cbf632cfdc0b46bd0cee405784cbcf9f *DESCRIPTION
6ec1f94730007feb260f0d79cd1ab5ab *NAMESPACE
3e803cef4c2244f3e852facff076f90e *R/CNVassoc.R
94c46187b4e037c409721bbd345e2245 *R/CNVtest.R
83b7b83e822dbc9d9e4727a5f3beb8b3 *R/EMWeibull.R
c385f42856d8da52bce848a88f7ccfc9 *R/EMlogistic.R
cec347dce5548c7aa9ef6664f6199fc4 *R/EMmixt.R
b1d708ab7ae7e190e99bf5b2047e7eec *R/EMnorm.R
4cdea2ba368718a9e0e17cf51143ac36 *R/EMpoisson.R
5160d391566ff1b12dde206b820f8ac5 *R/NRWeibull.R
30cf4fe93c811484103c13ed51a17788 *R/NRlogistic.R
ee1af71b94d6a34c10d55246181d2647 *R/NRnorm.R
a9ac3b22125a4a061436cc4f2157226c *R/NRpoisson.R
ad86f652a870fec5d51649c2b9e6b035 *R/anova.CNVassoc.R
47bfcc8f2cf22d2e53211ff03ed42154 *R/assocCNV.i.R
966539b0608d955ba6317afe7f535cf2 *R/checkCNV.R
c21881f2da0333be49c5ca3e8221e8fa *R/classCNV.R
0e4995242d10fe2254af74ed5cd4bc08 *R/cnv.R
97453a5c1848c812c591dbfe03d8e992 *R/cnvBatches.R
bfabe144fa10f6d3f86f8dceb648d003 *R/cnvDefault.R
abf1a0fbef29459cf4721cd782f1a7f3 *R/fastCNVassoc.R
cafddf5a5e036a2c24bad7c9b3c01730 *R/firstlib.R
9a6ff8ad8c2e829e9ddb924e1dcac4db *R/getProbs.R
2b9d61e4a8091f01c065a10b617aeb53 *R/getProbs.cghCall.R
754450c479089c5e78dbee822951e030 *R/getProbs.cnv.R
977ce18986dd84c8e0d2baca27eb0242 *R/getProbsRegions.R
31a18b6bfc0a25c10d88f5aa2b408a99 *R/getProbsRegions.i.R
0aa13417043ef55435e8327b787c19a9 *R/getPvalBH.R
aee88af6c2db9e44b44289102e211899 *R/getQualityScore.R
b54bf06147a622bc2d41d449cbdda332 *R/getQualityScore.cnv.R
e88747096c24bb49f5c17854052e7627 *R/getQualityScore.default.R
1e15a7165d6a3aaef7b26a49ece31429 *R/hessianLinear.R
9d9bdc086aa27f9eaa2ff89f6df08c8d *R/hessianLogistic.R
afec641f5c37e81a79ff8f742129ffa3 *R/hessianPoisson.R
a2d650cabd9f56799712ced68a0134fa *R/hessianWeibull.R
592d87a93f770b34279c2abfd955c97a *R/ifelsem.R
39171a00fa7054a3040b903af469bed9 *R/is.cnv.R
7d61e9091bb06a8d269f517caf64608a *R/is.quantitative.R
4bdadbc2aade9409b019ebc0bc909d86 *R/linear.fit.R
7bf08b43b79ac38d2b440f41f5359ca7 *R/logLik.CNVassoc.R
5f35b4b2ac132c0becc3518fe14e6ea4 *R/logLik.survreg.R
044f3d859ca3344050a6461f47c6a19e *R/logLike.logistic.R
ac928c16856006894f649403f50244f5 *R/logLike.norm.R
39f564bb23016274a73ac7058947d6aa *R/logLike.poisson.R
a73d9b88af5726814041c720610d2750 *R/logLike.weibull.R
89c667e45f60fe89a634828cc9fb32b8 *R/logistic.fit.R
67084db74c8df8e42f7bd8ded22d4c02 *R/matrix2vector.R
caa024c04808a910b858339d538a759e *R/mix.R
4793b3fdd7bc991147c483f220676869 *R/mixture.R
16ec75689a165063113c5a5226bf9c6c *R/multiCNVassoc.R
04b97377716d1458a0e890bf77809b78 *R/plapply.R
8124db16a2d91e1ff641a305638cafa5 *R/plot.cnv.R
03edc05932c814f6c8d6b02a7a544fc8 *R/plot.cnv.intensities.R
6c71765c2dca2a0f26bdd6e727ef023a *R/plot.cnv.probabilities.R
fe7e236f0881666c3aecaecb1f4b18ac *R/plotSignal.R
94923ddd2a053a2afedb747243d204d1 *R/poisson.fit.R
29ba31ac7230368b119f6e707ec5e2c1 *R/print.CNVassoc.R
edcb4845b61f45d67fa23d20d2a75003 *R/print.CNVtest.R
548a3d7f88da5f913d3a283d6860572c *R/print.QualityScore.R
0b1964bbf1a6c5dbb2d4bff585ca4b48 *R/print.anova.CNVassoc.R
398154f652e6c56d8cf1e2549a6da565 *R/print.cnv.R
3f69aeda29917cb02e7f19e9ef23ea98 *R/print.summary.CNVassoc.R
fe7e236f0881666c3aecaecb1f4b18ac *R/signalPlot.R
7b4bd0834669156880251f88bc39b32e *R/simCNVdataBinary.R
53ebaf921dc71dc1b0db88b28337f503 *R/simCNVdataCaseCon.R
2a55767c7521d7a11538fcfdec6e0f97 *R/simCNVdataNorm.R
c7e57e29e5d6d011b85d182d7df92d66 *R/simCNVdataPois.R
54cff9de0ef7edfb5005c9a998a2eaee *R/simCNVdataWeibull.R
5aef29d30070a2609156c9918e204deb *R/simNormMixt.R
3db0e2c2a51a6014b01e963c40950e05 *R/subset.cnv.R
b2087ef0ecc26840047e246124227f42 *R/summary.CNVassoc.R
e8598bf667c61ee62c21fa0f8af00fc6 *R/translate.r
40f67cc608c344c75dcfee3ae834a49e *R/vector2matrix.R
2c3805d11eb96eb94a5079e606e9b37b *R/weibull.fit.R
c2ce940b6656611a133a82aec1064c5e *R/z[.cnv.R
561364dc822f0147024b71ed15d857ab *inst/doc/CNVassoc_vignette.R
dba14647e27a32adf64c72930a1b6f7d *inst/doc/CNVassoc_vignette.Rnw
d349e7ca10fe5314806453069b68782b *inst/doc/CNVassoc_vignette.bib
d61153d0222d845f1b508c42be3ffc96 *inst/doc/CNVassoc_vignette.pdf
bf4d34e95d106f4a211d3d8f07199d25 *inst/doc/changelog.txt
5fbd4f7081b0058f5f079fe9ac5dba6b *man/CNVassoc-internal.Rd
2bc048562430906754f72a1aa40e88d3 *man/CNVassoc.Rd
ea119098f08fd354a7e25b76b53ed456 *man/CNVtest.Rd
62810b2d385af06c67cb62b196596fce *man/cnv.Rd
905288ff4316667e8fe629eed9bd0025 *man/fastCNVassoc.Rd
b3d2331e1f2e5085b51e686bf74f9ccf *man/getProbs.Rd
c30a1042332eb4416b1d1763dbfc231a *man/getProbsRegions.Rd
1b46884a966207212e28b1756be0e969 *man/getPvalBH.Rd
cb6a6830e06d009490eaa321063024b9 *man/getQualityScore.Rd
24692693ff12f7434066f22a73c67343 *man/multiCNVassoc.Rd
14190603aa004870905799a1841d8f5f *man/plotSignal.Rd
014adca2584f183f526fc4d25d525cd9 *man/simCNVdataBinary.Rd
fcd99e637f899ffd0f832042540192cd *man/simCNVdataCaseCon.Rd
73b0f0391c48b8986b0c38a92d087f07 *man/simCNVdataNorm.Rd
4574e6f637acf6dfc5f34ccfdef0b481 *man/simCNVdataPois.Rd
f6500399fe5e4e297583b21571625f6e *man/simCNVdataWeibull.Rd
c847cd01e450b3ccf6053c8a422b7067 *src/CNVassoc.h
d2156df484a3371d953d28d5e5deee42 *src/Makevars
520a06fb32e3463ccd3e5b72db404447 *src/NRlogistic.c
2cbb00a0611b329f49f050110a2e59b0 *src/NRlogisticcov.c
064f9448023836a08641afd2e03c5c5f *src/NRweibull.c
b119bd2649fdfcd7f06f79048f4259ab *src/NRweibullcov.c
525a1a30433bfb96c93bf14f9b971017 *src/dqrls.f
6941dc9853d584528901779098ba2dae *src/init.c
e33cd3f43e9dca32cb308b909df01e07 *src/logliklogistic.c
534c6698bbc402fe1dece10286e4f25c *src/logliklogisticcov.c
7e50168cd0721387afd2b9b28fe98a3d *src/loglikweibull.c
afb0fbee86ed79731039be0dc7bc19e3 *src/loglikweibullcov.c
dc38448f96eb3646716fd18ac288ccd2 *src/maxC.c
7bb6124fb0cd454d0d901528f15b1e51 *src/sampleC.c
dba14647e27a32adf64c72930a1b6f7d *vignettes/CNVassoc_vignette.Rnw
d349e7ca10fe5314806453069b68782b *vignettes/CNVassoc_vignette.bib
27e21e587fb92e960483ed90d4322be2 *vignettes/fig1.pdf
fd62ba2e691e4e3ca679625763f681e5 *vignettes/main_figure_new.pdf
6655032efbad4381cc9f6975dc43b0b4 *vignettes/main_fugure_Q.pdf
