41426c77917f5828ee9982ab2a243a22 *DESCRIPTION
515894dd9d800cab327c59382ad5fea7 *NAMESPACE
ef98bb9410a3aa8dc626929de7225688 *R/CancelProgress.R
ace2fca070519bd07145285f3b9adbd1 *R/FailProgress.R
a56504adfb4920ef3f1af4a15b9fd93a *R/OLDrunNLMEInitialRun.R
0a6bfc5538265ef9a589c4a895e3df77 *R/ReportProgress.R
243ea73ce37b8b7ec4f7b4bac36874cd *R/UpdateMDLfrom_dmptxt.R
b665d25dae01a9d3443d4efb8cc29ac3 *R/UpdateProgress.R
499f62d57274994b0d20f0c91680ee47 *R/UpdateProgressMessages.R
a4ffade2ca29c42154d20c2dc80f69c9 *R/cat_filesWarnLong.R
fb0833a07877bcc7c4d39bb44186f5aa *R/checkHostParams.R
a75a7b385988bdad5caeac13cfbe79c2 *R/collateTables.R
74187cf68ef018a98381a44b3d89cee6 *R/collectJobErrors.R
09f044b35f836b79e886b6514f31e894 *R/collectJobResults.R
c19de4ba6a82745d78f307a3d84b4134 *R/collectJobResultsGeneric.R
a6fb8e36ee38120e808205b3adb34f56 *R/concatenateInitEstimates.R
006eac66c32bf5bab99b66615a923cd3 *R/copy_InputFiles.R
e099f4a26fe13975f620f59ab3cb95b1 *R/copy_filesWarnLong.R
e49ef13cf4685505fa9dc194e7e031e9 *R/create_jobdirs.R
398c547f50fbf067cbf7af260a561862 *R/generateConvergenceFile.R
9e84fca382124f38b9bd37c358b07f9b *R/generateEtaSpreadsheet.R
8bae144b6b9cbc3ca2ccaf2b291639fb *R/generateGenericTable.R
7877d8d0b70a11292c0dcbbd0d25460e *R/generateInitialScenarios.R
dee4317355403ae4214e5ab00d37820f *R/generateJobResults.R
2c2e2173e168a300606dc307ed00573d *R/generateNLMEScriptAndRun.R
4dad2caadeb0c71fec02e113bf1d45fa *R/generateNonparamSummary.R
b99d78d6a310a07b8b85870893f6f2f9 *R/generateOmegaEtas.R
f8bb6ea9412c4e7819e5fcb4810d2d72 *R/generateOverallSummary.R
135f05045ccc0431b9d407ce54b01856 *R/generateResiduals.R
22a9ed6d2d0389309bee68f7b5d6cbe9 *R/generateSecondary.R
4ce756df6da365c1fedd68fa9e531373 *R/generateSelCovarSearchArgsLine.R
a2b72ea98bdba238838ddc2f6091fcf5 *R/generateStatusWindow.R
8cbffc5d5c654def09c81151bae9a14b *R/generateThetaCovCorFiles.R
6ec8a4972a18767d120f7a7ce0b9a128 *R/getBestResults.R
781271f9c1534e9451081b37805827f4 *R/get_VIFs.R
bed7c81d4fdda12f30766ca2624e4fa5 *R/get_bluptable.R
bbe967f82da5b8ae19b74bf2b1cd52b2 *R/globals.R
12d593fc848fb8f9bece77579c5c74b8 *R/moveStepwiseOutputFiles.R
e3e22bba1426e9f5fc0c08cf1abe94b0 *R/multiCoreGeneric.R
749604c13fc5db6774d47b81a4e7c6c8 *R/parallel_utl.r
9574edc6af5aeea7109080a68be90ab9 *R/parse_outputFile.R
72915aee25faa7f332615c3781c68de9 *R/performBootstrap.R
457e0c13fd2956afafae776a2d756a41 *R/performEstimationOnSortColumns.R
ff6b0687d551216d9824da40f65acf81 *R/performParallelNLMERun.R
b2e38b3eb15431f3d8dd525a6aba8822 *R/performProfileEstimation.R
34ee740b063816fb8e097d1c9f708285 *R/performShotgunCovarSearch.R
b1d3ce254eaea90fa379e41a49f75a5d *R/performStepwiseCovarSearch.R
53734b10eb21733dbd7caf27dd3a8536 *R/readEtaCovTxtFile.R
82a70453b86d38051a64a36ff1c3828d *R/readProgressDotTxt.R
e48c2801e29dc2fc1e4ff486cf2c32b9 *R/readProgressUpdate.R
ffa557d254aac0e0540871b727c146cf *R/readStrCovTxtFile.R
098f448e2674be2749d7f00a7484c72b *R/reconnectGenericGridJob.R
36873d5d5163bc360400af73c1addabc *R/reconnectToBootstrapNLMERun.R
782d24b3825f5885633397f4879b8563 *R/reconnectToGenericNLMERun.R
7eb6b59a4948eb853ad94335b95164b6 *R/runNLMEGenericSample.R
66484e958fdcd1f68e737df292145d9f *R/runNLMEInitialRun.R
7148c47b835a54af02a08c82bcebb871 *R/runNLMESample.R
161bd826b0c943017c467f2012618280 *R/sortByColumnAndGenerateControlFile.R
f84afff5b0427dd6ffe2a8795afcf23a *R/startAndMonitorMulticoreJobs.R
dc378254fa6c9a8d4294067d5e1d1c27 *R/startGenericGridJob.R
3300bc3cfcf215a96b6f12a9c585c6be *R/summarizeBootstrap.R
462a673e2142fabe177744da808e4d68 *R/summarizeCovarSearch.R
3803987ad5c587daea9b92853d8c71c1 *R/summarizeProfileEstimation.R
d4d44b75a0bb61615a8d14b8ef7f8268 *R/summarizeSimpleEstimation.R
ab6818062fa50aa647c8e4733180e767 *R/summarizeStepwiseCovarSearch.R
fff1161ef5ddcb0a08e35bb77c2eadd8 *R/updateInitialStatus.R
d1e3d418093670fd1be38b946b338a8d *R/writeOutGlobals.R
0040c7bf441014c8f6a466c758faa75a *R/write_function_to_file.R
471860a778ebe6f62e71848a8d9ac517 *README.md
48384fe93094912a2eb71d441a4f5350 *inst/extdata/performBootstrap/cols1.txt
4de52aa0d28b0ceced4835ce828cd75d *inst/extdata/performBootstrap/data1.txt
12621ef263676d1aaa6335fc2ff37b70 *inst/extdata/performBootstrap/jobArgsCombined.txt
d5833e976c5a174266b54bb7c89b7495 *inst/extdata/performBootstrap/jobControlFile.txt
566dd5357bd154d1a6769fcd4a004f16 *inst/extdata/performBootstrap/out.expected
d5d237c45ab6c7289c877be08f4bbeaa *inst/extdata/performBootstrap/test.mdl
a3c50f2a77b8a5015beae91198fc77de *inst/extdata/performEstimationOnSortColumns/Overall.expected
b9fd85e88578abbd80d506a5f1c2d8f0 *inst/extdata/performEstimationOnSortColumns/cols1.txt
794ba85168d772a4a9fc8ccaa5ab6053 *inst/extdata/performEstimationOnSortColumns/data1.txt
3873b6faa603d337a86d6686a4f6df44 *inst/extdata/performEstimationOnSortColumns/jobArgsCombined.txt
32cdc7c651de796442c88e29cb563c0f *inst/extdata/performEstimationOnSortColumns/jobControlFile.txt
9cb0dd0e2538dcdbac8fa72a16c0af62 *inst/extdata/performEstimationOnSortColumns/test.mdl
91b1b0c93386f38e88c6181757c7d900 *inst/extdata/performParallelNLMERun/Overall.expected
47771aac0560cad7832cff9d490696d0 *inst/extdata/performParallelNLMERun/cols1.txt
794ba85168d772a4a9fc8ccaa5ab6053 *inst/extdata/performParallelNLMERun/data1.txt
ec4ae3366f349f55a72ae674a2a4f357 *inst/extdata/performParallelNLMERun/jobArgsCombined.txt
72e1aa16fb95ff60b9aa7de6ee72d1ec *inst/extdata/performParallelNLMERun/jobControlFile.txt
ed2735e500c4783066f69f2477b7d825 *inst/extdata/performParallelNLMERun/multipleIds/EtaCov.expected
f5205a7890699b6b45336836765cd247 *inst/extdata/performParallelNLMERun/multipleIds/EtaCovariate.expected
c4b0cfd605f835cadb6ee8c26c50353a *inst/extdata/performParallelNLMERun/multipleIds/EtaCovariateCat.expected
d7598aa43a5bbddb6842b1934d4962e1 *inst/extdata/performParallelNLMERun/multipleIds/EtaEta.expected
4f14efb5f398529b27082e96e169a97e *inst/extdata/performParallelNLMERun/multipleIds/StrCovariate.expected
477cdceba488065ace0af342256145a8 *inst/extdata/performParallelNLMERun/multipleIds/StrCovariateCat.expected
01a84756c1a7004681fba5bf713ce16c *inst/extdata/performParallelNLMERun/multipleIds/cols1.txt
396fd2a5c75e7302fd7b5e668c0b9ac8 *inst/extdata/performParallelNLMERun/multipleIds/data1.txt
d5353af076e5cdf5940dc7f31d5dcfa5 *inst/extdata/performParallelNLMERun/multipleIds/jobArgsCombined.txt
b13f58781a0b7ad4ed0778d9157d688e *inst/extdata/performParallelNLMERun/multipleIds/jobControlFile.txt
7094838e6d0ee2d9c75366feacc544c5 *inst/extdata/performParallelNLMERun/multipleIds/nonParEtaResult.expected
4d3d8f2211a94f1e199fff40a907c98e *inst/extdata/performParallelNLMERun/multipleIds/test.mdl
a30c071906d388f09aefd4e2c1e9fc28 *inst/extdata/performParallelNLMERun/test.mdl
6046b31a49bc0ffc3499f48912efdf87 *inst/extdata/performProfileEstimation/Profile.expected
7c79f5d15446c3c79a53f5685b4a4fad *inst/extdata/performProfileEstimation/Profile.unix
7c79f5d15446c3c79a53f5685b4a4fad *inst/extdata/performProfileEstimation/Profile.windows
da63914d8923a5bd1e32f4bbca978891 *inst/extdata/performProfileEstimation/cols1.txt
a1c55f9ddc1ef91519248d9ccf4a0155 *inst/extdata/performProfileEstimation/data1.txt
b977ebb17e4d15d0c2810c193ab5cd33 *inst/extdata/performProfileEstimation/jobArgsCombined.txt
25b76fe4fdf69e8c9b780c4d07710e97 *inst/extdata/performProfileEstimation/jobControlFile.txt
6f46e43864a3a4fadf526362a264e90f *inst/extdata/performProfileEstimation/test.mdl
c0c13df8b50c17d5688679f3185d494a *inst/extdata/performShotgunCovarSearch/Overall.expected
471f10e16919ce37dbfa0ef6c38ac9a5 *inst/extdata/performShotgunCovarSearch/cols1.txt
794ba85168d772a4a9fc8ccaa5ab6053 *inst/extdata/performShotgunCovarSearch/data1.txt
e0ada1fdb9ab2cd1638225ffe77d9985 *inst/extdata/performShotgunCovarSearch/jobArgsCombined.txt
8f00dc40d5b3c5d9fcadebc15413ed3e *inst/extdata/performShotgunCovarSearch/newNlmeControlFile.txt
5b0a8c5d9a07f78dc7e17d22f86e1c3b *inst/extdata/performShotgunCovarSearch/newNlmeargsCombined.txt
1a77933417ac4b025c5f16926dd689e4 *inst/extdata/performShotgunCovarSearch/test.mdl
e0cbc8564f209db50e75aa752eae962d *inst/extdata/performStepwiseCovarSearch/Overall.expected
471f10e16919ce37dbfa0ef6c38ac9a5 *inst/extdata/performStepwiseCovarSearch/cols1.txt
794ba85168d772a4a9fc8ccaa5ab6053 *inst/extdata/performStepwiseCovarSearch/data1.txt
77568dd3e780616da0443c2c17ec0274 *inst/extdata/performStepwiseCovarSearch/jobArgsCombined.txt
d7315cdfdd5e261efbe0d38ded5219f6 *inst/extdata/performStepwiseCovarSearch/jobControlFile.txt
1a77933417ac4b025c5f16926dd689e4 *inst/extdata/performStepwiseCovarSearch/test.mdl
47771aac0560cad7832cff9d490696d0 *inst/extdata/performVPC/cols1.txt
794ba85168d772a4a9fc8ccaa5ab6053 *inst/extdata/performVPC/data1.txt
a1a08fb4780205e2009b05a811295014 *inst/extdata/performVPC/jobArgsCombined.txt
0fb614df39998538eb42353b82c8dd1f *inst/extdata/performVPC/jobControlFile.txt
8872920ede90433f9d07a17cc9a8cb15 *inst/extdata/performVPC/predout.expected
a30c071906d388f09aefd4e2c1e9fc28 *inst/extdata/performVPC/test.mdl
27ef31476dc8a91350372e11a17e3f7a *inst/extdata/simIntegrationErrors/cols1.txt
88efc7dd27428bd5ec1e796ffcb9c332 *inst/extdata/simIntegrationErrors/data1.txt
55203805d03e1609a6058812df5f0c25 *inst/extdata/simIntegrationErrors/jobArgsCombined.txt
240033e5941fb405e825c6767bd0c21c *inst/extdata/simIntegrationErrors/jobControlFile.txt
43b702abe9832a75dfdd7dfc7e24b968 *inst/extdata/simIntegrationErrors/test.mdl
f277f79390897a1fa386d2b2707fbd1e *man/UpdateMDLfrom_dmptxt.Rd
0004fa90486076537cce1986ae9caf31 *man/checkGCC.Rd
4bf0d008cf1bafe5e99461376eb1c03f *man/checkInstallDir.Rd
147deb237928edec32550e1b914cc880 *man/checkLicenseFile.Rd
e52f1e18bd708312e98a8708ce6ef852 *man/checkMPISettings.Rd
c6c3040cb368b1101667166f53566c34 *man/checkRootDir.Rd
ff4ee243dc43d6e0ba90b96d8a3557e2 *man/getTableNames.Rd
ef640bb749002cffd513571a427a91bc *man/performBootstrap.Rd
d680e979bf9d67a43a6c2d255d32001b *man/performEstimationOnSortColumns.Rd
b042cf79436339c34a0ca0553deb6192 *man/performParallelNLMERun.Rd
97f7528d6a8e601ef5d92d8675a0927c *man/performProfileEstimation.Rd
aee28af2cf7aa8e241ef309e5a262e30 *man/performShotgunCovarSearch.Rd
aeedff04e1a1019d30c0f9024dbda18c *man/performStepwiseCovarSearch.Rd
cb3b1c35dc5839ffea8fd094ed5eb2c2 *man/reconnectToBootstrapNLMERun.Rd
66e5c249abfb5eb6ebdb6aaaf83e89be *tests/testthat.R
317fad05babec5aa329a83c43e96c0a7 *tests/testthat/test_VPC.r
1da5e2c56be45c7035b6d5214325ffca *tests/testthat/test_bootstrap.r
224561cc0bc9a3272e061985d0e91647 *tests/testthat/test_profile.r
bcd93028b38e3d2605d8075f9006b20d *tests/testthat/test_shotgun.r
d9accf5a1dbc56e0a539eec99f364644 *tests/testthat/test_simIntegrationErrors.r
82207310de21ac452ae18bb54a9f86cd *tests/testthat/test_simpleFit.r
6a92f28c75d3842b4c59ad9576fe667a *tests/testthat/test_simpleFitMultIds.R
8dd841ab38fa1d4c15470b37bf165851 *tests/testthat/test_sortFit.r
2da060d1269684a1b914f66ab3b1a6d4 *tests/testthat/test_stepwise.r
