6bd955280e2ca028dff07d0eab4d90bb *DESCRIPTION
7f86a1c1e8e5bb5533088de51ae0e6cd *LICENSE
cedc2ec20af3d004b684db512f431ba0 *NAMESPACE
7fbac2433a3193b9c02b76105c00b8d1 *NEWS.md
b9fd45315bb7bbf3ee7c60d3e08436e4 *R/CNVScopeserver.R
9deb2f82f164d97c8be810de327ccf36 *R/GRanges_to_underscored_pos.R
90fdf0c988c9a981e5e7bf21ee6a8278 *R/averageMatrixEdges.R
4a9d8025dacd7bcbd4a270ee60ea0a91 *R/calcCNVKernelProbDist.R
d8e0e5aa58a8e7102cb6b542310e595c *R/calcVecLMs.R
a423cca0d0f3a2310eebc4b7b8bdf72b *R/createChromosomalMatrixSet.R
bf5f8b27ef8cfae9e38a36b97be4dac5 *R/downsample_genomic_matrix.R
69482a301c3730b85d65201f1db8f7f0 *R/extractNegLogPval.R
95bf91f385c674ebaa2ea262c65d0d7b *R/formSampleMatrixFromRawGDCData.R
3ebe4d3f5aabceeb471dae8cd438ceab *R/freadGDCfile.R
065155f9bee9dd0726575cf551e123e6 *R/getAnnotationMatrix.R
b3182e8e9e09714d0c194334c980f7b7 *R/getAsymmetricBlockIndices.R
3ca40b27135ce08827c3f41992d34682 *R/getBlockAverageMatrixFromBreakpoints.R
9226ec7f0c459de8b0d3f6138e75636a *R/getGlobalRescalingStats.R
f48df2cf03ed784a118e8177d8d8421c *R/getInterchromosomalInteractivePlot.R
1c10bcd506de81114f93bde43a09beab *R/importBreakpointBed.R
c1a1fbd43ce79bf271c8cbcc3250dfe3 *R/mathead.R
a382ed970526d0ce9890db957024ef4b *R/nbl_result_matrix_sign_small.R
0d49fcd927473cc6447749937025f8db *R/postProcessLinRegMatrix.R
8c9fb0520960a8666e1f05d2848af8c5 *R/rebinGenomicInteractions.R
aec716c9edb7ffe554bbb11a88feaa7a *R/runCNVScopeLocal.R
920a1c648a388c23bff43a808179b64b *R/runCNVScopeShiny.R
73f13e34fa2759548794a5c4e6cf8a63 *R/signedRescale.R
fd8253315e8ca27731ae50d87a2d159e *R/underscored_pos_to_GRanges.R
af199c85ee585921da3c9242e7bd2b53 *R/writeAsymmetricMeltedMatrixToDisk.R
ae9e6d989648751505ec9ae4dbbc2bb0 *R/writeMeltedChromosomalMatrixToDisk.R
083ea3edc99ca243fe49be28a47401b1 *build/vignette.rds
aeda73c6819b4732a2a66290d06dcbdb *data/nbl_result_matrix_sign_small.rda
5802a93325379ea7b1f27ecbc49ffd60 *inst/doc/additonal_examples.R
7859e55e1a7b16c2775443ab6e9237d3 *inst/doc/additonal_examples.Rmd
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5a0219514df373ed430ebcfa20bb30ad *inst/extdata/ensembl_gene_tx_table_prot.rda
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9eefde13d3be21a8b8bd2277c3f03a79 *inst/extdata/sample_breakpoints_chr1.bed
578ea4e683719300902c33e4fc9dfbfb *inst/extdata/somaticCnvSegmentsDiploidBeta_TARGET-30-PANRVJ_NormalVsPrimary.tsv
b0611beabe549f3e07f978db8b54763c *man/CNVScopeserver.Rd
2b7c88e2702e0272047c7f11a06e66c1 *man/GRanges_to_underscored_pos.Rd
c6824896922d461e3367c46369f096ec *man/averageMatrixEdges.Rd
f0b98c27ceda8c4ab29c078ae9764aa2 *man/calcCNVKernelProbDist.Rd
c85cd028d79e08488f2f74d6fd5b570e *man/calcVecLMs.Rd
1daa4a30fb6903eb2a148e64ee6077cc *man/createChromosomalMatrixSet.Rd
34e93c1e485990902658171362fd048b *man/downsample_genomic_matrix.Rd
ef6da51cc556af8110d778d0d7ccb6a8 *man/extractNegLogPval.Rd
d2f1ad4da5a014856464c9daa9d62b6c *man/formSampleMatrixFromRawGDCData.Rd
640b135f361b703434bf154a0f079b6f *man/freadGDCfile.Rd
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5eba88fd0db75ab3ae655a7ccaa744c6 *man/getAsymmetricBlockIndices.Rd
1f8e5b67914d4360e6fdf9476580b8d2 *man/getBlockAverageMatrixFromBreakpoints.Rd
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8cd19161a7c3aab13a826ecbf9b17db4 *man/getInterchromosomalInteractivePlot.Rd
0a996afe8fe724796da9bfeed63ffc1a *man/importBreakpointBed.Rd
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08bdb9897b2f10083adfde111eaf9d63 *man/nbl_result_matrix_sign_small.Rd
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6dd8e1ea32b2e07c47f539e9f282e089 *man/runCNVScopeLocal.Rd
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7cf0d8b07e3f4f703a82999fa6e31d3c *man/signedRescale.Rd
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a44f2059427afffc5153384cdd808510 *man/writeMeltedChromosomalMatrixToDisk.Rd
7fc5db8f94b5ecfbc0dd7fb945e70687 *vignettes/NBL_custom_sample_matched_input_matrix_1e5binsize_parallel.rds
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7859e55e1a7b16c2775443ab6e9237d3 *vignettes/additonal_examples.Rmd
e6a4ba99492fe5c8afa102120a8249a7 *vignettes/aml_sample_matched_input_matrix.rds
a37f64db7c072fae260763ea2b0424ac *vignettes/blca_sample_matched_input_matrix.rds
7e0f90ee65364ae4533e044acba5c615 *vignettes/chr11_1e5_nbl.jpg
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10340b6f9459af6d458557af8c1c9ba1 *vignettes/power_analysis.Rmd
55c803d38d4591a66b61591854c17594 *vignettes/skcm_sample_matched_input_matrix.rds
