useDynLib(CNVassoc)

export(
cnv,
is.cnv,
CNVassoc,
CNVtest,
getProbs,
getProbsRegions,
getPvalBH,
getQualityScore,
mixture,
multiCNVassoc,
simCNVdataBinary,
simCNVdataNorm,
simCNVdataCaseCon,
simCNVdataPois,
simCNVdataWeibull,
plotSignal,
fastCNVassoc
)

S3method(print, cnv)
S3method(plot, cnv)

S3method(anova, CNVassoc)
S3method(logLik, CNVassoc)
S3method(print, CNVassoc)
S3method(summary, CNVassoc)
S3method(print, anova.CNVassoc)
S3method(print, summary.CNVassoc)

S3method(print, QualityScore)
S3method(getQualityScore, cnv)
S3method(getQualityScore, default)

S3method(print, CNVtest)

S3method(getProbs, cghCall)
S3method(getProbs, cnv)

S3method(subset, cnv)

# not exported:
  # assocCNV.i
  # classCNV
  # EMlogistic
  # EMnorm
  # getQualityScoreDefault
  # hessianLinear
  # hessianLogistic
  # linear.fit
  # logistic.fit
  # logLike.logistic
  # logLike.norm
  # matrix2vector
  # mix
  # NRlogistic
  # NRnorm
  # plot.cnv.intensities
  # plot.cnv.norm
  # vector2matrix
  # is.quantitative
  # getProbsRegions.i
  # Others ...

