3ef7f93a47ef8ea4817d7d61834bc637 *DESCRIPTION
a0d5f2f1da7c73dd6de4311a791eaf8c *NAMESPACE
e55246ee8b3e451b5825fd9c08566059 *NEWS.md
e2fd2d4b22e6f74891a60bedd7952962 *R/Cox_Regression.R
2f3c9d0a4aede46421039e057817dd9d *R/PlotTypes.R
c1bfcf10a62c0149b36ef7e14af7d950 *R/Poisson_Regression.R
81fd4cd2f51273c004eb59a53714de50 *R/RcppExports.R
c693405029025c2bef835d0c5c303b5e *R/Utility.R
19fa2f41649e8ede3f840c98d0f11472 *R/utils-roxygen.R
7ad0184fcc2540c499f8b5f84795a141 *README.md
0f0bf99be8dc9dc4386e85de88afae60 *build/vignette.rds
38ba0348cef0ac8408c22acb51d50d83 *cleanup
64726fb8cb6e37288c195da116ec2ec3 *cleanup.win
3d9610c446e77cfc847bcbe9e642d597 *configure
9c8357a3b6c48602894d5596e11575e1 *inst/CITATION
589c120997a711cdeed48820cadd90bd *inst/WORDLIST
fb3bf692f10b750c63d9fe07011da7a9 *inst/doc/Alt_Distrib_Starts.R
8fd16c04b2737ca35f42e2232ccdfa80 *inst/doc/Alt_Distrib_Starts.Rmd
21c1a0e29e0de893b863fe2f5f085170 *inst/doc/Alt_Distrib_Starts.html
3765c76f470f2ee0cd5e93ed9b32f904 *inst/doc/Alt_Run_Opt.R
0de9eb88e5d523bd2a8b9ee568d49346 *inst/doc/Alt_Run_Opt.Rmd
1af7ddba203d0fec1c7073203b4709ee *inst/doc/Alt_Run_Opt.html
83d75af913a808c2745393d83763fcbf *inst/doc/Control_Options.R
99000cd610109bcc08461e94623f5f2b *inst/doc/Control_Options.Rmd
85bf2276e58a409118ce506b97404981 *inst/doc/Control_Options.html
3662984cdb292895f37343c366044026 *inst/doc/Dose_Formula_Inputs.R
10d2408aa694af3416258d18ee23bb22 *inst/doc/Dose_Formula_Inputs.Rmd
5c04c03dd0189a79a44eb63b8231b9b4 *inst/doc/Dose_Formula_Inputs.html
e493dffadfa38c1654d62ebad06c00dc *inst/doc/Equation_Expression.R
f6cec8dbdd4c327241565a256cb5bceb *inst/doc/Equation_Expression.Rmd
e22d569ab19405040ef6309e49166f5c *inst/doc/Equation_Expression.html
d54192c9f48afe3816fd6d0e9816b059 *inst/doc/Excess_and_Predicted_Cases.R
7852b559250418556d3912b1e38ea1c2 *inst/doc/Excess_and_Predicted_Cases.Rmd
9d4daf54b5dbe3aaddc8bb554dbcb055 *inst/doc/Excess_and_Predicted_Cases.html
2346d99e249d1e9641dc68936f2fde79 *inst/doc/Grad_Hess.R
7272639797bb16c8cd12788af62aff72 *inst/doc/Grad_Hess.Rmd
de48e6717725ad55d93eaad3e99c9833 *inst/doc/Grad_Hess.html
cf2c69c02ba4c2b5f302e570344a24a2 *inst/doc/Multi_Realization.R
be095a5f71dee4117ffeeb71d0319b0f *inst/doc/Multi_Realization.Rmd
0667718585c81a9fdbc4ea40fdc67d63 *inst/doc/Multi_Realization.html
ea770dc82ec295a5a25d780bf0cab915 *inst/doc/Plotting_And_Analysis.R
560f4eb2cf5b043cc380db8fa066723f *inst/doc/Plotting_And_Analysis.Rmd
b9dad5abfee64f8a1f7e669f9561ff2f *inst/doc/Plotting_And_Analysis.html
efc850f9e6e0844f4ce456a184e24664 *inst/doc/SMR_Analysis.R
f79d11a239bdcb46e65ff0270f775e59 *inst/doc/SMR_Analysis.Rmd
9a2c98d6c18e9f02e2dcd61559d8c220 *inst/doc/SMR_Analysis.html
ad6df18f787e86a0b10ef03ebe5241b0 *inst/doc/Script_Comparison_Epicure.R
254774a05442c2e6d2ddb1591d8ee16b *inst/doc/Script_Comparison_Epicure.Rmd
d04012bd783e77299c1761aff389c1a0 *inst/doc/Script_Comparison_Epicure.html
6414c7c3faba66b04f93511747803312 *inst/doc/Starting-Description.R
be43d050f6ce5bcbffc5d7c7f53fe5f2 *inst/doc/Starting-Description.Rmd
dcbddf738003f00c2fe307354cef53d2 *inst/doc/Starting-Description.html
1f3898bacba95d43b29f12d1463e4646 *inst/doc/Time_Dep_Cov.R
437197cf3e0454b6dce82f2e95be00fc *inst/doc/Time_Dep_Cov.Rmd
4239a005ec1bc0dfcb52c0962a418404 *inst/doc/Time_Dep_Cov.html
759093d70f3e4c8ebe98f0d9e193d8fb *inst/doc/Wald_and_Log_Bound.R
65dc140c0e8aafe57d2b770e7fd0f5e5 *inst/doc/Wald_and_Log_Bound.Rmd
950805b165ce201c10af7ef6df4d089e *inst/doc/Wald_and_Log_Bound.html
bf1d1a10d32ab16c515a61e3d560a5d7 *inst/doc/count_time_tables.R
e104b03de1a19275832e132b78a7c2cd *inst/doc/count_time_tables.Rmd
274023b9f02a03aa632f11e4480e79f4 *inst/doc/count_time_tables.html
a98b3de5352e3aaacdb503c60278b531 *man/Check_Dupe_Columns.Rd
c88bd71e532f801370f117109873d843 *man/Check_Trunc.Rd
ab984bb91cd570b831d1dc5fffbb3679 *man/Check_Verbose.Rd
32bb309f9a5faa0c874006efba4aca65 *man/Convert_Model_Eq.Rd
5ade4e32cf7443dba8d65a41839faeb3 *man/Correct_Formula_Order.Rd
6c87cd20368942d0af35f650207f44c0 *man/CoxCurveSolver.Rd
2ca07ba8bb4d34e7c794ddef6772d247 *man/Cox_Relative_Risk.Rd
0a86779cb47c2100b26599fee634894d *man/Date_Shift.Rd
09cc078fdede2abc71d9130b1f2ca805 *man/Def_Control.Rd
a01e395c1c163158c782ad564c376686 *man/Def_Control_Guess.Rd
235c15c7ec9dd0feea0e000df2a81226 *man/Def_model_control.Rd
2b08d2f3ead973d967412fe12338b532 *man/Def_modelform_fix.Rd
78b0e24c898d0cf5ee287f77ebb5dac9 *man/Event_Count_Gen.Rd
5456130844ff8668e1917a1777697816 *man/Event_Time_Gen.Rd
57b160e1ec0b509b498661de3512d403 *man/Gather_Guesses_CPP.Rd
59441e37290afc048bd628e9b0edd634 *man/GetCensWeight.Rd
f7582d7bc5fd8943771a0321101db59a *man/Interpret_Output.Rd
4acb0e36dfed919d9ca79997124edc94 *man/Joint_Multiple_Events.Rd
6b20b598b12d1498d7599635a6c1828d *man/Likelihood_Ratio_Test.Rd
b188b9f818b7e5d8b169f07679b4f972 *man/Linked_Dose_Formula.Rd
f5ad28450c0deba3db2a2ee48fc94293 *man/Linked_Lin_Exp_Para.Rd
9b826f9617aa34a9208ed02ca2bd83c2 *man/Model_Results_Log.Rd
81bbcb4460d2c5fbf0aedd02e61e105a *man/OMP_Check.Rd
4e5c7afd4ec71df9d1c7ac3e471b9fb7 *man/PoissonCurveSolver.Rd
b21c51d3ae26ee66aa36cc6bd1fe3b05 *man/Rcomp_version.Rd
20c36af88c4b9cfaeaae1b4a14da9bd7 *man/Rcpp_version.Rd
0673f5b4428b951b6608b57773494503 *man/Replace_Missing.Rd
39d0896ca9ef1af865db44087876a0f7 *man/RunCoxNull.Rd
bef985793af91ad6b22b2236c789ca8a *man/RunCoxPlots.Rd
7fadf82ef5938100a3a9bf56cb387138 *man/RunCoxRegression.Rd
dd3e0a002ada682135e02f798aa56ac0 *man/RunCoxRegression_Basic.Rd
89e4e72172064e3c6e996f5acf208160 *man/RunCoxRegression_CR.Rd
cbf164f7dfb85006d4e170b0a2cf00d2 *man/RunCoxRegression_Guesses_CPP.Rd
0a31feded7f1e12ed879c1cbe8cf3a7b *man/RunCoxRegression_Omnibus.Rd
7696543f8a7170a24f5cd27a9b318a48 *man/RunCoxRegression_Omnibus_Multidose.Rd
cdbbc0ba99443ac6bab69857419cfc3f *man/RunCoxRegression_Single.Rd
fba69fa9d73c509613e47ebfeb33d4c5 *man/RunCoxRegression_Strata.Rd
54ea37461cb985e955cefb52571f1e4e *man/RunCoxRegression_Tier_Guesses.Rd
2c59244987a93f1757c0a90faf2a516d *man/RunPoissonEventAssignment.Rd
d39ed973b4d23622117a4052112a2650 *man/RunPoissonEventAssignment_bound.Rd
b763026a38ec305f4f14c2ded63de71e *man/RunPoissonRegression.Rd
f8bc73f8484d97ba60a6b4da354cc49e *man/RunPoissonRegression_Guesses_CPP.Rd
c91bd52751d3d19dfa1a8faac378939e *man/RunPoissonRegression_Joint_Omnibus.Rd
4f9aedb8cac75b1e8f1678138b4b9d0b *man/RunPoissonRegression_Omnibus.Rd
ad200009a2200078a7461609d2939368 *man/RunPoissonRegression_Residual.Rd
d109cd08e44971ba8989b9e493770f19 *man/RunPoissonRegression_Single.Rd
744c1771883b3cc36917d79d95fac004 *man/RunPoissonRegression_Strata.Rd
b3032c0dc3a9f475d6b2982f28f46e8f *man/RunPoissonRegression_Tier_Guesses.Rd
e807aa9c3920c660e2dba8552e06e10a *man/System_Version.Rd
315d417998bb8547ea376d42ef999a91 *man/Time_Since.Rd
e58d3ff9cebe207808c8e4e999a55ecf *man/factorize.Rd
1b7c9953b42e91401a45a7dcd1887eed *man/factorize_par.Rd
600fce9f5816d0ed2cb10e903ec2c048 *man/gcc_version.Rd
78237cb394a20a815e64ec731d7dfd73 *man/gen_time_dep.Rd
ceb3bf9413687c09ca86662b10f42bc6 *man/get_os.Rd
82d833b58fdcf67996cbb0fe4eb12857 *man/interact_them.Rd
37889acdda947d5ab707a08ec10b0e8c *src/Calc_Repeated.cpp
905272e6b0c34f0dadad64c76b251f83 *src/Calc_Repeated.h
62e402dd7a9a38a2d192195059a01c39 *src/Colossus_types.h
0d2b70721fd90ecf23f4eb8c568bcc13 *src/Main_Functions.cpp
2ef3fe78a8c01250fcca73fb559906cd *src/Main_Functions.h
fee02fbe88c04c99eb902a6c88534c3c *src/Makevars.in
2160fcff054e7f622f40f10f4c1b9ac4 *src/Makevars.win
112ac00a2e8e0edcffe2c353c6ade9fc *src/Omnibus_Pieces.cpp
0c56001bfad1f154ca9b08266d4e543f *src/Omnibus_Pieces.h
cf06b3f70a011af7b895d7879a9ee4a3 *src/Plot_Extensions.cpp
2edcac19b05571d23c3a5d6573ed1d6f *src/Plot_Extensions.h
d35029344f0ba63c5bf082721a569621 *src/R_Interface.cpp
9819ff25bb7a52437c9d3257f67a2668 *src/R_Interface.h
70079bffa129e41c6aeb38e4bf90e1e0 *src/RcppExports.cpp
642ab247cef4736488ec422fdbd3846d *src/Step_Calc.cpp
43cba15159347b1a60c49c0c559e6ba4 *src/Step_Calc.h
1861ebe8be556584f100b7c97143aa1e *src/Subterms_Risk.cpp
91ca759302b1b9c7e6910e6d314721d5 *src/Subterms_Risk.h
50f330eeca8db092d6807e04457bd06d *tests/spelling.R
0350350391ab30b3e0a0ec3353cc8b7c *tests/testthat.R
25c6bb41e6ad82db306a1f06bad00847 *tests/testthat/Assigned_Check.csv
60e01a966792bc8d7f6e27124dc8f029 *tests/testthat/MULTI_COV.csv
96831dc35f40c757538a7ac7a97536dd *tests/testthat/base_example.csv
44efefec3c4c2c8c075996d5b82a8960 *tests/testthat/dose.csv
c2d2fe68f1664d6b7c6fd77cd2de9916 *tests/testthat/l_pl_0.csv
e34d071e947b48c8c0328aaf56928956 *tests/testthat/l_pl_A_0.csv
ff21327faf666f2def06035a8592e761 *tests/testthat/ll_0.csv
fc69bff3eb2f66b8cedcf86a832666c9 *tests/testthat/ll_cens_0.csv
f8a0597d561e296f39774a158f310277 *tests/testthat/ll_comp_0.csv
6a33413c4d4add76be8869abfa9dc5c1 *tests/testthat/test-Assigned.R
ebcb774c71c111e3288e54ba50d4ed35 *tests/testthat/test-Cox_Plot.R
0bad219eda9143ccc6987e8dcfd0eb65 *tests/testthat/test-Cox_Regression.R
28b9afd77114dc17496486c674eebbed *tests/testthat/test-Gradient.R
3b5d1bd7940bff3d22ab81a9c83477b5 *tests/testthat/test-Guess.R
dad56e29278f9d46b83427748ca754ef *tests/testthat/test-Joint.R
6e88675d55d37d96c9ecf9f24f84249f *tests/testthat/test-Logbound.R
c0b18b9cedb47b7eedf13bdec4625ea7 *tests/testthat/test-Multidose.R
4de67ae5181ab8b5409ae75d1ce166b4 *tests/testthat/test-Omnibus.R
f0c312ee38ec7e057e820dc3c97141f1 *tests/testthat/test-Poisson_Regression.R
e3994d5d68b02acac375bac9ebafe97b *tests/testthat/test-Poisson_Residual.R
19a51b61c6ac0f133c0096d196705924 *tests/testthat/test-Simplify.R
03f5355addd3a7ec44795f2f611d2f1b *tests/testthat/test-Table.R
d5a130aa921802553568b6aba28a691e *tests/testthat/test-Utility.R
8b6b0a0e61f4d2cfbafcff6d1ef6d559 *tools/config.R
38ac37bc72560d175fd527894cf53735 *tools/config/cleanup.R
5454d6054979af30235a15f200c25f4f *tools/config/configure.R
8fd16c04b2737ca35f42e2232ccdfa80 *vignettes/Alt_Distrib_Starts.Rmd
0de9eb88e5d523bd2a8b9ee568d49346 *vignettes/Alt_Run_Opt.Rmd
99000cd610109bcc08461e94623f5f2b *vignettes/Control_Options.Rmd
10d2408aa694af3416258d18ee23bb22 *vignettes/Dose_Formula_Inputs.Rmd
f6cec8dbdd4c327241565a256cb5bceb *vignettes/Equation_Expression.Rmd
7852b559250418556d3912b1e38ea1c2 *vignettes/Excess_and_Predicted_Cases.Rmd
7272639797bb16c8cd12788af62aff72 *vignettes/Grad_Hess.Rmd
be095a5f71dee4117ffeeb71d0319b0f *vignettes/Multi_Realization.Rmd
560f4eb2cf5b043cc380db8fa066723f *vignettes/Plotting_And_Analysis.Rmd
f79d11a239bdcb46e65ff0270f775e59 *vignettes/SMR_Analysis.Rmd
254774a05442c2e6d2ddb1591d8ee16b *vignettes/Script_Comparison_Epicure.Rmd
be43d050f6ce5bcbffc5d7c7f53fe5f2 *vignettes/Starting-Description.Rmd
437197cf3e0454b6dce82f2e95be00fc *vignettes/Time_Dep_Cov.Rmd
65dc140c0e8aafe57d2b770e7fd0f5e5 *vignettes/Wald_and_Log_Bound.Rmd
e104b03de1a19275832e132b78a7c2cd *vignettes/count_time_tables.Rmd
