b068ee2ffd9df87016258a14a8f1c600 *DESCRIPTION
002a7ecb8502b8598d7d1e7c83f9cb77 *NAMESPACE
1ff65b67704e9f3296a60269bfdaaf27 *NEWS
5c10da41de357f10bedcc9229a4fee64 *R/Arena.R
3b54d88f4ce6612b81817220cd9701a6 *R/BacArena.R
277edb0fe17e8ef3a84759c2dd555360 *R/Organism.R
75a46564f811be7d6ab00fe5ecd0dcfa *R/RcppExports.R
045ca61e5034d0038cf2e6293d5db5c1 *R/Stuff.R
d43d8d43aec7eb6b9dc3c6eddb328508 *R/Substance.R
b90877d9cb69299b8a937ef895bd4911 *R/data.R
84a02506a1d7d38ce329d98b5dc08f49 *README.md
a226f57888387122d821bd1dd9b22344 *build/vignette.rds
e8e29b2810bb9e1f4d76b34fa9000c28 *data/colpal.rda
0826f8a0ee7c1ff30862b615207e905d *data/datalist
238b87cdbf3275e85b22f4f9f430aceb *data/sihumi_test.rda
e16a20e884cd0344017997785c346811 *inst/doc/BacArena-Introduction.R
f72b8f749c633685c4a75d18be05af65 *inst/doc/BacArena-Introduction.Rmd
8c6f2991293566f003b9d14728be7fd0 *inst/doc/BacArena-Introduction.pdf
502ba077411809a732cbfa59462bcca5 *man/Arena-class.Rd
8f9df18d6496480ab21f6311c690db19 *man/Arena-constructor.Rd
d91fe0b462e02336795d2ada5000db22 *man/Bac-Constructor.Rd
28611a064d3b1ba8b98f629e05b31e47 *man/Bac.Rd
396202730de3a207b53e3389b7a23c68 *man/BacArena.Rd
12abd6d44eb5094c2e37edafd541de13 *man/Eval-class.Rd
51127bebe224fb48fc6cdfc17cb8bea6 *man/Eval-constructor.Rd
4c750e4cb4764dd59153bb6f4129f231 *man/Human-constructor.Rd
dbec8194f0564ee5992ce899b8b930f4 *man/Human.Rd
84a3235a5b65491e16609ac748e4f24f *man/NemptyHood.Rd
6146d5909717344b4b96e64f185e8e4f *man/Organism-constructor.Rd
b7cb1da033205823a83b705a6b501560 *man/Organism.Rd
da0cdc3fe023afad7eb6cd6187c29d60 *man/Substance-constructor.Rd
4d9eb3998cff6703b7348913a95335a6 *man/Substance.Rd
45ba8753d6d3c331b488773bc4e08b2e *man/addDefaultMed.Rd
6d7d6db6a1d02ff6fa9be1922fc73ef0 *man/addEssentialMed.Rd
424dfa8bc96535c947b22a7b2289144f *man/addEval.Rd
a58b75b2c0c383b99f7dfb9ad3de9dee *man/addOrg.Rd
2acdf54ad01b4d87340bde3f3c084d79 *man/addSubs.Rd
1e5c6f3b9c8c3b78d6312e49bc3e863b *man/cellgrowth.Rd
1e2d1b658ca622bfa92d2ff809cf272c *man/changeDiff.Rd
9dd061a7c65d5855aa3225c4495de996 *man/changeFobj.Rd
dcee034eaf1e80895e904577cccb9d43 *man/changeOrg.Rd
4115f35900c68ffffb1bd07d97b98ae6 *man/changeSub.Rd
ee9aa53c6a51f8686d9e251308a0e73f *man/checkCorr.Rd
dc6282261088beae200d9c9573311acd *man/checkPhen.Rd
543d44f2a762813f6c97a1e4b71adbe3 *man/checkPhen_par.Rd
5727d698cb6c00a0265afd3dab93ad6f *man/chemotaxis.Rd
7a557d6b01f2ba3c256cde852a0dbdbc *man/colpal1.Rd
0b718c58c24a95d2986c4ed0d985c070 *man/colpal2.Rd
923e4f631866e70827530ef2b8afcdfa *man/colpal3.Rd
f6dd771df73aa602f402e9e55f6d989e *man/colpal4.Rd
0bcd843d406c964a4f163fc3315a3662 *man/colpal5.Rd
8f816481167ab175bdefad80ad6b5b57 *man/colpal6.Rd
fb4177d4e222574c4db8643511096537 *man/constrain.Rd
40c8c11eb377ded5896a7ca98b502fe2 *man/consume.Rd
8048a5fa46f89471f7378ff0a86e35d3 *man/createGradient.Rd
1d8bb40f782081ca065138162b06c5ec *man/dat2mat.Rd
f6cc16855e6af642ed91e7d4ccbb46ab *man/diffuse.Rd
3478674ef927f1a0964b10a5e3e71de5 *man/diffusePDE.Rd
b80ff3aa80f70f3618579c0a78a5a45e *man/diffuseR.Rd
4cc4b3cfe131a67350ec2a3878199a0b *man/diffuse_par.Rd
dfb1ad2d6a36ef96545de533b2b7e016 *man/emptyHood.Rd
09dcf62c9a0012fe1b9b5f2657fd7f6b *man/evalArena.Rd
599229e674f927d3a4dd2c68686cd670 *man/extractMed.Rd
b9f5714865e7f0294d6c9c19f88841d5 *man/findFeeding.Rd
363f5d23d4f04524fc5c2a529cd6957d *man/findFeeding2.Rd
570be5c8044f69545ca470cf2edc0802 *man/findFeeding3.Rd
9106584e2059768eda20da3278ce1b0d *man/findFeeding3rep.Rd
092b122d2d3f366b22dbe64a6cbf9ae5 *man/findInArena.Rd
ac45f56643972f7c8ba1973e67cb62ae *man/findRxnFlux.Rd
5b9078d99d15451095087121a041feb6 *man/flushSubs.Rd
54f801b682fda743dfce38e5dde575d1 *man/fluxVarSim.Rd
290166cae4ce57b99e82deb72ea69502 *man/getArena.Rd
dec7c4c0f59181798c5888e2035d5c28 *man/getCorrM.Rd
ae70e3cb315b636d56738aab97b1565b *man/getPhenoMat.Rd
537510ada73305f1ae5b95fbdcfd58ea *man/getPhenotype.Rd
6dac780b105b44380cc373fc2636b6d7 *man/getSubHist.Rd
19f43e4e02bd4e6b674fa42259767544 *man/getSublb.Rd
12fd282c2625030e79a387d991efddc6 *man/getVarSubs.Rd
40f75c3a1eecc79973102611caf44617 *man/growExp.Rd
fab6894c3040bca08e0e092b9facd8a4 *man/growLin.Rd
cb22cd2497fa8426d9c1f5955fefc249 *man/growth.Rd
529c96d247ddfa11c2bbe0b42e8d7115 *man/growth_par.Rd
956206afb4cace92f761dec17630effd *man/lsd.Rd
a9965be005ba7122dfb1d723da5b16f6 *man/lysis.Rd
b6313cff2161591fec78645a6afd421e *man/minePheno.Rd
23d6584b334e5a33bc32ecdbc5c76c53 *man/move.Rd
7c3c776a4a494c75efe1f5a30a89f1e6 *man/openArena.Rd
c1899ce374961bddf69dc4c67dbc1f51 *man/optimizeLP.Rd
1774e95269e04c6d104060082407ed30 *man/plotAbundance.Rd
c48bffd93936fb8a3b0a4cc54aa0f6c5 *man/plotCurves.Rd
445ca9468ce2f74578d46c5b3e155ac9 *man/plotCurves2.Rd
dfe6d75579ceb143e18a919b5ddc4983 *man/plotFVA.Rd
f410b60b6249fd69bab3bd56b61d0473 *man/plotFluxVar.Rd
5ac96f9e6717741fb5fc351ec9a5870d *man/plotGrowthCurve.Rd
46e968efd0e4b06a45c9d4cd96bf6dd9 *man/plotInterNum.Rd
e5f6105748b67ba1122d4ff0adac89c2 *man/plotPhenCurve.Rd
41d312d2907151837c1d0d256553c331 *man/plotPhenNum.Rd
b886b0e88832f5084aef6b037fb8f9d5 *man/plotReaActivity.Rd
b1d8418f97b849bcdf1cb9c0589f05cb *man/plotShadowCost.Rd
070cb472dc280de896c54a4929364184 *man/plotSpecActivity.Rd
dadc121f95553965765b3d2554d3c2ba *man/plotSubCurve.Rd
8fcc8ddeda84a9ecebdcf7f4e577075a *man/plotSubDist.Rd
1b2dc8c6006865220a14a55e574c3c77 *man/plotSubDist2.Rd
eada7b0004d6b61b72333c4fb9e0a0b7 *man/plotSubUsage.Rd
0da56c6f4c06ce09c1d4a790ff898949 *man/plotSubVar.Rd
91eae04ea56dbdc521e2acbf03cd0b09 *man/plotTotFlux.Rd
5d7ea0f0d3ea950d619a67b8fa011c99 *man/redEval.Rd
8ab9708aeded4d3218b3c9e82f6b7fb5 *man/reset_screen.Rd
5b4f53593380e3c47b3d087eb779d6ab *man/rmSubs.Rd
f891780c16eebe67dadd7e3e7750ced3 *man/selPheno.Rd
75731f7f05e69a1e635da0809f18de13 *man/setKinetics.Rd
2d1a4b1e01daa92fc7e9a13843d5a59c *man/sihumi_test.Rd
b4c75694973db34947076fe5cdce4b5e *man/simBac.Rd
6629291b64b43d4983dafc09f3f67e50 *man/simBac_par.Rd
bd3088175d3c930f47a7888d8287bade *man/simEnv.Rd
f765062c1030ead2c79996ed010cfd4c *man/simEnv_par.Rd
5baa08ca6ff05fa9c31d018f780b6b02 *man/simHum.Rd
40d045395ae6932369ee3cb01a96c72d *man/statPheno.Rd
47f4603d900f0e5de0d4032a3219deb9 *man/stirEnv.Rd
f9b9c8cddac2f42bac3f14d25483d284 *man/unit_conversion.Rd
d619552be28ae8b1036a9cdc71b1085b *man/usd.Rd
e2cb95164b0341345952507362eb3198 *src/RcppExports.cpp
13aeea7eb96b66ba98098659d3cbe2ce *src/addBac.cpp
93fe24d90a8dbb8a8e301c955568cd07 *src/diff.cpp
af7cf759c6fef52c14ed3a6bb40dc2a7 *src/duplicate.cpp
77e6d68dd1da9733aec3c51956f40bc2 *src/move.cpp
f72b8f749c633685c4a75d18be05af65 *vignettes/BacArena-Introduction.Rmd
