2d9cd9be26e507e8dd2c2aa19333a9b9 *DESCRIPTION
77ad9d9894f24cd83734fb0bbce6d341 *NAMESPACE
39293e260b4c6567256249851176c062 *R/bpec.R
cd6decc4ebc61e05356c08232f3eb84e *R/bpec.contourPlot.R
8ce0b7aa2d979ff297211d1f41e1593b *R/bpec.covariatesPlot.R
096800f2c415d6e1e8d7dcd1e422dd4a *R/bpec.functions.R
8f6f7fde151a8d8d7d9ab3ec22d731d8 *R/bpec.load.R
7ee0cfeeeb1579456bd5b622c4d8658d *R/bpec.mcmc.R
308abd61af2dcd0bcc69370820f55d8a *R/bpec.phylo2GE.R
45562f2dd427369b81a29fa641846f65 *R/bpec.treeEdges.R
b824fa14c04a2415896893ce086f1b9c *R/bpec.treePlot.R
7ae51a5a973ea1f04f661a6007be4168 *R/zzz.R
a1726904c3a5deef4d44d748ca15243a *README.md
f63b5f945dc2602895b226192f733945 *build/vignette.rds
0ab2a7dd70bd27857c473e6f818a7921 *data/CladeBrownFrogsCoordsLocs.RData
c6a3f13945f9333ab16105f67cd028f2 *data/CladeBrownFrogsRawSeqs.RData
878eb427a092c0f40223f41e3cda8c22 *data/MacrocnemisCoordsLocs.RData
7c8b515f88ca06d64b37aa394761051e *data/MacrocnemisCoordsLocsMini.RData
4ac7974f377ed53792e4544a44c41fed *data/MacrocnemisRawSeqs.RData
03c295fe87a7e3a0c0dfa1f68378264d *data/TransalpinaCoordsLocs.RData
a5a27bb9e1dd217451ac43cee15fe026 *data/TransalpinaRawSeqs.RData
432681edf96a1ce3bc131f1b2cdd05be *inst/CITATION
05329b573a5d8f0096318eb12f24210d *inst/coordsLocsFile.txt
397a5819cf010c9ea88a57916e0e1503 *inst/doc/BPEC.R
7677de882ade2544ed1ffbc5fe0597f1 *inst/doc/BPEC.Rnw
72d00a9944c804ac1c7bfc3e1cd4c2fd *inst/doc/BPEC.pdf
42923210326d3ca36d86c5fc1a1ca75c *inst/haplotypes.nex
b3c79fb5208e3c40ce1081af72eabc35 *man/CladeBrownFrogsCoordsLocs.Rd
ffa85f45c90cc026cdfcb7463b832310 *man/CladeBrownFrogsRawSeqs.Rd
0501ba7ddb643b76a5105bc701dac981 *man/MacrocnemisCoordsLocs.Rd
7ad86b797c47677caa1f70b41dd0316b *man/MacrocnemisCoordsLocsMini.Rd
99ed6e613db97f735e9bfeb9b9f10933 *man/MacrocnemisRawSeqs.Rd
8411f9aae5d21c7c57a5d9b13182019d *man/TransalpinaCoordsLocs.Rd
b1c322820673a7684096402711a2f09c *man/TransalpinaRawSeqs.Rd
327c2fa742700f0124d0cb6ca00f47cb *man/bpec.Rd
110f925c02e29ac7b90ba629f31648c5 *man/bpec.contourPlot.Rd
bede7bc8187bdc0c8147f05224af7c9e *man/bpec.covariatesPlot.Rd
f2ee9509d28a3e4b80a1150bdef5d8a4 *man/bpec.geoTree.Rd
cdc3ea01e49f3062be5df7d3a97a40c5 *man/bpec.loadCoords.Rd
591de5f033fc99fb46991f32b94b9dfd *man/bpec.loadSeq.Rd
47d1666ff46ed7d7f208f5ed18794bc8 *man/bpec.mcmc.Rd
c6738051882fe529fe5e99f53ab1b1ca *man/bpec.treePlot.Rd
a6284514448cf740a8217138fad8561e *man/input.Rd
ef0b6b961fbcc6033d1fa9753f91a4b0 *man/output.clust.Rd
115712580712c58d0ccffb29e149622c *man/output.mcmc.Rd
28d4202f0dff3084623190c70a1a59c9 *man/output.tree.Rd
7a01d3218e3d1276e4874dc4ccc2c9cb *man/preproc.Rd
0ec9b35c547453c0778ac8a178ca8c01 *src/bpecfunction.c
fe924710287b11b5fc93a6a4848866c3 *src/hashingfunctions.c
b4f02aaa8644c25d1f7f19f64208b4f3 *src/hashingfunctions.h
a2698dfa9a6b9d36e52ecf3b49163cc5 *src/loopfunctions.c
0a945c51741f4d982c27ab58a828891b *src/loopfunctions.h
7a9cb6c84e0708ef5f01018b54602dfc *src/matrices.c
bc23fa89e4c7c9d9e398162715f61f1f *src/matrices.h
383ed35fb2c556c864273d0dfeb8d611 *src/randomnumbers.c
357e0cc29c9a72ef5a0d8b4ec922b8b0 *src/randomnumbers.h
7c22b1b500cab25872924e218f1645f5 *src/registerDynamicSymbol.c
39d861ffe141b3feb6712a48477b254f *src/treelikelifunctions.c
338a4f33a18c748093f38e066f485421 *src/treelikelifunctions.h
31bd1c89316f903af09f5af63d572be8 *vignettes/BPEC-009.pdf
af3b9b61dfaac5f1da56e6e35bb0346c *vignettes/BPEC-012.pdf
7677de882ade2544ed1ffbc5fe0597f1 *vignettes/BPEC.Rnw
f2d839a1b27abd61cf179f6dcca4540f *vignettes/Figures.key
88600188285e22ed92b8d6ffade15f33 *vignettes/JSS2640.bib
04729d3516092d0022c50f59637502e6 *vignettes/ManolopoulouHilleEmersonBPEC_R4-001.jpg
fae30997b485baf2227666eddd634806 *vignettes/ManolopoulouHilleEmersonBPEC_R4-012.pdf
11a7e284df94a24e4354a02f78b9b4f6 *vignettes/ManolopoulouHilleEmersonBPEC_R4-014.pdf
6b311f7504cc2e37d5598831f715702a *vignettes/ancestrallocs.pdf
0f8c7c4722b2c5daa6e606c90a7d6a59 *vignettes/bpecout.RData
99cacd1d5e8b9bb0e2188dee7a8ef13e *vignettes/coalescent.pdf
bf7f18b957154eefeaee19dea2eb6ab5 *vignettes/coalescentsubdivided.pdf
05329b573a5d8f0096318eb12f24210d *vignettes/coordsLocsFile.txt
2e167e9846f5d7ac5eab04dce1157208 *vignettes/haplotree.pdf
0dfb9a88a42fd4de15692608d41fec59 *vignettes/haplotreesubdivided.pdf
42923210326d3ca36d86c5fc1a1ca75c *vignettes/haplotypes.nex
8db07cccc990189c80736178637e284a *vignettes/hproposal.jpg
ed1d47bb040c5c1a16104c5daf7b1a79 *vignettes/messy.pdf
