513fe2d5ba17253809c957c5a7582862 *DESCRIPTION
0d5ae9399bd1c8d5c9b09af8579609d7 *NAMESPACE
eef1f20e9cefa496bee2dff7e6a22519 *NEWS.md
d85c70d7cc13131129503e9d73f8eb1b *R/CodelistFromCodelistWithDetails.R
8426d9bfed586d465a8fbd70434b90fd *R/CodelistGenerator-package.R
8ba9cb23bffe2621a5965963ab621a7d *R/checks.R
0b77a57eefc19b168bf160e50151a401 *R/codesFromConceptSet.R
3bfca2e04fc89d0cf1067f26be8941c1 *R/codesInUse.R
c19c2a744219b400399676f7127bb929 *R/compareCodelists.R
eb959293d0ae26ca18bd8daf70661cd1 *R/data.R
49338e0badf7382484a86076190b4e90 *R/drugCodes.R
fd87372148cb8659d4f5c03c425e75bd *R/findUnmappedCodes.R
befc976ba1773598d4ae3848f56e90c0 *R/getCandidateCodes.R
5bb085ff56efaa7f035a84f6be0b26ad *R/getDoseUnit.R
4756c7bc70ab9cfa121b1e544c3917f8 *R/getICD10StandardCodes.R
94ceecf849899ddfd8bcbea7c4ac805c *R/getMappings.R
c527e9db07ba2be9042cc3b39982917f *R/getRoutes.R
34bc9d8ecac1dfb5c04293936bbbbac8 *R/helperFunctions.R
dde6e2b088236ab4f40f46ad8fe8cffe *R/inputValidation.R
8fb67b2d662036cc2c4bd3b29dc23a66 *R/mockVocabRef.R
39fdadc19ab1445d200420e1b3698053 *R/runSearch.R
69b110156ed1c2b3008395b65dd96598 *R/stratifyByConcept.R
46fc6b6979c3062155c3dcead2b855fa *R/stratifyByDoseUnit.R
20a6867a2c13fa8ead8777245c693d3b *R/stratifyByRoute.R
6c5217ca1396904ff97ee2f10cf47746 *R/subsetOnDoseUnit.R
06035bb702ab19f239fa7fb5db5c4722 *R/subsetOnRouteCategory.R
95ff2e9ff875ba728b8f73eb553dd94d *R/summariseAchillesCodeUse.R
efa43ea9b1c68c97e2ba00770d83ecc1 *R/summariseCodeUse.R
88e474e728467ed11a7c64fe49d35e5b *R/summariseOrphanCodes.R
8bbe1a8b85d194a6d6cfae7b7a24e69d *R/sysdata.rda
9a5c313c01a72e881ac2e6b4acc532c5 *R/tableAchillesCodeUse.R
26cf288bceba84d2def99ac826f7b0c2 *R/tableCodeUse.R
cf794928715019cf81bd51d467156178 *R/utils-pipe.R
76d8cb690875457ce272beb670080129 *R/vocabUtilities.R
cf1a4c8a6de0447bd2935dd746fb99fb *README.md
cffbcac9044e837ebb1ef0a590e8fa39 *build/vignette.rds
9c639bb4739c5c356e98d0295f8e6982 *data/doseFormToRoute.rda
42b65802d597896b28b57a304820609c *inst/WORDLIST
3ca9cc5c01f646e385c3530e340c0903 *inst/cohorts/cohorts.json
d41d8cd98f00b204e9800998ecf8427e *inst/cohorts/extra_file.txt
820a94709409c3b4bd92fccfb055c944 *inst/cohorts2/GIBleed_male.json
7b66d8b088d973e3fc02396f6ef0ed09 *inst/cohorts2/cerebral_venous_sinus_thrombosis_01.json
d23d36c9c73e3b302e870efd856749b7 *inst/cohorts2/deep_vein_thrombosis_01.json
a0783e75ba5be80391a3938d31c2338d *inst/cohorts_for_mock/oa_desc.json
4eed1d70d532d224af44c7c080ddf3e6 *inst/cohorts_for_mock/oa_no_desc.json
a0783e75ba5be80391a3938d31c2338d *inst/cohorts_for_mock_dups/oa_desc.json
f86b08baf74ab3e00fe012be61e29314 *inst/cohorts_for_mock_dups/oa_no_desc.json
dffe4627e0a18749069471b9eae24936 *inst/cohorts_for_mock_with_exclude/oa_desc.json
3819d7fc0dd23dc6cfeea1608769e6ad *inst/cohorts_for_mock_with_mapped/oa_desc.json
4eed1d70d532d224af44c7c080ddf3e6 *inst/cohorts_for_mock_with_mapped/oa_no_desc.json
28e6093c2345696d3f91fea3e816dcb3 *inst/concepts/acetaminophen.json
d41d8cd98f00b204e9800998ecf8427e *inst/concepts/extra_file.txt
28bafd24684c6e9809c3942abc441d2d *inst/concepts/influenza.json
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800a730473dda4cb2e8f38499bb9cfaf *inst/concepts_for_mock_with_exclude/oa_with_excluded.json
800a730473dda4cb2e8f38499bb9cfaf *inst/concepts_for_mock_with_exclude/oa_with_excluded2.json
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8f9fe3443c0fd13d189bece68077d4a5 *inst/concepts_for_mock_with_mapped/oa_with_mapped.json
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3bf66c1e759d7a5201f8868a14e744b5 *inst/introData02.RData
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3f0aee4d7f3b1a680b664964f756687c *inst/medData03.RData
35b4a2efa38e84d887ba1a0b82f664e7 *inst/medDataConceptClass.RData
84d8224e1c60d2e100ee4854e139646b *inst/medDataDoseForms.RData
28e6093c2345696d3f91fea3e816dcb3 *inst/not_all_concept_sets/acetaminophen.json
9feee06bee33980f1a85c923571feddf *inst/not_all_concept_sets/cohort_def.json
28bafd24684c6e9809c3942abc441d2d *inst/not_all_concept_sets/influenza.json
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0451de6aebdaade40820c469f0f9800f *man/CodelistGenerator-package.Rd
0a3fc1fae74b8bb44f38e3b9abc029b1 *man/availableATC.Rd
596b6a3d15e73f5adf1cc5432dde24ba *man/availableICD10.Rd
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3f6fbfb077f68c992f6870ec71ef1243 *man/codesFromConceptSet.Rd
0b88a5f7ebd9fac860ad43d92b2eaa68 *man/codesInUse.Rd
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de83a01d22cd6af9f16a77ebc4c9ba87 *man/getATCCodes.Rd
b44a58a6deab5313f9472400b72f2181 *man/getCandidateCodes.Rd
33ffb158ee623a601a95266f0c158c25 *man/getConceptClassId.Rd
b995ad79c8319d241cfc9d525ae81084 *man/getDescendants.Rd
b9ed1ed361cf5206efba43fe4d8e647d *man/getDomains.Rd
635a3d1fa208f13c7d93c94f6f577bdf *man/getDoseForm.Rd
c8a1bcfd05f1718f14f7fb06344fc217 *man/getDoseUnit.Rd
c93be7abf0a224096a8089d63d0ae392 *man/getDrugIngredientCodes.Rd
d4ac75795485f939590a6bf7223fe7e7 *man/getICD10StandardCodes.Rd
5a8a9eb1bc38fafdd24bd42311f9c4de *man/getMappings.Rd
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104edf9566b6201072b0c91f195e88f7 *man/getVocabVersion.Rd
1fd7ba08eb48a4e964edad9108b0850c *man/getVocabularies.Rd
b4b2a1aaed51a38bed9f6e2f1b19f4e5 *man/mockVocabRef.Rd
29ee7383caa7fc8c14f52bd035509064 *man/pipe.Rd
18ed4a51b42c7aa63d0a027be2b0fe71 *man/restrictToCodesInUse.Rd
727df5c69634b85566df32a92ba6c28b *man/sourceCodesInUse.Rd
ce2984f4c7a6569424e6ccd5be8008d3 *man/stratifyByConcept.Rd
d485e52ee842668b6b266a40abcecdb7 *man/stratifyByDoseUnit.Rd
3c981b6cedc778e6f5d8c08be11ce78a *man/stratifyByRouteCategory.Rd
9beaec81ef6c3b412114d7a6f2f5de0c *man/subsetOnDoseUnit.Rd
54146b9b5e5a0ae8f7058ca759d754e7 *man/subsetOnRouteCategory.Rd
7d1eca439b26f6ff9766700e6c30d703 *man/subsetToCodesInUse.Rd
d82a168b024f322cce06dc9b0936fd27 *man/summariseAchillesCodeUse.Rd
070f9d623b4d97aed382cb65f3dff870 *man/summariseCodeUse.Rd
ab6b883662c71f6392fbb6e44454d5ad *man/summariseCohortCodeUse.Rd
459b24a28d156d4555992b8f03485d56 *man/summariseOrphanCodes.Rd
a5c2a7e9e8f60c24f127a3b5210605cb *man/tableAchillesCodeUse.Rd
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527f3b3afb7f609f34564dc3a017e546 *man/tableCohortCodeUse.Rd
32200707a1c02cd9e4978ee626950646 *man/tableOrphanCodes.Rd
54c6e8ade577cd9e23bcf07817edb66f *tests/testthat.R
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a74972767550c500184f790ba2201052 *tests/testthat/test-summariseAchillesCodeUse.R
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2536644c20d585dd0975dfe268dada8e *tests/testthat/test-summariseOrphanCodes.R
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f8f3c3a316acf46f8803dcc8e6f8fffb *tests/testthat/test-vocabUtilities.R
cba2dee4e26e352a6f14c57bfbc29c54 *vignettes/a01_Introduction_to_CodelistGenerator.Rmd
6677ef746a1d97606a3bb53356474268 *vignettes/a02_Candidate_codes_OA.Rmd
01075fcadd631710729049c38fb0372c *vignettes/a03_Options_for_CodelistGenerator.Rmd
d075034fe8afd9a5ab863df175956eac *vignettes/a04_Vocab_based_codelists.Rmd
6bf616c1cddc5cd28cf632c988077967 *vignettes/mock_db_fig1.png
159a4342c012e030a46555a265fcbe4c *vignettes/mock_db_fig2.png
42c52193ccb4b159463dfe41bb8a2162 *vignettes/mock_db_fig3.png
740a71ce9db94f8d2e1d74c847969261 *vignettes/mock_db_fig4.png
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4579ee87c573b7aef313213e9d24ade6 *vignettes/mock_db_fig6.png
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21ceed6a0107371e6783321a2ba2a0b8 *vignettes/mock_db_fig8.png
