98bf51a786ba1edce7d818a4df9ab122 *DESCRIPTION
f98a0a132a41a61383d4edd112f94e3e *NAMESPACE
a684b92fcbf5a65535fe87cd7c4ceb85 *NEWS.md
e9536d8dc707669f2de1af958065a0f2 *R/CodelistGenerator-package.R
8018eeb55722505c14ecbf18332965f5 *R/achillesCodeUse.R
412a90e190d188d53060b2da4f41bef9 *R/checks.R
2c21ffd42430121eb0d4c053ed2a3af3 *R/codesFromConceptSet.R
0853e09ece7ec4777d3712ba3bce64d1 *R/codesInUse.R
f5e52c026f241a645a85ce0357a7a125 *R/compareCodelists.R
75c918e6aa8082239b35a896342e17fd *R/drugCodes.R
adad122673e4442d7c155f18c05125a3 *R/findOrphanCodes.R
fd87372148cb8659d4f5c03c425e75bd *R/findUnmappedCodes.R
7ce0bfbdd1e02fb72efc859ecd010e17 *R/getCandidateCodes.R
49a8039d69d30c87c1f05e9797deb294 *R/getICD10StandardCodes.R
97fa5abeeb9169bcde24f8e3389f549f *R/getMappings.R
bbaf5745c58e6d275b684451f72b3bcb *R/inputValidation.R
173fe990d01f5e14ea8966aaac134d2e *R/mockVocabRef.R
a37fef23d9fd6ccef3289b779720466d *R/runSearch.R
980ace6ee205a57e0ad87c2a2fe03221 *R/summariseCodeUse.R
cf794928715019cf81bd51d467156178 *R/utils-pipe.R
58d006cd56920afa3c7300ee550701c7 *R/vocabUtilities.R
1cff85942124d5bcca8c0641c07aff99 *README.md
a340440af00511c37140bb968a98189b *build/vignette.rds
42b65802d597896b28b57a304820609c *inst/WORDLIST
3ca9cc5c01f646e385c3530e340c0903 *inst/cohorts/cohorts.json
d41d8cd98f00b204e9800998ecf8427e *inst/cohorts/extra_file.txt
a0783e75ba5be80391a3938d31c2338d *inst/cohorts_for_mock/oa_desc.json
4eed1d70d532d224af44c7c080ddf3e6 *inst/cohorts_for_mock/oa_no_desc.json
a0783e75ba5be80391a3938d31c2338d *inst/cohorts_for_mock_dups/oa_desc.json
f86b08baf74ab3e00fe012be61e29314 *inst/cohorts_for_mock_dups/oa_no_desc.json
dffe4627e0a18749069471b9eae24936 *inst/cohorts_for_mock_with_exclude/oa_desc.json
3819d7fc0dd23dc6cfeea1608769e6ad *inst/cohorts_for_mock_with_mapped/oa_desc.json
4eed1d70d532d224af44c7c080ddf3e6 *inst/cohorts_for_mock_with_mapped/oa_no_desc.json
28e6093c2345696d3f91fea3e816dcb3 *inst/concepts/acetaminophen.json
d41d8cd98f00b204e9800998ecf8427e *inst/concepts/extra_file.txt
28bafd24684c6e9809c3942abc441d2d *inst/concepts/influenza.json
f8032cc2f3f6ac5882b3b9a8c59e28a8 *inst/concepts_for_mock/oa_desc.json
01c7b29a2c5b0a1a69c15744ad219cc5 *inst/concepts_for_mock/oa_no_desc.json
f8032cc2f3f6ac5882b3b9a8c59e28a8 *inst/concepts_for_mock_with_exclude/oa_desc.json
800a730473dda4cb2e8f38499bb9cfaf *inst/concepts_for_mock_with_exclude/oa_with_excluded.json
800a730473dda4cb2e8f38499bb9cfaf *inst/concepts_for_mock_with_exclude/oa_with_excluded2.json
f8032cc2f3f6ac5882b3b9a8c59e28a8 *inst/concepts_for_mock_with_mapped/oa_desc.json
8f9fe3443c0fd13d189bece68077d4a5 *inst/concepts_for_mock_with_mapped/oa_with_mapped.json
516f95980a0978f8641e9d771f1c45af *inst/doc/a01_Introduction_to_CodelistGenerator.R
cba2dee4e26e352a6f14c57bfbc29c54 *inst/doc/a01_Introduction_to_CodelistGenerator.Rmd
b4f1118b42624683fbb715603ef9ca8b *inst/doc/a01_Introduction_to_CodelistGenerator.html
e7f76c69c99c3e1aa52be97896185269 *inst/doc/a02_Candidate_codes_OA.R
6677ef746a1d97606a3bb53356474268 *inst/doc/a02_Candidate_codes_OA.Rmd
88be3491fc75c5ca09ee7748e9f9a619 *inst/doc/a02_Candidate_codes_OA.html
5e806a6ae585a539151fc9cf5580bb1f *inst/doc/a03_Options_for_CodelistGenerator.R
01075fcadd631710729049c38fb0372c *inst/doc/a03_Options_for_CodelistGenerator.Rmd
4397fb540b8f80d0a027905e06e729dc *inst/doc/a03_Options_for_CodelistGenerator.html
4677ab6da3ceb9b2e87fbae866449b72 *inst/doc/a04_codelists_for_medications.R
89b1e3f3b46bc339cccd326161799095 *inst/doc/a04_codelists_for_medications.Rmd
176ed80b77a3b6025112aed915a591fa *inst/doc/a04_codelists_for_medications.html
0618707c728e7259350f88f4c9d53840 *inst/introData01.RData
3bf66c1e759d7a5201f8868a14e744b5 *inst/introData02.RData
c583d5e5f085779e27598858fec8e967 *inst/introData03.RData
8a8388cda9d09e8feae92d458cf2ba29 *inst/introData04.RData
5bb685340885dca91d4badfe35fbfb2a *inst/introData05.RData
d628e20467cadee2e399c97675668339 *inst/introVocab.RData
3f0aee4d7f3b1a680b664964f756687c *inst/medData01.RData
f2d5488e07209a41f122545df0754fdb *inst/medData02a.RData
3f0aee4d7f3b1a680b664964f756687c *inst/medData02b.RData
3f0aee4d7f3b1a680b664964f756687c *inst/medData03.RData
35b4a2efa38e84d887ba1a0b82f664e7 *inst/medDataConceptClass.RData
84d8224e1c60d2e100ee4854e139646b *inst/medDataDoseForms.RData
28e6093c2345696d3f91fea3e816dcb3 *inst/not_all_concept_sets/acetaminophen.json
9feee06bee33980f1a85c923571feddf *inst/not_all_concept_sets/cohort_def.json
28bafd24684c6e9809c3942abc441d2d *inst/not_all_concept_sets/influenza.json
12e975aaefe3bc5b88f6a50b4bed5d7a *inst/optionsData01.RData
013b6ee27df36385526261493562fe18 *inst/optionsData02.RData
024202eb74d4546fd7205db381ee6d0b *inst/optionsData03.RData
0e8ca73b3256cb3f894663e8a1889f7e *inst/optionsData04.RData
12e975aaefe3bc5b88f6a50b4bed5d7a *inst/optionsData05.RData
12e975aaefe3bc5b88f6a50b4bed5d7a *inst/optionsData06.RData
72b11e006cf645579124d8dce0e72d2b *inst/optionsData07.RData
c5410fa34fb509ed4301df620e93de39 *man/CodelistGenerator-package.Rd
14c0792a6a6a7b8e28ba781d0512fe89 *man/achillesCodeUse.Rd
edfd325119444e8dca100ea45a2073f0 *man/codesFromCohort.Rd
7d44481c51c6adedd1f7ae77540f203f *man/codesFromConceptSet.Rd
ce6c04f481923609c889eb52cc81194c *man/codesInUse.Rd
03d6afc4ccfcdf4f0849891ef61d13fc *man/compareCodelists.Rd
1a03bf764f2802ae51d0140aa38848b1 *man/figures/hexsticker.png
2b46ba7921edea4d0b839f72e47cd162 *man/findOrphanCodes.Rd
e2ff2692d821b9b562775852032c65a8 *man/getATCCodes.Rd
083983ec9a24bb62d5c0b6a46a853c7a *man/getCandidateCodes.Rd
adedd916b0b58046d51061843d0cfb19 *man/getConceptClassId.Rd
1f7dd7b39f45da01ac9aa7511562dc1f *man/getDescendants.Rd
762b7a59d99244b5558f1295bdb4c421 *man/getDomains.Rd
e412b44229d4215408deab697aa534e1 *man/getDoseForm.Rd
684626a89abaa19e41bbebe56a48b805 *man/getDrugIngredientCodes.Rd
3358cc39fdeaaa9ab5ffa1ad96e145a3 *man/getICD10StandardCodes.Rd
bfe3903cc60acae3dce624681b4768a0 *man/getMappings.Rd
3dd4da8ab1e55f758ad8bebcae4b18f9 *man/getVocabVersion.Rd
68da7a3c237b805f69249c84a70add48 *man/getVocabularies.Rd
5d5be4e9a2379dd6e610b550c70d7695 *man/mockVocabRef.Rd
29ee7383caa7fc8c14f52bd035509064 *man/pipe.Rd
eefcedd1e5f8d69869fef9c0fd87574e *man/restrictToCodesInUse.Rd
785883f844781123da22391844b34cb7 *man/sourceCodesInUse.Rd
246b0c06ca4f7ad9064822a5032134b9 *man/summariseCodeUse.Rd
c0fc9bf4108c4408ff34cb7a93223dc7 *man/summariseCohortCodeUse.Rd
54c6e8ade577cd9e23bcf07817edb66f *tests/testthat.R
4000706193d7198d8a5f3fb21f56c9e2 *tests/testthat/test-achillesCodeUse.R
4162b438dbbec9d8a1affad60ea21a92 *tests/testthat/test-codesFrom.R
2ac89e6ab31f273ddf1ba51c3c0bd47e *tests/testthat/test-codesInUse.R
dad9dfe4a3d8ccd470383801eaee49ff *tests/testthat/test-compareCodelists.R
39e0636f89d4eec56ccb8c897390b9df *tests/testthat/test-dbms.R
6cd1a46e33b67bb55846dd9a10b8f5c7 *tests/testthat/test-drugCodes.R
2d4823b054329b54c6cb1f5bb5332cb8 *tests/testthat/test-findOrphanCodes.R
4e95b6941595c85b2d4136f8b1bde81a *tests/testthat/test-findUnmappedCodes.R
6f126fab2b242f47db5e65b29a6c0b08 *tests/testthat/test-getCandidateCodes.R
a0cc98de5b882828e553f1118d3838d4 *tests/testthat/test-getICD10StandardCodes.R
a26a4c2b6047139c5118d8168205d9ea *tests/testthat/test-getMappings.R
8a4dd1446921fc8ea6648a1afb1e6007 *tests/testthat/test-mockVocabRef.R
de11c9aaca518fbe029b80a7f6b72e4d *tests/testthat/test-summariseCodeUse.R
39226ff5a513714231a4aff7a4b7ef2e *tests/testthat/test-synthea_sql_server.R
0491617d43c7960d615bbc84a573a7bc *tests/testthat/test-tidyWords.R
346a0fd6d8ce6a15c33d9cf0bf622e5c *tests/testthat/test-vocabUtilities.R
cba2dee4e26e352a6f14c57bfbc29c54 *vignettes/a01_Introduction_to_CodelistGenerator.Rmd
6677ef746a1d97606a3bb53356474268 *vignettes/a02_Candidate_codes_OA.Rmd
01075fcadd631710729049c38fb0372c *vignettes/a03_Options_for_CodelistGenerator.Rmd
89b1e3f3b46bc339cccd326161799095 *vignettes/a04_codelists_for_medications.Rmd
6bf616c1cddc5cd28cf632c988077967 *vignettes/mock_db_fig1.png
159a4342c012e030a46555a265fcbe4c *vignettes/mock_db_fig2.png
42c52193ccb4b159463dfe41bb8a2162 *vignettes/mock_db_fig3.png
740a71ce9db94f8d2e1d74c847969261 *vignettes/mock_db_fig4.png
70204dc86851a04f9fa684188ee26ae7 *vignettes/mock_db_fig5.png
4579ee87c573b7aef313213e9d24ade6 *vignettes/mock_db_fig6.png
86499ed6855abc7c932922a6abfa8ccf *vignettes/mock_db_fig7.png
21ceed6a0107371e6783321a2ba2a0b8 *vignettes/mock_db_fig8.png
