40634383fb2e4a5ada02c2150426e42d *DESCRIPTION
15f1bd805a7426ebba39f478553e087a *NAMESPACE
4c2979c7a3f2c8a94ba9a84d1c8e8a64 *R/Corbi-package.R
80681c66b3cda2c33da0cff94ba4c2bd *R/deg_normalization.R
2da6006a24297b72df7dff6396e20ffd *R/deg_rationet.R
e7b651ed36e71cda9fb673ae759633d8 *R/deg_simulation.R
bf6192866bf1dbabd417b2ab968360ad *R/markrank.R
04d9b251740daba6ed1872d31afa4382 *R/multihyper.R
0f057dc5131c87a5353002cc3d54a64c *R/net_align.R
cb0418287a4ea8c0fd842dec32bdf193 *R/net_functions.R
41ebb3ec428446ee19530398e782ef47 *R/net_query.R
563b193b507f7488c3398ff177525d3f *R/net_query_batch.R
16023207c8e9ff3da6306d22c9fa0ede *R/pro_align.R
43ee2375f1e5c43ef91fe1f2f816639b *R/subnets.R
01da9b2e428958b95007353935685ffa *R/utils.R
dba81f89add0144865ec07dbf6946038 *README.md
58d45f7b5fd1be5ade9d14fea387f0d0 *build/vignette.rds
50c5f68e198256b4d7e2de74e128c785 *inst/doc/MarkRank.R
674747c619c079e69f06d3be10155d8c *inst/doc/MarkRank.Rmd
f22be16acb2ec01826bbfcb3c662e568 *inst/doc/MarkRank.pdf
74458465a34e3ef11947167195e4c5a2 *man/Corbi-package.Rd
d3e15a16f4451d2016b568af571272f8 *man/URG_getFactor.Rd
e9afbe575e193c615579886ad75027c7 *man/URG_normalize.Rd
855c244b9ac0ada882016d7a2ab5c3a9 *man/best_subnets.Rd
cd67b12ef6442c445ce3af67c2ca8a1e *man/column.Rd
f2f11a82bb6d614e4b452edd3c2689d9 *man/extend_subnets.Rd
add25289b3bcda9f3d918f2767c2e57b *man/get_adjusted_deg_diff.Rd
9ed5b989a037eab1b0cefece03eff835 *man/get_diff_ratio_net.Rd
245eb4508a6e8634ca074868f38bd5c9 *man/get_ratio_distribution.Rd
c29d607facc6b4676263be761e487a08 *man/get_ratio_distribution2.Rd
604c9f5818ee671646c496a48dfac704 *man/get_ratio_variance.Rd
845980fbac64a11cf9ded97b42e24c9f *man/get_shortest_distances.Rd
e478b2a5855e9b4d7d1594e05f989fe7 *man/get_subnets.Rd
b3869e0ffa691157e18e321435810819 *man/kappa_score.Rd
0addaa0f4ccdc751467d2fdc164ad681 *man/make_DEG_data.Rd
7360ecb86eb39acdad92f7ae71fc8677 *man/make_DEG_data2.Rd
07c59846c3f38e2074726b126d33c48b *man/make_DEG_pattern.Rd
909e66519f24946c671e951773653064 *man/markrank.Rd
ae1666059d3f064d8e30496d1e1d28a5 *man/netDEG.Rd
df0573a025d3452a3742b5010b255220 *man/netDEG_pvalue.Rd
c6624e7320b11ad196482a14bd187fe8 *man/net_align.Rd
2192023f4425a291784a7b4eb63c3f8e *man/net_query.Rd
c362e96f471eef92ebf75ff779913604 *man/nnzero.Rd
7d6b503910ca1fe85a79c8bb4264cc48 *man/p_combine.Rd
cb1c985116d4b75cead53ea59cf4136d *man/pmultihyper.Rd
546bdf08a22fa510f8030607a0d524ce *man/pmultinom.Rd
b6011ddf482de17bef6d88a9a291035c *man/read_net.Rd
91157dc78f57baa7665f7b306aebb241 *man/rmultihyper.Rd
45cc3282f2fb71e87c4b16a813d58eee *man/simulate_dropout.Rd
a90029c05822320b645cd9aee0773cf2 *man/simulate_dropout2.Rd
ea719dc36b19f1c96ca69170049d08f9 *man/simulate_sample_groups.Rd
c02bd3a53d4e861026771520d368046a *man/submatrix.Rd
e485664bb652d7e55cbcc1fb4e0600c3 *man/write_net.Rd
b0308cde2de54a395e79d7bae51eb818 *src/Corbi.cpp
015ef3af6ac53df7a9ea22cf03fdd6cb *src/Corbi.h
715c827549ff4c884e146355817c791d *src/NetDEG.cpp
5e366483217ac19f7f83be7259e11947 *src/NetQuery.cpp
70415f9e38f7779a3ea5391dcfe8c995 *src/ProAlign.cpp
303ba16516eaf42ab1e550ff09ac8131 *src/Subnets.cpp
102a2f5f2e40c1776208b133a47a8a9d *src/misc.h
d7d20ccca39d01667e3719b9fe8f2ad3 *src/multihyper.cpp
2df73e264d151846212310a7605fd2a6 *src/quantile.cpp
5d0e09f676265dfb13daead45e927017 *src/quantile.h
83edbccc90560e5f481b6f5fe9392b14 *src/utils.cpp
880e32107ee394f3c925f2b669e1e969 *src/utils.h
a68790d0e4cc5bc1a926838c6083b7ba *tests/net_align/answer1.txt
d9602b4a2d7de3f59abee92de27c042e *tests/net_align/answer1_uni.txt
13f6765b3012f560e7a8e484d9b6e7f6 *tests/net_align/net1.txt
c524a16c37d360c70e54b23dc960bf6e *tests/net_align/net2.txt
bb60a7e7d33e3e21793b660d14ef4ca5 *tests/net_align/net3.txt
bdef3c60888a8fc861d9bff90076f5c9 *tests/net_align/sim.txt
c2041e817482e9d528b2015d750c5b80 *tests/net_query/answer1.txt
c155d694a1b4cbdfed8e21a7f371741a *tests/net_query/answer2.txt
13f6765b3012f560e7a8e484d9b6e7f6 *tests/net_query/query1.txt
c524a16c37d360c70e54b23dc960bf6e *tests/net_query/query2.txt
bdef3c60888a8fc861d9bff90076f5c9 *tests/net_query/sim.txt
bb60a7e7d33e3e21793b660d14ef4ca5 *tests/net_query/target.txt
a7cdc25003b2cecab7ce242892a0faf9 *tests/test_net_align.R
07cfe4f3f449b059f31a0c890910a2fb *tests/test_net_query.R
674747c619c079e69f06d3be10155d8c *vignettes/MarkRank.Rmd
e75659576664791dcc2c0cac9e6b9f3a *vignettes/network.txt
7c39044270a4f07e1d7d944c2097b88f *vignettes/search_net.R
