49318812b501c9a7c6c0da3044b97a58 *CNVassoc-Ex.R
09c6669e8bc462c7d6fc8c0608b6a9d5 *DESCRIPTION
8e2b94021c08a9d90c861b2e62616feb *NAMESPACE
3e803cef4c2244f3e852facff076f90e *R/CNVassoc.r
90a2b09e236e8ed63908336e11929ce9 *R/CNVtest.r
83b7b83e822dbc9d9e4727a5f3beb8b3 *R/EMWeibull.r
c385f42856d8da52bce848a88f7ccfc9 *R/EMlogistic.r
cec347dce5548c7aa9ef6664f6199fc4 *R/EMmixt.r
b1d708ab7ae7e190e99bf5b2047e7eec *R/EMnorm.r
4cdea2ba368718a9e0e17cf51143ac36 *R/EMpoisson.r
5160d391566ff1b12dde206b820f8ac5 *R/NRWeibull.r
30cf4fe93c811484103c13ed51a17788 *R/NRlogistic.R
ee1af71b94d6a34c10d55246181d2647 *R/NRnorm.r
a9ac3b22125a4a061436cc4f2157226c *R/NRpoisson.r
0d467e13ff6e7477dbe0f6a45983afb7 *R/anova.CNVassoc.r
47bfcc8f2cf22d2e53211ff03ed42154 *R/assocCNV.i.R
966539b0608d955ba6317afe7f535cf2 *R/checkCNV.r
c21881f2da0333be49c5ca3e8221e8fa *R/classCNV.r
0e4995242d10fe2254af74ed5cd4bc08 *R/cnv.r
97453a5c1848c812c591dbfe03d8e992 *R/cnvBatches.r
bfabe144fa10f6d3f86f8dceb648d003 *R/cnvDefault.r
2b9d61e4a8091f01c065a10b617aeb53 *R/getProbs.cghCall.r
754450c479089c5e78dbee822951e030 *R/getProbs.cnv.r
9a6ff8ad8c2e829e9ddb924e1dcac4db *R/getProbs.r
545873244c10e3458c33f346be7b69dc *R/getProbsRegions.R
43e1c473b92286f8ef7ce683c0ffe30c *R/getProbsRegions.i.R
0aa13417043ef55435e8327b787c19a9 *R/getPvalBH.R
b54bf06147a622bc2d41d449cbdda332 *R/getQualityScore.cnv.r
e88747096c24bb49f5c17854052e7627 *R/getQualityScore.default.r
aee88af6c2db9e44b44289102e211899 *R/getQualityScore.r
1e15a7165d6a3aaef7b26a49ece31429 *R/hessianLinear.r
9d9bdc086aa27f9eaa2ff89f6df08c8d *R/hessianLogistic.R
afec641f5c37e81a79ff8f742129ffa3 *R/hessianPoisson.r
a2d650cabd9f56799712ced68a0134fa *R/hessianWeibull.r
592d87a93f770b34279c2abfd955c97a *R/ifelsem.r
39171a00fa7054a3040b903af469bed9 *R/is.cnv.R
7d61e9091bb06a8d269f517caf64608a *R/is.quantitative.R
c4ba1d020b38fb272346bb9a47f4bbf5 *R/linear.fit.r
7bf08b43b79ac38d2b440f41f5359ca7 *R/logLik.CNVassoc.r
5f35b4b2ac132c0becc3518fe14e6ea4 *R/logLik.survreg.r
044f3d859ca3344050a6461f47c6a19e *R/logLike.logistic.R
ac928c16856006894f649403f50244f5 *R/logLike.norm.r
39f564bb23016274a73ac7058947d6aa *R/logLike.poisson.r
a73d9b88af5726814041c720610d2750 *R/logLike.weibull.r
45cc6b6c54333aa5f3c73f99321bad4a *R/logistic.fit.R
67084db74c8df8e42f7bd8ded22d4c02 *R/matrix2vector.R
caa024c04808a910b858339d538a759e *R/mix.r
4793b3fdd7bc991147c483f220676869 *R/mixture.r
6a392396d8889ac0fc19994b0b4e3ed1 *R/multiCNVassoc.R
04b97377716d1458a0e890bf77809b78 *R/plapply.R
03edc05932c814f6c8d6b02a7a544fc8 *R/plot.cnv.intensities.r
6c71765c2dca2a0f26bdd6e727ef023a *R/plot.cnv.probabilities.r
8124db16a2d91e1ff641a305638cafa5 *R/plot.cnv.r
fe7e236f0881666c3aecaecb1f4b18ac *R/plotSignal.r
c81784100d9f09287c91107cb4e14289 *R/poisson.fit.r
29ba31ac7230368b119f6e707ec5e2c1 *R/print.CNVassoc.r
edcb4845b61f45d67fa23d20d2a75003 *R/print.CNVtest.r
548a3d7f88da5f913d3a283d6860572c *R/print.QualityScore.r
0b1964bbf1a6c5dbb2d4bff585ca4b48 *R/print.anova.CNVassoc.r
398154f652e6c56d8cf1e2549a6da565 *R/print.cnv.r
3f69aeda29917cb02e7f19e9ef23ea98 *R/print.summary.CNVassoc.r
fe7e236f0881666c3aecaecb1f4b18ac *R/signalPlot.r
7b4bd0834669156880251f88bc39b32e *R/simCNVdataBinary.r
53ebaf921dc71dc1b0db88b28337f503 *R/simCNVdataCaseCon.r
2a55767c7521d7a11538fcfdec6e0f97 *R/simCNVdataNorm.r
c7e57e29e5d6d011b85d182d7df92d66 *R/simCNVdataPois.r
54cff9de0ef7edfb5005c9a998a2eaee *R/simCNVdataWeibull.r
5aef29d30070a2609156c9918e204deb *R/simNormMixt.r
3db0e2c2a51a6014b01e963c40950e05 *R/subset.cnv.r
b2087ef0ecc26840047e246124227f42 *R/summary.CNVassoc.r
40f67cc608c344c75dcfee3ae834a49e *R/vector2matrix.R
2c3805d11eb96eb94a5079e606e9b37b *R/weibull.fit.r
c2ce940b6656611a133a82aec1064c5e *R/z[.cnv.r
4d1e2564275c1d50ac348020b6e737b0 *data/A112.RData
ce85f52239e1961ff08d9b9a1c37a7bd *data/NeveCalled.rda
87fdc6bbd5523f1c866dc855e8f6f22e *data/NeveData.rda
99f0ab2e63039e1ba9d0e1d56dafe2c8 *data/NeveRegions.rda
69951a7eb5e7d529d8333db5eb24786b *data/SNPTEST.rda
d17ce7c5e1bf93efd0e730e602d7a739 *data/dataMLPA.rda
f31675b3b0f7e4ef798b9371927df6d3 *inst/doc/CNVassoc_vignette.Rnw
bd4bddd4edef06f0232abaee8914c3bf *inst/doc/CNVassoc_vignette.bbl
d349e7ca10fe5314806453069b68782b *inst/doc/CNVassoc_vignette.bib
4660fde5db04ad7cb9ef06263eedb176 *inst/doc/CNVassoc_vignette.blg
0b2784a31f532e8fab0910f6a5fa4805 *inst/doc/CNVassoc_vignette.pdf
da9a942891265515da0fe528fec23a09 *inst/doc/Rplots.pdf
de1aeda81e8c8ab6ded25df5ae2dbfab *inst/doc/Sweave.sty
13b699d0d2d553f524ab6b7a42fc288d *inst/doc/changelog.txt
27e21e587fb92e960483ed90d4322be2 *inst/doc/figures/fig1.pdf
6b5b73dae1839ff12f1a1b0ea4f67535 *inst/doc/figures/fig2a.pdf
aa74a34835af4d49f0048cc39496c88e *inst/doc/figures/fig2b.pdf
fd62ba2e691e4e3ca679625763f681e5 *inst/doc/figures/main_figure_new.pdf
6655032efbad4381cc9f6975dc43b0b4 *inst/doc/figures/main_fugure_Q.pdf
5394f2059add769f7e415a99fd1da10d *inst/doc/make_latex.r
6044abfb9619e9f738cd1e8139628281 *man/A112.Rd
c8c49538b22d8a6cb5e4e9b9e1d93a28 *man/CNVassoc-internal.Rd
839349c61702776793b56570622140fa *man/CNVassoc.Rd
ea119098f08fd354a7e25b76b53ed456 *man/CNVtest.Rd
0d1fb625f51d3b2833e8663b4123e8b9 *man/NeveCalled.Rd
b6c509a2713037e7a3c53d7c288e3dfc *man/NeveData.Rd
2ab69cc55d9dd467dff0e0c78b6369c0 *man/NeveRegions.Rd
ce77548f1a84a2111e512738a3c8ec6e *man/SNPTEST.Rd
4ed7b66d3f7141d3fcca4f8350469fb8 *man/cnv.Rd
0b421c73d52eecf4e057ae4ae77c5250 *man/dataMLPA.Rd
b3d2331e1f2e5085b51e686bf74f9ccf *man/getProbs.Rd
b7e72eedb67cd076f4642f6f40e75bbc *man/getProbsRegions.Rd
1b46884a966207212e28b1756be0e969 *man/getPvalBH.Rd
cb6a6830e06d009490eaa321063024b9 *man/getQualityScore.Rd
64273b6cf3e163d53b76bafbc408972d *man/multiCNVassoc.Rd
5bba9c30074c29baa84a388570d250f4 *man/plotSignal.Rd
014adca2584f183f526fc4d25d525cd9 *man/simCNVdataBinary.Rd
45e52db1dea78692d157373d091377cf *man/simCNVdataCaseCon.Rd
efd21f3043fa2dd14c508e0e289fc229 *man/simCNVdataNorm.Rd
4574e6f637acf6dfc5f34ccfdef0b481 *man/simCNVdataPois.Rd
448824ad7068961b00179838a6820b85 *man/simCNVdataWeibull.Rd
