dffb0fb9570506e79955aec32bcf368d *DESCRIPTION
7f86a1c1e8e5bb5533088de51ae0e6cd *LICENSE
d64bcb05d7077fe50920aa26d3d064af *NAMESPACE
5baceb06e0174ce146b8f1bdcce8480f *NEWS.md
88aa5b2e325fbebb6dfdeee2ae9771bd *R/CNVScopeserver.R
6fb1653c0cf0a96c0734dc3993174513 *R/GRanges_to_underscored_pos.R
90fdf0c988c9a981e5e7bf21ee6a8278 *R/averageMatrixEdges.R
ec934715ec01ae4527ae3ab1e86a53dd *R/calcCNVKernelProbDist.R
bc95da8e72a6b5aed6a19b51a458ef2f *R/calcVecLMs.R
d0042f7742d8e4814e6e2fcadc79f50f *R/createChromosomalMatrixSet.R
a5819972ec5f954427e349820a1f5dee *R/downsample_genomic_matrix.R
69482a301c3730b85d65201f1db8f7f0 *R/extractNegLogPval.R
a7dcf69241906e80acfdb7c848cb9f28 *R/formSampleMatrixFromRawGDCData.R
d4fc3422f598aa4610f8cd281f2b7c76 *R/freadGDCfile.R
7ffd7c5f1ea4f453ded6135ec6bcb871 *R/getAnnotationMatrix.R
e5a3892f1c95cb810d855816406b44f9 *R/getAsymmetricBlockIndices.R
28153ffe47788cd8378e172815e8c5c9 *R/getBlockAverageMatrixFromBreakpoints.R
9226ec7f0c459de8b0d3f6138e75636a *R/getGlobalRescalingStats.R
95251d721112bece8a6a0f8228121ce8 *R/getInterchromosomalInteractivePlot.R
dde3aec537b39ce5c07e9543b6e1f98c *R/importBreakpointBed.R
c1a1fbd43ce79bf271c8cbcc3250dfe3 *R/mathead.R
a382ed970526d0ce9890db957024ef4b *R/nbl_result_matrix_sign_small.R
7c37939e100c256b4f5d3a3417461d1d *R/postProcessLinRegMatrix.R
6533d83c634f4ab46e826a77c8b78a2c *R/rebinGenomicInteractions.R
aec716c9edb7ffe554bbb11a88feaa7a *R/runCNVScopeLocal.R
ea4e785295e0830339aa450386867480 *R/runCNVScopeShiny.R
c9febf9fdaeeaf9972eeedad1162212c *R/signedRescale.R
5639e5e9c4cd011b147b9e6b490e581c *R/underscored_pos_to_GRanges.R
ccb6a8b04eac578ae805ef88626a9dea *R/writeAsymmetricMeltedMatrixToDisk.R
e4df40c484084c54373919f61812df1c *R/writeMeltedChromosomalMatrixToDisk.R
3a314b66217ddf2cc3873439f71343ce *build/vignette.rds
6edd728bbea3ff250c291276d830c3d8 *data/nbl_result_matrix_sign_small.rda
a1093cbb37f77d27343427919bbba96e *inst/doc/additonal_examples.R
6e19c716f7a96cc2bd822ca5d66876b0 *inst/doc/additonal_examples.Rmd
aaa1b10a04b482a6e0f545836df137a3 *inst/doc/additonal_examples.html
8b85549d6a778f780a4be9808b3c3a49 *inst/doc/create_input_matrix.R
69ec8655d2cc60bffaca356fd1167c8e *inst/doc/create_input_matrix.Rmd
43169b988a5c5c1b5d2393f0706fd31a *inst/doc/create_input_matrix.html
13e983753963dd9c099939c4dd8a8cfd *inst/doc/create_output_matrix.R
3da689728a6218cba7900b564916434f *inst/doc/create_output_matrix.Rmd
576042b53795711966f05ebed9e29d0a *inst/doc/create_output_matrix.html
56f478193f0b892a44d3898f0226e25c *inst/doc/power_analysis.R
10340b6f9459af6d458557af8c1c9ba1 *inst/doc/power_analysis.Rmd
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7ed74d8cb4dd818d596514e25eca53bb *inst/extdata/censushg19.rds
16c0a5136d2cea276e998cb29cfce2e6 *inst/extdata/ensembl_gene_tx_table_prot.rda
c18d24695cfa463fb5a9b867793b9c33 *inst/extdata/grch37.rda
aeda73c6819b4732a2a66290d06dcbdb *inst/extdata/nbl_result_matrix_sign_small.rda
a9e478254424c4b4a051f8d1730f909c *inst/extdata/nbl_result_matrix_small.rds
8ed4a29f37ba2ccb81c3ca433ad84707 *inst/extdata/sample_breakpoints.bed
9eefde13d3be21a8b8bd2277c3f03a79 *inst/extdata/sample_breakpoints_chr1.bed
578ea4e683719300902c33e4fc9dfbfb *inst/extdata/somaticCnvSegmentsDiploidBeta_TARGET-30-PANRVJ_NormalVsPrimary.tsv
e737be5cadbd0310edb8e9591d6a4227 *man/CNVScopeserver.Rd
9fdcd13c36b5d039c6a7fbedbf9068c8 *man/GRanges_to_underscored_pos.Rd
de139c8f97264e7236722357c9bc1485 *man/averageMatrixEdges.Rd
df67aebebac237a63f02a2b3273f606c *man/calcCNVKernelProbDist.Rd
5dcee8077fdf7908ccd119b801d525bb *man/calcVecLMs.Rd
f986c97ef4942dd2c7d20a0bb7e0699d *man/createChromosomalMatrixSet.Rd
1959bc98deedee03f5c6def711a9bbcc *man/downsample_genomic_matrix.Rd
70d8b7f94323d6376a522db98b30cf32 *man/extractNegLogPval.Rd
07e1508c9876f7f3e7fbb7ab9a193b32 *man/formSampleMatrixFromRawGDCData.Rd
74c91f29ef9c3a4aa18711862fad4a27 *man/freadGDCfile.Rd
0f877168a13b8cdb8597f80faf377b2c *man/getAnnotationMatrix.Rd
c352ff5ad5e0a8e3e05d723f9b3b31d3 *man/getAsymmetricBlockIndices.Rd
952c05663996853395b895948b92272c *man/getBlockAverageMatrixFromBreakpoints.Rd
18cb8fa8ae978b793a86427fd027b509 *man/getGlobalRescalingStats.Rd
909e753db43a5eab2e69d69b037f062c *man/getInterchromosomalInteractivePlot.Rd
cdccb59b9a4e15b142ddb7168cd55d5c *man/importBreakpointBed.Rd
ce548c6787142e1b106d9a53d3a8045b *man/mathead.Rd
236610841edb071e9c8f64c6472204c6 *man/nbl_result_matrix_sign_small.Rd
aa3e16fad9f2c6fcbf6d6be9c72782f3 *man/postProcessLinRegMatrix.Rd
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0f88ae74f5eb7b14e8913ec1d185b094 *man/runCNVScopeLocal.Rd
8f088cd49e1f593f8d859d6debfab20f *man/runCNVScopeShiny.Rd
69bb5e71f9b070853610851fbdebdc26 *man/signedRescale.Rd
33d70f2baa5946cb55e3284bd1280906 *man/underscored_pos_to_GRanges.Rd
325f2027a80a9d50b9bf3eae71f13b10 *man/writeAsymmetricMeltedChromosomalMatrixToDisk.Rd
0abdbc895b7b3f155b51de869762382b *man/writeMeltedChromosomalMatrixToDisk.Rd
0b2f0b040a7118a40a3d43242bd6cc91 *vignettes/NBL_custom_sample_matched_input_matrix_1e5binsize_parallel.rds
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6f71055316888eb8249e4c7add00c840 *vignettes/NBL_custom_sample_matched_input_matrix_2.5e5binsize_parallel.rds
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a86a4be27a8492c709a2512a593bc33a *vignettes/NBL_sample_matched_input_matrix.rds
6e19c716f7a96cc2bd822ca5d66876b0 *vignettes/additonal_examples.Rmd
6ffea24c2b405da9b9086a12835773b8 *vignettes/aml_sample_matched_input_matrix.rds
d8f112e96a2d03495ef11f3cd2580317 *vignettes/blca_sample_matched_input_matrix.rds
7e0f90ee65364ae4533e044acba5c615 *vignettes/chr11_1e5_nbl.jpg
bc64ba0e9653eb5a47e678ec9b0b6f9f *vignettes/chr11_1e6_nbl.jpg
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c8ee016b9eebe6e0db38ec199bf8a9da *vignettes/chr11_1e8_nbl.jpg
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eab695593d348fc34449881f6855fe73 *vignettes/chr17_contour_blca.png
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69ec8655d2cc60bffaca356fd1167c8e *vignettes/create_input_matrix.Rmd
3da689728a6218cba7900b564916434f *vignettes/create_output_matrix.Rmd
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73168523f4fbef709390f5de7da6b9c0 *vignettes/nbl_result_matrix_small.rds
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10340b6f9459af6d458557af8c1c9ba1 *vignettes/power_analysis.Rmd
b97bee97e3dad113d64edd0942f2d043 *vignettes/skcm_sample_matched_input_matrix.rds
