# Generated by roxygen2: do not edit by hand

export(create_dir_struct)
export(create_master_res)
export(create_relabel_field)
export(de_boxplot)
export(de_counts)
export(de_density_plot)
export(de_diverge_plot)
export(de_filter)
export(de_heat)
export(de_profile_plot)
export(de_series)
export(de_volcano)
export(enrich_res)
export(exclude_data_subset)
export(get_de_data)
export(init_cutoffs)
export(init_data_paths)
export(keep_data_subset)
export(make_composite_field)
export(plot_dendro)
export(plot_euclid_dist)
export(plot_gene)
export(plot_group_stats)
export(plot_mds)
export(plot_mds_hulls)
export(plot_poisson_dist)
export(prep_counts)
export(prep_dds_from_data)
export(prep_targets)
export(set_output_mode)
export(transpose_gene_ids)
export(write_all_de_results)
exportClasses(DESeqResMeta)
import(DESeq2)
import(MASS)
import(PoiClaClu)
import(RColorBrewer)
import(ggplot2)
import(ggsci)
import(ggthemes)
import(gridExtra)
import(methods)
import(pheatmap)
import(plyr)
import(reshape2)
importClassesFrom(DESeq2,DESeqResults)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,colData)
importFrom(ggdendro,dendro_data)
importFrom(ggdendro,label)
importFrom(ggdendro,segment)
importFrom(grDevices,chull)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,png)
importFrom(stats,cmdscale)
importFrom(stats,cutree)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,sd)
importFrom(stats,var)
importFrom(stats,wilcox.test)
importFrom(utils,head)
importFrom(utils,read.csv)
importFrom(utils,write.table)
