56f84a7821371e3cd358d7480c6e6afe *DESCRIPTION
34824d794161e423834e24fd9592a7a1 *NAMESPACE
eef1f20e9cefa496bee2dff7e6a22519 *NEWS.md
d85c70d7cc13131129503e9d73f8eb1b *R/CodelistFromCodelistWithDetails.R
8426d9bfed586d465a8fbd70434b90fd *R/CodelistGenerator-package.R
8ba9cb23bffe2621a5965963ab621a7d *R/checks.R
d3319f719f0ccb8ab9d9ba400a68bcc3 *R/codesFromConceptSet.R
9adaf692cd8e1ba34949cbfd1d677168 *R/codesInUse.R
e0fab5fdc5de3ab4622d547add1b3a36 *R/compareCodelists.R
eb959293d0ae26ca18bd8daf70661cd1 *R/data.R
416227abe8d5e7e8439f03e2221d1c63 *R/drugCodes.R
a10b2263395756e98f76c344a032b4b1 *R/getCandidateCodes.R
793a36c2f03f97f59dc296076549b04d *R/getDoseUnit.R
14fa25d7e533df3bf0b7238fd44816d3 *R/getICD10StandardCodes.R
c73f2bb789b93bea62dabcede23a9a73 *R/getMappings.R
61a360121813a9ae32b2905419207fa4 *R/getRoutes.R
34bc9d8ecac1dfb5c04293936bbbbac8 *R/helperFunctions.R
dde6e2b088236ab4f40f46ad8fe8cffe *R/inputValidation.R
89643b29f8faedb324ef0950852f85a7 *R/mockVocabRef.R
4ad10e11562ac5f9bb1f9132ed120177 *R/runSearch.R
85ff1e544d65aa556d5315d8033a1fed *R/stratifyByConcept.R
79808e433f0a63f1d1d139f6ed47ff53 *R/stratifyByDoseUnit.R
ede733acb9b13c8a26fb2951b692f9aa *R/stratifyByRoute.R
876003a2beeaffd76bb0304bd7544d7d *R/subsetOnDomain.R
4e8b4cca6a6160fb0e7ef294de839015 *R/subsetOnDoseUnit.R
8a4e7449bc41ebcc8cc190081a726366 *R/subsetOnRouteCategory.R
21972fb83de653ba0bd5b514928ec65d *R/summariseAchillesCodeUse.R
46c272a44c01df50d0a459ce13a9c84d *R/summariseCodeUse.R
d36b6ab8f2de9cee0855177c042560af *R/summariseOrphanCodes.R
57c9526b78e6003cf6c98f40217a3cdc *R/summariseUnmappedCodes.R
31f870fc962e8b27c35c1456cb3fc32e *R/sysdata.rda
0d3746540893c042cde0eb578fcf7f7e *R/tableAchillesCodeUse.R
0970978714e0f8d9fb32d9b0f29c101b *R/tableCodeUse.R
fdcac86d88f7d7d6ba3294168bb4e9a1 *R/tableUnmappedCodes.R
ac879344178122d7dcdc5bfae4178c04 *R/vocabUtilities.R
76c3fb8ca2959cb965a019d6fc249a2f *README.md
4df0fdf2fad909d377bfcee854b954db *build/vignette.rds
9c639bb4739c5c356e98d0295f8e6982 *data/doseFormToRoute.rda
42b65802d597896b28b57a304820609c *inst/WORDLIST
3ca9cc5c01f646e385c3530e340c0903 *inst/cohorts/cohorts.json
d41d8cd98f00b204e9800998ecf8427e *inst/cohorts/extra_file.txt
820a94709409c3b4bd92fccfb055c944 *inst/cohorts2/GIBleed_male.json
7b66d8b088d973e3fc02396f6ef0ed09 *inst/cohorts2/cerebral_venous_sinus_thrombosis_01.json
d23d36c9c73e3b302e870efd856749b7 *inst/cohorts2/deep_vein_thrombosis_01.json
a0783e75ba5be80391a3938d31c2338d *inst/cohorts_for_mock/oa_desc.json
4eed1d70d532d224af44c7c080ddf3e6 *inst/cohorts_for_mock/oa_no_desc.json
a0783e75ba5be80391a3938d31c2338d *inst/cohorts_for_mock_dups/oa_desc.json
f86b08baf74ab3e00fe012be61e29314 *inst/cohorts_for_mock_dups/oa_no_desc.json
dffe4627e0a18749069471b9eae24936 *inst/cohorts_for_mock_with_exclude/oa_desc.json
3819d7fc0dd23dc6cfeea1608769e6ad *inst/cohorts_for_mock_with_mapped/oa_desc.json
4eed1d70d532d224af44c7c080ddf3e6 *inst/cohorts_for_mock_with_mapped/oa_no_desc.json
28e6093c2345696d3f91fea3e816dcb3 *inst/concepts/acetaminophen.json
d41d8cd98f00b204e9800998ecf8427e *inst/concepts/extra_file.txt
28bafd24684c6e9809c3942abc441d2d *inst/concepts/influenza.json
ffab0d7da54a6ba104894ffcaef29c4a *inst/concepts_dbms/oa_desc.json
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01c7b29a2c5b0a1a69c15744ad219cc5 *inst/concepts_for_mock/oa_no_desc.json
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800a730473dda4cb2e8f38499bb9cfaf *inst/concepts_for_mock_with_exclude/oa_with_excluded.json
800a730473dda4cb2e8f38499bb9cfaf *inst/concepts_for_mock_with_exclude/oa_with_excluded2.json
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8f9fe3443c0fd13d189bece68077d4a5 *inst/concepts_for_mock_with_mapped/oa_with_mapped.json
06e34ed864cbd07656dc66c882d3efa8 *inst/doc/a01_Introduction_to_CodelistGenerator.R
eedca2af464c63211e3bb68f8e044f17 *inst/doc/a01_Introduction_to_CodelistGenerator.Rmd
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5ac69bed391d49b6f9ecd849ef0c2a4e *inst/doc/a04_Vocab_based_codelists.R
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3bf66c1e759d7a5201f8868a14e744b5 *inst/introData02.RData
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3f0aee4d7f3b1a680b664964f756687c *inst/medData01.RData
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3f0aee4d7f3b1a680b664964f756687c *inst/medData03.RData
35b4a2efa38e84d887ba1a0b82f664e7 *inst/medDataConceptClass.RData
84d8224e1c60d2e100ee4854e139646b *inst/medDataDoseForms.RData
28e6093c2345696d3f91fea3e816dcb3 *inst/not_all_concept_sets/acetaminophen.json
424674aa61b879dace87fb4533ab41b4 *inst/not_all_concept_sets/cohort_def.json
28bafd24684c6e9809c3942abc441d2d *inst/not_all_concept_sets/influenza.json
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6dc9a675f6a7e02312b13fe3e5ec3c95 *man/CodelistGenerator-package.Rd
0a3fc1fae74b8bb44f38e3b9abc029b1 *man/availableATC.Rd
596b6a3d15e73f5adf1cc5432dde24ba *man/availableICD10.Rd
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3f6fbfb077f68c992f6870ec71ef1243 *man/codesFromConceptSet.Rd
0b88a5f7ebd9fac860ad43d92b2eaa68 *man/codesInUse.Rd
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0ad5833d2cbce1880380f57c40f0e762 *man/doseFormToRoute.Rd
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de83a01d22cd6af9f16a77ebc4c9ba87 *man/getATCCodes.Rd
8219e84734006a89eedcedb6cdcb937d *man/getCandidateCodes.Rd
33ffb158ee623a601a95266f0c158c25 *man/getConceptClassId.Rd
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b9ed1ed361cf5206efba43fe4d8e647d *man/getDomains.Rd
635a3d1fa208f13c7d93c94f6f577bdf *man/getDoseForm.Rd
1c39b45f449b7c2772216a5ee50ebae0 *man/getDoseUnit.Rd
a6ce9ce1bb4c2c5fa5b34f0dd63b0018 *man/getDrugIngredientCodes.Rd
d4ac75795485f939590a6bf7223fe7e7 *man/getICD10StandardCodes.Rd
7e30fab3843a6dbb8b07035396ebba06 *man/getMappings.Rd
60e7473112d10d474e38568f705b1ede *man/getRelationshipId.Rd
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104edf9566b6201072b0c91f195e88f7 *man/getVocabVersion.Rd
1fd7ba08eb48a4e964edad9108b0850c *man/getVocabularies.Rd
b4b2a1aaed51a38bed9f6e2f1b19f4e5 *man/mockVocabRef.Rd
727df5c69634b85566df32a92ba6c28b *man/sourceCodesInUse.Rd
dc4b18f1304a443f2c0f664941b195d8 *man/stratifyByConcept.Rd
d614ab2c22de8d072f3fdbf8bf8d2cf3 *man/stratifyByDoseUnit.Rd
3c981b6cedc778e6f5d8c08be11ce78a *man/stratifyByRouteCategory.Rd
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54146b9b5e5a0ae8f7058ca759d754e7 *man/subsetOnRouteCategory.Rd
7d1eca439b26f6ff9766700e6c30d703 *man/subsetToCodesInUse.Rd
84de2bf6885c3f1c15b00f73514648b9 *man/summariseAchillesCodeUse.Rd
e1e92aa00d097dd7ee63dc6aaefabb8c *man/summariseCodeUse.Rd
40b9b72bb050b2165bbd024226d36ce5 *man/summariseCohortCodeUse.Rd
459b24a28d156d4555992b8f03485d56 *man/summariseOrphanCodes.Rd
00582aa039bb937613c14c65368e7da9 *man/summariseUnmappedCodes.Rd
bed64eda097e779d940b4b0b253c4094 *man/tableAchillesCodeUse.Rd
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7c1414d09468f8650cdb48f4591408d9 *man/tableOrphanCodes.Rd
33eb4c89127433a1de99cacf05d69c3c *man/tableUnmappedCodes.Rd
54c6e8ade577cd9e23bcf07817edb66f *tests/testthat.R
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eedca2af464c63211e3bb68f8e044f17 *vignettes/a01_Introduction_to_CodelistGenerator.Rmd
780a77cf6cd41257d3422d1381c348c2 *vignettes/a02_Candidate_codes_OA.Rmd
4975089731ec431699910eec6223b453 *vignettes/a03_Options_for_CodelistGenerator.Rmd
5da3c3d0f6e6d19f2c8c8138b31658f1 *vignettes/a04_Vocab_based_codelists.Rmd
6bf616c1cddc5cd28cf632c988077967 *vignettes/mock_db_fig1.png
159a4342c012e030a46555a265fcbe4c *vignettes/mock_db_fig2.png
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21ceed6a0107371e6783321a2ba2a0b8 *vignettes/mock_db_fig8.png
