ebd4b317050f4e2d6bf9c4b1c26afa43 *DESCRIPTION
f3585b7c56ff68f53c70a4da5a4f3c64 *NAMESPACE
c7a31701477177b7afd28e3dbe65dfc0 *NEWS.md
57332ec9f618c9fcb15f3f3a33449160 *R/BCEA-package.R
f7d6fbf094d31cf92a8ef5e830892b72 *R/CEriskav.R
d53152015a6b0355103289af42776a7f *R/CEriskav.default.R
e2cc7b8590ca757f113edcd559f36477 *R/CEriskav_plot_graph.R
dcbc320f2404a6279fd4fe47aec6c967 *R/CreateInputs.R
6bda18c08fe7c3ffdc9e0263ad3ca0ba *R/add_ceplane_xxx.R
59e9412e1a356d26bab30e02983149f9 *R/base_methods.R
66347d7872320f5b23bb17b95af2b062 *R/bcea.R
c674906a81a63e265af0fc546cac51bd *R/bcea.default.R
6fd2998240f49fc77bab6b0c4eaeaeef *R/bcea_plot.R
6ffa9c4142d764c37d2a7b2f386eec4d *R/bcea_setters.R
721cb25ac570f3f04eb55f666d944b20 *R/best_interv_given_k.R
e3678a5de823ddaac689eb02f36318b7 *R/bf.R
3df4cc79bca493bd09388a606d948073 *R/ceac.plot.R
e832f3b3ac73070c5f51bb8fc70c9301 *R/ceac_boot.R
ee30a8c823b1a7ca316287446a8c4529 *R/ceac_plot_graph.R
7e395a1c6fdbae2eb413349f6f6305ac *R/ceaf.plot.R
c2f0d9c08f707c3c4d9370dd9eb27d72 *R/ceef.plot.R
c9020cfc9e739402d3f45725f50ce968 *R/ceef.summary.R
e29a5e64edfd3465b16d90e32e0ac23a *R/ceef_plot_graph.R
32766f5d442da9dd2d4d9ec1b6186c3b *R/ceplane.plot.R
132043bf983b108e6094d0208a3aa1e3 *R/ceplane_base_params.R
c94423c41f2da4298c705edeeb55a219 *R/ceplane_base_params_xxx.R
fab65eb7ab3e06d0b3873c42b6da2f1b *R/ceplane_geom_params.R
938e5ca798de8e393665408efaf5d398 *R/ceplane_ggplot_params.R
593e50e3b0ace75ef83a227076cf4a0c *R/ceplane_plot_graph.R
917fdeaf7547c7529838b9c3d3d71fda *R/compute_eib_cri.R
96bf85bbcfc611ed53a141debcdead36 *R/compute_xxx.R
504ce2eda4aaca0a05a9ea10df1f6233 *R/contour.R
218e503d093b09d2ac74f238b3737337 *R/contour2.R
7ff47b2677be8595e3f200bdaa9ef327 *R/contour_base.R
3dbf28d7a5b1e6a7a5fed01f78fb6490 *R/contour_ggplot.R
4f4b2c38d756fa4c983c0cf09ca57c6d *R/convert_pts_to_mm.R
3cd7b711702fc02928c4610e86d605a4 *R/core.R
39100b85fb9411bc4783777a41e7c727 *R/data.R
2228a0ebbff8b6a785d8e44e52c11462 *R/diag.evppi.R
2c520f388cf534e31681c7ce9ac0d06c *R/eib.plot.R
54cc7463f1648e0cf7f9e127533735a2 *R/eib_legend_base.R
8fbb974c370dfb72ac6d37f3328c91cf *R/eib_params_base.R
671b4b8336195928df7c8f80c4b91a7c *R/eib_params_cri.R
7ef3de43a6e2f5bc52bf63173b1d5eaf *R/eib_params_ggplot.R
50f197a8d841f681a0399c42cdb2824e *R/eib_plot_graph.R
0eeab75dcc688d0063b9df5fb1a875bc *R/evi.plot.R
e5268fad5ec7b6e454054f0c2a64171a *R/evi_plot_graph.R
213494e40ff6fabb0d09cb233d2ffc90 *R/evppi.R
ad2664170413d2406a926ff632f8a2ee *R/evppi.default.R
f8a9a9f9aca7e04e6f0a08d69c1bb80f *R/evppi2stage.R
4f6bc820920d17d10f648809ec40c291 *R/evppi_base_params.R
a36033e9706f42da12e0f9b2a05a6cbf *R/evppi_helpers.R
9a397a11cdfa74ea1496f6ee9cabd08d *R/evppi_plot_base.R
1dc20c56627fe9656b764ef74e8f6c80 *R/evppi_plot_ggplot.R
5011668f37414e86dc8799e1b7d65c10 *R/filter_by.R
ad4464dd4546931c09499ffde7f53746 *R/geom_cri.R
f1b6327f585f1acd50578a9596ae9e21 *R/helper_base_params.R
1dcd723c956d5dab4098095b0c1ccd03 *R/helper_ggplot_params.R
ba6048be1558dc12658a79f1b5c2fa42 *R/ib.plot.R
391d5d9d1a98f6079bd6b0cddd08bd21 *R/ib_plot_base.R
0da8cb4988d11deb2943b389e4179de3 *R/ib_plot_ggplot.R
70e2142d75b5a07279da6a4efc7a8faa *R/info.rank.R
70dabe698de45445d9e709c7eca3d89b *R/info_rank_graph.R
b13124594c1793d10970eefabdae9bf5 *R/inforank_params.R
ac6e1818a5967aecb8c60e50ecd25627 *R/kstar_vlines.R
398f9ba8a052f83083f67f3306914e56 *R/lad.R
1d0857331867c14213d0149a3febce29 *R/ldr.R
551bdcf5927f302938be9b47371868b3 *R/ldr.slices.R
53181c74dfe9f47270598da4f2fadfb2 *R/line_labels.R
d0ef4289d3a2b1a7987ecbf7521c07c0 *R/list_methods.R
b8b647033340eec837016e5ec185e6f8 *R/make.report.R
fdf0d5ca05276308622d1ee6648a4668 *R/make_legend_base.R
de0f396d5cce49a06610daadf0607119 *R/make_legend_ggplot.R
5bdeb73c7f6ebaf847478833864f27f9 *R/make_legend_plotly.R
665a6bcc91680fa4acac04c5a8a04620 *R/mixedAn.R
36d2170f557aba44e2e5ea8e59275db7 *R/mixedAn.default.R
6b1d3e2a251d08c49b26a789e6c00868 *R/multi.ce.R
f37f2bdc6a81ea18b4942174b8c0dc78 *R/multiplot.R
639cc211ae317fff1e98dfee16fce4a9 *R/new_bcea.R
1e06113b0d92930c89e29da3a713ffdd *R/num_lines.R
3bdd338352410c3b9d5092389af5a344 *R/orthonorm.R
18a75e50f21f6a56e45d23e756fb98f9 *R/pfc.R
06ef230410129e5ca96f96bc383399af *R/plot.CEriskav.R
37f50f8aa964c5b7f72f22ba5ef1220c *R/plot.bcea.R
6c6974c3ffd7b26a5101feeff6a63016 *R/plot.evppi.R
1585ccf3610c33e173428a54d15ba284 *R/plot.mixedAn.R
4c6d5e279747e09ff9fd0da77633ae5d *R/plot_eib_cri.R
004f9e1887f6b6495bb4ff81db6502ed *R/prep_ceplane_params.R
65cdefc337d0e869fd1c25c04c22b39f *R/prep_eib_params.R
cd0df3715e7ee6f0f08f85691f20a850 *R/prep_frontier_data.R
7525354d4f48885d7a2326bfede5e62a *R/prepare_ceac_params.R
f6de5e7fa86be8b558b1c8ea42914b29 *R/prepare_ceac_params_multi.R
a963a87619f5b1e4df49a8567466be94 *R/select_plot_type.R
1994f0dd58907acb3c02675783cf5e08 *R/setComparisons.R
e2cb1f91c1e438ee2bc6f3cdc310e4d8 *R/sim_table.R
6b639add49668a93240ec17c62207407 *R/struct.psa.R
e38985d3f1028943b194fb2626cf00df *R/summary.bcea.R
2f48d65f638af2ee99eee02b65bf09c8 *R/summary.mixedAn.R
1b5cdde13bfa31c46a49983ce289bf52 *R/themes_ggplot.R
68aae5555f345245791a4bf7b57ceffe *R/validate_bcea.R
8de8b49af39495b1eed5e7c755364761 *R/xy_params.R
a876efeecdd117371ee09f5f7ad45f92 *R/zzz.R
874fea8e133d5e7b46e277cfefcf0826 *README.md
99899e31218adc648c7a9d648c3080eb *data/Smoking.RData
d9fffbdff75de17351daf56f60494de9 *data/Vaccine.RData
25b8477de31e1a0de9288727f12ddbc1 *data/datalist
d74673e86d3d521c543961cc8e3ed382 *inst/CITATION
b08521fd3c962a30a96f59d212a2ffd1 *inst/rmarkdown/report/biblio.bib
c766067860d6da79cb9d07d12b8b6b0b *inst/rmarkdown/report/report.Rmd
4155b1ee1ac7e879ceec33d85c13c6f8 *inst/rmarkdown/report/section_CEAC.Rmd
15aa341408420d0199ef9ffdfcbd30e1 *inst/rmarkdown/report/section_CEAF.Rmd
c00d076e85df3b99c533658670bb0582 *inst/rmarkdown/report/section_CEEF.Rmd
ead0860ff8e93a4b2ceea8a814d2f8fc *inst/rmarkdown/report/section_EIB.Rmd
565bde368d9e39069abebe2f05bfcd1e *inst/rmarkdown/report/section_EVPI.Rmd
04c40e8b9d2e58587a7f8b5913318b41 *inst/rmarkdown/report/section_InfoRank.Rmd
a9bb7a8495d0343eaadd555dd4a8697d *inst/rmarkdown/report/section_ceplane.Rmd
71453708a31321e2c7d188a942f66a54 *man/BCEA-package.Rd
1d242f2a89d97ae84d1e09df9dd4cb21 *man/CEriskav_assign.Rd
0f8e17d9343ea33720387e1565eaa6a9 *man/CEriskav_plot_graph.Rd
d341ec1444948a1882454db350710afe *man/Smoking.Rd
729972854f3635a5e8ab678bceb07dd3 *man/Vaccine.Rd
a7b3d2febf15e0d092298948e77a5e0c *man/bcea.Rd
d7e7b1a51dc777d80af60664b0e08f27 *man/best_interv_given_k.Rd
860514f83c51dc55887891d85b91e819 *man/ceac.plot.Rd
6b93313a264d447b1de6b68a6c3e4d82 *man/ceac_matplot.Rd
9668b6f6798ae1bd309c91b3e15db4c2 *man/ceac_plot_graph.Rd
08ed662e4d112a1b19151e5e1486a9f6 *man/ceaf.plot.Rd
c5a2422791ab7e0733cf9816fa475065 *man/ceef.plot.Rd
38a15c990cc1edb537eb1f4141143121 *man/ceef.summary.Rd
5c38f73c6d135110ec8e87acb1a6d6f1 *man/ceef_plot_graph.Rd
19d7cf0140839d0212b82239033bf320 *man/ceplane.plot.Rd
e752b96c9ac65dcfce42db42951f0d77 *man/ceplane_geom_params.Rd
785e8758f78bd2918e8eea4932199ebb *man/ceplane_ggplot_params.Rd
d8ef1e9f8e5052f9b0d4c7a47b29c748 *man/ceplane_plot_graph.Rd
4687c1e80664139cca179856adb4ba08 *man/comp_names_from_.Rd
f9c7000d9ad11180ad20657ea2f1797d *man/compute.evppi.Rd
40e5bd434fa221d87b8480235aea16f9 *man/compute_CEAC.Rd
88600a04244299b3f52d60092c2972d1 *man/compute_EIB.Rd
e7a33db681ea94bb69a8460580c2ddf5 *man/compute_EVI.Rd
834024d37907c67dbdc135bc464b89aa *man/compute_IB.Rd
595e0b6fec76edea0cf291e691ac1d8e *man/compute_ICER.Rd
d8d24b4dacb53cba7454a884fe5abd41 *man/compute_U.Rd
5a61ebbbf701cd9a78cf155d4860f6f6 *man/compute_Ubar.Rd
715cb5a1251ae07b92d73553b57436d0 *man/compute_Ustar.Rd
22d5f4c898fb463a025a811fb86a5b04 *man/compute_ceaf.Rd
d7611a17c328e749d27bab21ea4755be *man/compute_eib_cri.Rd
61b58ca604536af77e2b139df9c26dc8 *man/compute_kstar.Rd
7c8b614586e77fcbd0da08f38e19d4d1 *man/compute_ol.Rd
e57d8a2ff267816676794d4a2663067d *man/compute_p_best_interv.Rd
48df490227b3421af00e7b06b0cb6392 *man/compute_vi.Rd
9bb378a0e9cc2798ca1d6b121c23a5e5 *man/contour.Rd
caf5bfd2ab06127daaf3a4e3bd110af5 *man/contour2.Rd
a60792cee9d95341ffa04d336564d42c *man/contour_graph.Rd
75fbee179a6e5194767bfc42ef88244d *man/convert_pts_to_mm.Rd
29ea919a537c4f5787c9c2be9c7f75d5 *man/createInputs.Rd
92ad6b387110601c6e9e57ecc1782324 *man/diag.evppi.Rd
6a1560714087da83979d9e60d5bf0729 *man/eib.plot.Rd
1f63ac65d0d53f165b8f88db7542781c *man/eib_params_base.Rd
2b1523290494826f0d0ac97a4bae174f *man/eib_plot_graph.Rd
b1fbad8ae411b41a6c14f4f0d019293c *man/estimate.hyperparams.Rd
671783db5494c5f5fe0d90c9408f4dee *man/evi.plot.Rd
4f355310b3ffc51e781d1b1a61390815 *man/evi.plot.mixedAn.Rd
c6a62e1f4f59c6b90a91e8d39cfc4e6b *man/evi_plot_graph.Rd
9d7c2a3fbf4e0319fcecd3058bebf475 *man/evppi.Rd
e729250f87b3a1950a027ad58ff5d631 *man/evppi_plot_graph.Rd
469bdb9a0038fd8f9b47400c5261d29b *man/figures/logo.png
7d77aefd2bae94d512028bccf7bfe79a *man/fit.gam.Rd
7475c79b0a2ca611fb25b3eabc6ae1b1 *man/fit.gp.Rd
51a93a684e2d236e921c997f84f3af59 *man/fit.inla.Rd
efff18dc912676ea8bd219d3423210ff *man/geom_cri.Rd
dfdaa275cc7ee2dc241f6e746e6abf5e *man/ib.plot.Rd
df7fd1ed255bffb5fa60738a1631c7cc *man/ib_plot_graph.Rd
23aeb6734ccce8c5866c8dc2d127dd41 *man/info.rank.Rd
302870bbe788908c3413bc296a787c01 *man/info_rank_graph.Rd
3260111e3f3a7520268fbfd7ad00caf7 *man/inforank_params.Rd
831928dc427ecc78bd7391332c2d4aa7 *man/is.bcea.Rd
99894f2cefe993d77efd094dd7e247f1 *man/kstar_vlines.Rd
86ab0791bb60072f3e1316ca5a6a69b4 *man/line_labels.Rd
bdd0ebb6bce96c4e6ec8c52756c5c170 *man/loo_rank.Rd
ecac5d55bf1eef75853fae4d197f4038 *man/make.mesh.Rd
1f6b052525599e11db8f4db8e31df335 *man/make.proj.Rd
b82ec2c476536495068a138523623b24 *man/make.report.Rd
be6ddff7a3cb1c061fb46ee926336b70 *man/make_legend_plotly.Rd
4442f4582fe00be7063b1ed1be7e931c *man/mixedAn-set.Rd
fc52352948292fafbbb48296fe198b57 *man/multi.ce.Rd
d71de8c1e53ab54e76b82b110b85b0a8 *man/multiplot.Rd
58e226dd568645e8b9a50c6527f258f6 *man/new_bcea.Rd
4bdcb903e97809ed6b6f129ab444db44 *man/num_lines.Rd
873b3f5576f9bedd7197bec124855614 *man/openPDF.Rd
a8497e5fc18ebbf229bcbe03707bbb7d *man/plot.CEriskav.Rd
3e57efbdc5ebd112a29b6dbeec2f1dda *man/plot.bcea.Rd
271c61975a5314507c2448db8f75c51c *man/plot.evppi.Rd
4a329c95a5ddaae36b4a861601011baf *man/plot.mesh.Rd
9a61774bb0c1723e2d9088577b5ee872 *man/plot_eib_cri.Rd
e140a52e4165b4bb54a94fd353c72d46 *man/post.density.Rd
5a040b7ef6b97d54ecad70ed53602e80 *man/prep.x.Rd
47b1d04aca99cce27ad1b0d9b8b539d3 *man/prep_ceplane_params.Rd
d4163851e0a53d5444d50df7d3a56263 *man/prep_eib_params.Rd
68451d3b1e8e33ca61a3c973f77c3932 *man/prep_frontier_data.Rd
a8ae8f99918dea0158a62451058a324a *man/prepare.output.Rd
0e775fcca1b6ab33ccbbc00f8d26ca17 *man/print.bcea.Rd
01639e2f56c4c23862c111af7f6fc0ca *man/quiet.Rd
b621cf7632ae4722f0458d0e63796c7e *man/select_plot_type.Rd
dc0564d9850be6e0f4fe5fd2432f3bd5 *man/setComparisons.Rd
5f44a2c1bb3f88f6afebefe51e80322f *man/setComparisons_assign.Rd
89f8e9008c32cb82fb870ca45a818030 *man/setKmax_assign.Rd
f5925d3f63a19b193fc585bb3ba67666 *man/setReferenceGroup_assign.Rd
13d5bd91af114d08dcd88cb4d0c8e0b5 *man/sim_table.Rd
46bc2cd24bacbee835918938053b26e8 *man/struct.psa.Rd
6d609b730f2e1a6c077c841bbe0696f5 *man/summary.bcea.Rd
613366898b8e3c2512087bf8a76e817f *man/summary.mixedAn.Rd
313d4541ed2eaa3fe1880fb08fc908a5 *man/tabulate_means.Rd
3a21f07a1ee8a8400493248c3c8967c8 *man/validate_bcea.Rd
46761e0ad7c5b8280539f2743716b5e0 *man/validate_eib_params.Rd
cbe60c03ce5d3719104800f92a5ee6d4 *tests/figs/ceac-plot/ceac-plot-ggplot.svg
f05eedd59f8bc29764a1ab1856003f8c *tests/figs/deps.txt
5f40c017726b076f7b3708e28f546cc5 *tests/testthat.R
034e595cef79fe8865da50c4e6def4b9 *tests/testthat/Rplots.pdf
4d522a5bfe262993aafa48775e96ebb5 *tests/testthat/ce.RData
f1c590095106ab694434a8e26919213d *tests/testthat/ce_mock.stan
d8842ff4690137c2a2f61d95cef9cdfc *tests/testthat/ce_mock.txt
53045819b18362f4ea97e52e95720148 *tests/testthat/ce_smoking.RData
1d23d690b1682c58dfad5355ee4bd086 *tests/testthat/create_ce_mock.R
886cf1aacf4d1896018346a83e8e37f7 *tests/testthat/data/bugsfit.RData
c9069102daf1a1c2327a0dad39c01fab *tests/testthat/data/jagsfit.RData
29b663a610d799f09eeb5fc467da3cc6 *tests/testthat/data/stanfit.RData
189e314f9895c5f71425d79a26378b5f *tests/testthat/df_ce.RData
53045819b18362f4ea97e52e95720148 *tests/testthat/smoking_ce.RData
9995bd6529ed0a825b4967c26e1760a8 *tests/testthat/test-CEriskav.R
0c89c395f3b32fe4b7173a274b004319 *tests/testthat/test-bcea.R
abdfad0d8d848ee575b396dc971e7c51 *tests/testthat/test-bcea_setters.R
fe9dc3edd6b39fb4c6bf5c5838a7120f *tests/testthat/test-ceac_plot_ggplot.R
3c9ecba873a4c3b932ef8361dd441589 *tests/testthat/test-compute_U.R
a3b3c67722acab8818ec9c0510648d71 *tests/testthat/test-compute_kstar.R
2ad650cae352b67b15bb1b8e857057c5 *tests/testthat/test-compute_ol.R
fae8b3b052a018852b633c538e6e553c *tests/testthat/test-compute_vi.R
db0d195186f62bf3ce3a3fa58d94db2f *tests/testthat/test-createInputs.R
b17d5674d2056dc4d62082de38381426 *tests/testthat/test-eib.plot.R
d8295ab5375b2939975c05f5f284d60e *tests/testthat/test-eib_plot_ggplot.R
46c3ff1d566c6638bff14ba423f190b3 *tests/testthat/test-evppi.R
4f66f69644004fdc59a6f0e895bc3ced *tests/testthat/test-summary.R
