a87ac41883e4bb42b5c3b2cd2d6e849 *tests/testthat.R
684265ee8f1ae31a3c4ca2e8a4339655 *tests/testthat/darmanis_design_matrix.rda
032cc056700401cd96bd19e806481252 *tests/testthat/darmanis_test.rda
6b3dc23fa08144f8a8d3bd09a32e9468 *tests/testthat/test-adjP.R
89a3b55b088ecf298fbca7982f4fbf5a *tests/testthat/test-dCorAvg.R
6a28eee3287eeec1f43c1ed30aa82647 *tests/testthat/test-dCorrs.R
2b2f49670488cebff6f107c043eb9751 *tests/testthat/test-ddcor-pipeline.R
06e4495cc3657ebb6062d911d31eed6e *tests/testthat/test-ddmegena.R
77b41cde7ddc6367b112175088d10140 *tests/testthat/test-filterGenes.R
98dac51008432d48aee0b7c4ec364240 *tests/testthat/test-getCors.R
43c50331634dd837e9dbd9032a9b49ea *tests/testthat/test-matCors.R
502548ce991444caf4bc000e375ec2b1 *vignettes/DGCA_basic.Rmd
