517aeb309f81614f9a4fea6f31d8ffd8 *DESCRIPTION
589e744327b7abb89d5a01f72812dd9a *NAMESPACE
5ce374f8bc91e086eb435aa43112ef19 *NEWS.md
225489418558da92a14040b033a9cf23 *R/HWE.exact.R
75d7274220bb2aba3ac6391344125677 *R/align.ambig.meta.R
c0fac9ab91b5caaa4af292053f9f1b5c *R/align.ambig.snps.R
2896a81bb98b30278a917a336c123f94 *R/align.ambig.study.R
be304da03d17f0211c55bf096005cdd7 *R/align.reference.R
91749dbbbf568e4b6e79f25bd12cf011 *R/ambig.check.data.R
ca64bcc3850dfc71b0023d64e0699fd2 *R/ambig.snps.R
8d9e36208c8317fc2a759ba4ccbb3ac5 *R/artp2.R
0b05c4f6f828f1cc25db19f6b3ce5e27 *R/artp2.chr.R
60dd21629151c9c1568068d66bd715a7 *R/artp2.select.genes.R
770e8106d9042a99a70ae22a79bd160f *R/assign.subject.id.R
6aaaa60b32b852f508d02afb98036f53 *R/check.misleading.factor.R
023ef6783ab50384ec0893df659b33f1 *R/check.os.R
e9a4174fb54ba2d01bf41181bac35054 *R/check.small.level.R
6880e258c7a89dac44bcdc1a901e62ee *R/complete.sum.stat.R
db9f02b31717dccc31801e147c3f2485 *R/convert.header.R
bb8f89c18b7f14346dfc97c9389b04af *R/convert.method.R
47a87c896105fa27555e757049f82ba9 *R/cov.svd.R
c45932333b6a7bc281c23ed832c5ed28 *R/create.formula.R
8cbc19e8daa652fc625ddd6b40ae7cdd *R/create.gene.cutpoint.R
48d26d9378ac399a8ad2b04e47b582b9 *R/create.group.R
169657485b31f90c50e20cd16253a5e0 *R/create.pathway.cutpoint.R
3189e20a5d59cd55ff8091c33003ea05 *R/create.sub.pathway.R
60be103db75ab94f5a6d0cc0b979cf4d *R/create.super.pathway.R
7a206349a7a4075acaa61e2cfbe5add4 *R/create.super.pathway.setup.R
f34f6aa8101a23c8f9775a16a27e9b1b *R/create.yx.R
f130330a3146ccbaa0fc32226861f947 *R/data.parse.R
283d8b12e69b8eff40006195ad52fc86 *R/data.subset.R
8fe7463e3bb1138f332e53b06d21bacd *R/error.try.R
498f29178c0b3e66987da23565ea991d *R/exclude.snps.R
d301f3a68fbfd6f3c3cdc18216b97b71 *R/expand_pathway.R
97ba84ce0f9206ef88e18cbd8db639ca *R/extract.conflictive.snps.R
b5a2502f87008e1167a81b9edb9d519a *R/extract.position.information.R
62ce5bdae2c983b805bc9221a462cdf8 *R/extract.reference.allele.R
8deb3761c9170f00f73cdbb313ba1d1f *R/filter.ambig.snps.R
61497b6f00446d52a589a93039395bc3 *R/filter.conflictive.snps.R
c649350e468a367a464ea26d4d7c8b16 *R/filter.raw.geno.R
21a7fa1868f39d485c5b7c2a7fbf67f2 *R/filter.reference.geno.R
73c3f21aa3ff68da7c2c0ff9899b07f7 *R/find.snps.in.regions.R
9e934aa15b8c552e9f58ed8445ecb9aa *R/gen.stat.miss.R
fbe5d3e034efe832e6285da0dc50a142 *R/generate.normal.statistics.R
38992e897057ece038b34035da8212ce *R/generate.pathway.pvalue.stat.R
528715dccc8625bd3c316877c73d3fd6 *R/inflation.R
60c4f5482e313d164eca0cc53fd342c3 *R/input.type.R
bda831c72ef5fcb86bfe3d9628184f65 *R/load.pathway.definition.R
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0a7757ba237b0e40f9512b06e824774c *R/load.reference.geno.R
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5feae92addbbf02378fffb789c1e3b28 *R/load.summary.statistics.R
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283d141ba70ab497b436e276e4a43a04 *R/map.SNPs.to.genofiles.R
bc4d0cb9ea70c87acb2967e4c6c123c0 *R/map.SNPs.to.plinkfiles.R
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7d33aa3ffc66c3d0cc815c0ee6aae4c5 *R/merge.stat.R
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5b254520d7fde26dfe99307d2e66e67f *R/multiple.comparison.summaryData.R
bc21f995bc8e52dafb8f2b20cb794a28 *R/multiple.pathways.setup.R
9e07ed6c577e45408642f8460838a5e2 *R/norm.stat.test.R
9dd35b2e77bbcbf8b3c5ea8c47aadcd3 *R/onAttach.R
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3ceeef0cbb9a7e8d30f7ebe0ebfaa928 *R/options.setup.R
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71d7f0874e399a22391705b9be737bc7 *R/rawData.dataframe.setup.R
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08e976350999ffc0891bb1305c3a11f5 *R/rawData.plinkfiles.setup.R
1bbe67be7567f710e6f25a0de924965a *R/read.bed.R
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afad81784342ff88bc618e5f340ce219 *R/recreate.pathway.R
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8bc61093e6eeaf0c919e388e6d484b87 *R/remove.conflictive.snps.R
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665ab07ff0f186de464af23258a89ac8 *R/removeWhiteSpace.R
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57e0ac9ad938442f3f704d2b80220b6a *R/split.sum.stat.R
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5113761277c8f88213c5754f4512fd82 *R/test.R
8cdfe3322d0d17799a2daf5662149c8c *R/tester.R
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87352cdc245af2a5639d2c3990ca2f55 *R/update.allele.info.R
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f0753fad25c9ef6fa6a8b4f6b5783252 *R/update.raw.geno.R
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9518dbe0c589de5cc75d77db93f3cb81 *R/update.ref.snps.R
25ddb923fa9d248f4566a3ab6714f4e4 *R/update.setup.R
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efbd1b57b527f79880fe6786b56ba19d *R/update.sum.stat.R
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5c76b248149178a16d3a471989404935 *R/validate.family.R
fb9728584ab949efb76c9f93858ac3b1 *R/validate.genofiles.R
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39f98c5bd50d7aa96bb8c39c4b8f61a1 *R/validate.lambda.summaryData.R
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66e8b2a20a231dea06891e7f4702e349 *R/validate.pathway.definition.R
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5ca55998cb53eaf8971fc809dec26c00 *R/validate.reference.R
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97a7694a9fe2791d663cb2e2d6b7ecfa *R/validate.setup.R
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4193cc0453d45ac6feb947584fdd3332 *R/warm.start.R
f83bec94b6df8e61e4fa5a503e2f5b36 *README.md
e66900a0e679a19b0c32de56a9a33366 *cleanup
724c4bdcda055b35a81aeeec051d7175 *configure
3a26eb7dcb8089b3d5400cfeede1174e *configure.ac
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